Free for academic non-profit institutions. Other users need a Commercial license

Aliases for NDUFB9 Gene

Aliases for NDUFB9 Gene

  • NADH:Ubiquinone Oxidoreductase Subunit B9 2 3 5
  • NADH Dehydrogenase (Ubiquinone) 1 Beta Subcomplex, 9, 22kDa 2 3
  • NADH-Ubiquinone Oxidoreductase B22 Subunit 3 4
  • LYR Motif-Containing Protein 3 3 4
  • Complex I B22 Subunit 2 3
  • CI-B22 3 4
  • UQOR22 3 4
  • LYRM3 3 4
  • NADH Dehydrogenase (Ubiquinone) 1 Beta Subcomplex, 9 (22kD, B22) 2
  • NADH Dehydrogenase [Ubiquinone] 1 Beta Subcomplex Subunit 9 3
  • Complex I-B22 4
  • B22 3

External Ids for NDUFB9 Gene

Previous GeneCards Identifiers for NDUFB9 Gene

  • GC08P124713
  • GC08P125555
  • GC08P125220
  • GC08P125507
  • GC08P125620
  • GC08P120876
  • GC08P125551

Summaries for NDUFB9 Gene

Entrez Gene Summary for NDUFB9 Gene

  • The protein encoded by this gene is a subunit of the mitochondrial oxidative phosphorylation complex I (nicotinamide adenine dinucleotide: ubiquinone oxidoreductase). Complex I is localized to the inner mitochondrial membrane and functions to dehydrogenate nicotinamide adenine dinucleotide and to shuttle electrons to coenzyme Q. Complex I deficiency is the most common defect found in oxidative phosphorylation disorders and results in a range of conditions, including lethal neonatal disease, hypertrophic cardiomyopathy, liver disease, and adult-onset neurodegenerative disorders. Pseudogenes of this gene are found on chromosomes five, seven and eight. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2015]

GeneCards Summary for NDUFB9 Gene

NDUFB9 (NADH:Ubiquinone Oxidoreductase Subunit B9) is a Protein Coding gene. Diseases associated with NDUFB9 include Mitochondrial Complex I Deficiency and Osgood-Schlatter's Disease. Among its related pathways are Metabolism and Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins.. GO annotations related to this gene include NADH dehydrogenase (ubiquinone) activity.

UniProtKB/Swiss-Prot for NDUFB9 Gene

  • Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gene Wiki entry for NDUFB9 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NDUFB9 Gene

Genomics for NDUFB9 Gene

Regulatory Elements for NDUFB9 Gene

Enhancers for NDUFB9 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F124718 0.9 Ensembl ENCODE 14.9 +181.5 181499 4.8 ELF3 HDAC1 ARID4B THRB RAD21 RARA YY1 SLC30A9 CREM MIXL1 TATDN1 NDUFB9 ZNF572 MIR6844 MTSS1 GC08P124718
GH08F124562 0.8 ENCODE 11.5 +25.2 25172 4.3 DMAP1 RAD21 RARA YY1 GATA2 ETV6 CREM THAP11 CEBPB REST MIR6844 TATDN1 NDUFB9 MTSS1 SQLE LOC105375744 TRMT12 LOC105375740
GH08F124573 0.8 Ensembl ENCODE 11.5 +34.9 34901 1.9 RNF2 MTA2 TAL1 BHLHE40 DPF2 ARID1B FOXK2 GATA2 NCOR1 IKZF1 TATDN1 MIR6844 NDUFB9 MTSS1 TRMT12 LOC105375744 SQLE LOC105375740 GC08P124592
GH08F124509 0.2 ENCODE 11.2 -28.5 -28527 1.8 ZNF366 FOS FOXP2 ZKSCAN1 TRMT12 ENSG00000253106 RNF139 RNF139-AS1 MIR6844 TATDN1 NDUFB9 LOC105375740
GH08F124579 0.8 Ensembl ENCODE 11.1 +40.5 40456 0.7 FOSL1 ZNF263 JUND HLF CEBPB TATDN1 MIR6844 NDUFB9 MTSS1 LOC105375740 GC08P124592
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around NDUFB9 on UCSC Golden Path with GeneCards custom track

Promoters for NDUFB9 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001445117 198 2601 HDGF PKNOX1 CREB3L1 MLX ARID4B SIN3A DMAP1 YY1 CBX5 ZNF143

Genomic Location for NDUFB9 Gene

Chromosome:
8
Start:
124,539,102 bp from pter
End:
124,568,510 bp from pter
Size:
29,409 bases
Orientation:
Plus strand

Genomic View for NDUFB9 Gene

Genes around NDUFB9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NDUFB9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NDUFB9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NDUFB9 Gene

Proteins for NDUFB9 Gene

  • Protein details for NDUFB9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y6M9-NDUB9_HUMAN
    Recommended name:
    NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
    Protein Accession:
    Q9Y6M9
    Secondary Accessions:
    • B2R8M6
    • Q9UQE8

    Protein attributes for NDUFB9 Gene

    Size:
    179 amino acids
    Molecular mass:
    21831 Da
    Quaternary structure:
    • Mammalian complex I is composed of 45 different subunits.

neXtProt entry for NDUFB9 Gene

Post-translational modifications for NDUFB9 Gene

  • Ubiquitination at Lys 15
  • Modification sites at PhosphoSitePlus

Other Protein References for NDUFB9 Gene

No data available for DME Specific Peptides for NDUFB9 Gene

Domains & Families for NDUFB9 Gene

Protein Domains for NDUFB9 Gene

Suggested Antigen Peptide Sequences for NDUFB9 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9Y6M9

UniProtKB/Swiss-Prot:

NDUB9_HUMAN :
  • Belongs to the complex I LYR family.
Family:
  • Belongs to the complex I LYR family.
genes like me logo Genes that share domains with NDUFB9: view

Function for NDUFB9 Gene

Molecular function for NDUFB9 Gene

GENATLAS Biochemistry:
NADH ubiquinone oxidoreductase (Q reductase),22kDa,component beta 9,hydrophobic fraction of the complex I multi-subunit enzyme of the oxidative phosphorylation,(OXPHOS),inner mitochondrial membrane,homologous to bovine subunit,B22
UniProtKB/Swiss-Prot Function:
Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gene Ontology (GO) - Molecular Function for NDUFB9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
GO:0008137 NADH dehydrogenase (ubiquinone) activity NAS 9878551
genes like me logo Genes that share ontologies with NDUFB9: view
genes like me logo Genes that share phenotypes with NDUFB9: view

Human Phenotype Ontology for NDUFB9 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NDUFB9 Gene

Localization for NDUFB9 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NDUFB9 Gene

Mitochondrion inner membrane; Peripheral membrane protein; Matrix side.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NDUFB9 Gene COMPARTMENTS Subcellular localization image for NDUFB9 gene
Compartment Confidence
extracellular 5
mitochondrion 5
cytosol 2

Gene Ontology (GO) - Cellular Components for NDUFB9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IDA --
GO:0005743 mitochondrial inner membrane TAS --
GO:0005747 mitochondrial respiratory chain complex I IEA,NAS 9878551
GO:0016020 membrane IEA --
GO:0070062 extracellular exosome IDA 23376485
genes like me logo Genes that share ontologies with NDUFB9: view

Pathways & Interactions for NDUFB9 Gene

genes like me logo Genes that share pathways with NDUFB9: view

Gene Ontology (GO) - Biological Process for NDUFB9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006120 mitochondrial electron transport, NADH to ubiquinone IEA,TAS --
GO:0007605 sensory perception of sound TAS 8661098
GO:0032981 mitochondrial respiratory chain complex I assembly TAS --
GO:0055114 oxidation-reduction process IEA --
genes like me logo Genes that share ontologies with NDUFB9: view

No data available for SIGNOR curated interactions for NDUFB9 Gene

Drugs & Compounds for NDUFB9 Gene

(5) Drugs for NDUFB9 Gene - From: DrugBank and HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
FAD Approved Pharma 0
Ubiquinone-1 Experimental Pharma 0
Ubiquinone-2 Experimental Pharma 0
NADH Nutra Target 0
NAD Pharma Full agonist, Agonist 0

(3) Additional Compounds for NDUFB9 Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
Fe2+
  • Armco iron
  • Carbonyl iron
  • FE
  • Ferrovac e
  • Hematite
15438-31-0
QH2
  • Coenzymes QH2
  • CoQH2
  • Reduced ubiquinone
  • Ubiquinol
  • Ubiquinone-1
56275-39-9
Sulfide
  • Sulfanediide
  • Sulfide
  • Sulfur
  • Sulphide
18496-25-8
genes like me logo Genes that share compounds with NDUFB9: view

Transcripts for NDUFB9 Gene

Unigene Clusters for NDUFB9 Gene

NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for NDUFB9 Gene

ExUns: 1a · 1b · 1c · 1d · 1e · 1f ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b
SP1: -
SP2: - -
SP3: - -
SP4: -
SP5:
SP6: - -

Relevant External Links for NDUFB9 Gene

GeneLoc Exon Structure for
NDUFB9
ECgene alternative splicing isoforms for
NDUFB9

Expression for NDUFB9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NDUFB9 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for NDUFB9 Gene

This gene is overexpressed in Muscle - Skeletal (x4.7).

Protein differential expression in normal tissues from HIPED for NDUFB9 Gene

This gene is overexpressed in Heart (9.4), Nasal epithelium (7.3), and Frontal cortex (7.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for NDUFB9 Gene



Protein tissue co-expression partners for NDUFB9 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of NDUFB9 Gene:

NDUFB9

SOURCE GeneReport for Unigene cluster for NDUFB9 Gene:

Hs.15977
genes like me logo Genes that share expression patterns with NDUFB9: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt for NDUFB9 Gene

Orthologs for NDUFB9 Gene

This gene was present in the common ancestor of animals.

Orthologs for NDUFB9 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia NDUFB9 34 35
  • 99.81 (n)
dog
(Canis familiaris)
Mammalia NDUFB9 34 35
  • 88.83 (n)
cow
(Bos Taurus)
Mammalia NDUFB9 34 35
  • 88.45 (n)
mouse
(Mus musculus)
Mammalia Ndufb9 34 16 35
  • 86.7 (n)
rat
(Rattus norvegicus)
Mammalia Ndufb9 34
  • 86.33 (n)
oppossum
(Monodelphis domestica)
Mammalia NDUFB9 35
  • 80 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia NDUFB9 35
  • 79 (a)
OneToOne
chicken
(Gallus gallus)
Aves NDUFB9 34 35
  • 77.84 (n)
lizard
(Anolis carolinensis)
Reptilia NDUFB9 35
  • 84 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ndufb9 34
  • 76.25 (n)
Str.5819 34
African clawed frog
(Xenopus laevis)
Amphibia Xl.4627 34
zebrafish
(Danio rerio)
Actinopterygii ndufb9 34 35
  • 74.14 (n)
wufb10b03 34
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.10507 34
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP009865 34
  • 56.59 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG9306 34 35
  • 54.57 (n)
worm
(Caenorhabditis elegans)
Secernentea C16A3.5 34 35
  • 46.28 (n)
Species where no ortholog for NDUFB9 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for NDUFB9 Gene

ENSEMBL:
Gene Tree for NDUFB9 (if available)
TreeFam:
Gene Tree for NDUFB9 (if available)

Paralogs for NDUFB9 Gene

(1) SIMAP similar genes for NDUFB9 Gene using alignment to 4 proteins:

Pseudogenes.org Pseudogenes for NDUFB9 Gene

genes like me logo Genes that share paralogs with NDUFB9: view

No data available for Paralogs for NDUFB9 Gene

Variants for NDUFB9 Gene

Sequence variations from dbSNP and Humsavar for NDUFB9 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs762235847 Likely pathogenic 124,543,167(+) GGCCA(C/G/T)CCAGC reference, missense
rs755557988 Likely benign 124,539,209(+) GGGAC(A/C/T)CTACC upstream-variant-2KB, reference, missense, utr-variant-5-prime
rs148402231 Uncertain significance 124,549,824(+) CTGCC(C/G/T)GAAAG reference, missense, stop-gained
rs10195 Benign 124,549,788(-) ACCAG(A/G)TGGCG reference, missense
rs140365193 Benign 124,539,144(+) CGTGC(A/G)GTTTC upstream-variant-2KB, utr-variant-5-prime

Variation tolerance for NDUFB9 Gene

Residual Variation Intolerance Score: 77.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.39; 27.36% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for NDUFB9 Gene

Human Gene Mutation Database (HGMD)
NDUFB9
SNPedia medical, phenotypic, and genealogical associations of SNPs for
NDUFB9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for NDUFB9 Gene

Disorders for NDUFB9 Gene

MalaCards: The human disease database

(4) MalaCards diseases for NDUFB9 Gene - From: OMIM, ClinVar, GeneTests, and DISEASES

Disorder Aliases PubMed IDs
mitochondrial complex i deficiency
  • mitochondrial complex 1 deficiency
osgood-schlatter's disease
  • osteochondrosis
balanitis
benign paroxysmal positional nystagmus
  • benign paroxysmal positional vertigo
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for NDUFB9

Genetic Association Database (GAD)
NDUFB9
Human Genome Epidemiology (HuGE) Navigator
NDUFB9
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NDUFB9
genes like me logo Genes that share disorders with NDUFB9: view

No data available for UniProtKB/Swiss-Prot and Genatlas for NDUFB9 Gene

Publications for NDUFB9 Gene

  1. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PMID: 20877624) Hendrickson S.L. … O'Brien S.J. (PLoS ONE 2010) 3 46 64
  2. Oxidative stress, telomere length and biomarkers of physical aging in a cohort aged 79 years from the 1932 Scottish Mental Survey. (PMID: 18977241) Starr J.M. … Deary I.J. (Mech. Ageing Dev. 2008) 3 46 64
  3. Polymorphisms in mitochondrial genes and prostate cancer risk. (PMID: 19064571) Wang L. … Thibodeau S.N. (Cancer Epidemiol. Biomarkers Prev. 2008) 3 46 64
  4. A genetic association analysis of cognitive ability and cognitive ageing using 325 markers for 109 genes associated with oxidative stress or cognition. (PMID: 17601350) Harris S.E. … Deary I.J. (BMC Genet. 2007) 3 46 64
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64

Products for NDUFB9 Gene

Sources for NDUFB9 Gene

Content
Loading form....