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Aliases for NDUFA9 Gene

Aliases for NDUFA9 Gene

  • NADH:Ubiquinone Oxidoreductase Subunit A9 2 3 5
  • NADH Dehydrogenase (Ubiquinone) 1 Alpha Subcomplex, 9, 39kDa 2 3
  • Short Chain Dehydrogenase/Reductase Family 22E, Member 1 2 3
  • NADH-Ubiquinone Oxidoreductase 39 KDa Subunit 3 4
  • Complex I 39kDa Subunit 2 3
  • NDUFS2L 3 4
  • CI-39kD 3 4
  • NADH Dehydrogenase (Ubiquinone) Fe-S Protein 2-Like (NADH-Coenzyme Q Reductase) 3
  • NADH Dehydrogenase [Ubiquinone] 1 Alpha Subcomplex Subunit 9, Mitochondrial 3
  • NADH Dehydrogenase (Ubiquinone) 1 Alpha Subcomplex, 9 (39kD) 2
  • Complex I-39kD 4
  • SDR22E1 3
  • CI-39k 3
  • CI39k 3
  • CC6 3

External Ids for NDUFA9 Gene

Previous HGNC Symbols for NDUFA9 Gene

  • NDUFS2L

Previous GeneCards Identifiers for NDUFA9 Gene

  • GC12P004495
  • GC12P004650
  • GC12P004628
  • GC12P004759
  • GC12P004714
  • GC12P004760

Summaries for NDUFA9 Gene

Entrez Gene Summary for NDUFA9 Gene

  • The encoded protein is a subunit of the hydrophobic protein fraction of the NADH:ubiquinone oxidoreductase (complex I), the first enzyme complex in the electron transport chain located in the inner mitochondrial membrane. A pseudogene has been identified on chromosome 12. [provided by RefSeq, May 2010]

GeneCards Summary for NDUFA9 Gene

NDUFA9 (NADH:Ubiquinone Oxidoreductase Subunit A9) is a Protein Coding gene. Diseases associated with NDUFA9 include Leigh Syndrome and Leigh Syndrome With Leukodystrophy. Among its related pathways are Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins. and Metabolism. GO annotations related to this gene include protein complex binding and oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor. An important paralog of this gene is ENSG00000255639.

UniProtKB/Swiss-Prot for NDUFA9 Gene

  • Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gene Wiki entry for NDUFA9 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NDUFA9 Gene

Genomics for NDUFA9 Gene

Regulatory Elements for NDUFA9 Gene

Enhancers for NDUFA9 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around NDUFA9 on UCSC Golden Path with GeneCards custom track

Promoters for NDUFA9 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for NDUFA9 Gene

Chromosome:
12
Start:
4,649,095 bp from pter
End:
4,694,317 bp from pter
Size:
45,223 bases
Orientation:
Plus strand

Genomic View for NDUFA9 Gene

Genes around NDUFA9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NDUFA9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NDUFA9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NDUFA9 Gene

Proteins for NDUFA9 Gene

  • Protein details for NDUFA9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q16795-NDUA9_HUMAN
    Recommended name:
    NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial
    Protein Accession:
    Q16795
    Secondary Accessions:
    • Q14076
    • Q2NKX0

    Protein attributes for NDUFA9 Gene

    Size:
    377 amino acids
    Molecular mass:
    42510 Da
    Cofactor:
    Name=FAD; Xref=ChEBI:CHEBI:57692;
    Quaternary structure:
    • Complex I is composed of 45 different subunits. This a component of the hydrophobic protein fraction. Interacts with BLOC1S1. Interacts with SLC2A4 (By similarity).
    SequenceCaution:
    • Sequence=CAA54099.1; Type=Frameshift; Positions=18; Evidence={ECO:0000305};

neXtProt entry for NDUFA9 Gene

Post-translational modifications for NDUFA9 Gene

  • Acetylated on lysine residues. BLOC1S1 is required for acetylation.
  • Ubiquitination at Lys 137 and Lys 234
  • Modification sites at PhosphoSitePlus

Other Protein References for NDUFA9 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for NDUFA9 Gene

Domains & Families for NDUFA9 Gene

Protein Domains for NDUFA9 Gene

Suggested Antigen Peptide Sequences for NDUFA9 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q16795

UniProtKB/Swiss-Prot:

NDUA9_HUMAN :
  • Belongs to the complex I NDUFA9 subunit family.
Family:
  • Belongs to the complex I NDUFA9 subunit family.
genes like me logo Genes that share domains with NDUFA9: view

Function for NDUFA9 Gene

Molecular function for NDUFA9 Gene

GENATLAS Biochemistry:
NADH ubiquinone oxidoreductase (Q reductase),component of the complex I multi-subunit enzyme of the oxidative phosphorylation (OXPHOS),iron sulfur-protein 2-like,inner mitochondrial membrane,homolog to 39kDa bovine subunit
UniProtKB/Swiss-Prot Function:
Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gene Ontology (GO) - Molecular Function for NDUFA9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003954 NADH dehydrogenase activity NAS 8486360
GO:0005515 protein binding IPI 19103604
GO:0008137 NADH dehydrogenase (ubiquinone) activity NAS 8486360
GO:0032403 protein complex binding IDA 23209302
GO:0050662 coenzyme binding IEA --
genes like me logo Genes that share ontologies with NDUFA9: view
genes like me logo Genes that share phenotypes with NDUFA9: view

Human Phenotype Ontology for NDUFA9 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for NDUFA9 Gene

Localization for NDUFA9 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NDUFA9 Gene

Mitochondrion matrix.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NDUFA9 Gene COMPARTMENTS Subcellular localization image for NDUFA9 gene
Compartment Confidence
mitochondrion 5
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for NDUFA9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 21630459
GO:0005654 nucleoplasm IDA --
GO:0005739 mitochondrion IDA --
GO:0005747 mitochondrial respiratory chain complex I IDA 9878551
GO:0005759 mitochondrial matrix TAS --
genes like me logo Genes that share ontologies with NDUFA9: view

Pathways & Interactions for NDUFA9 Gene

genes like me logo Genes that share pathways with NDUFA9: view

Gene Ontology (GO) - Biological Process for NDUFA9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006120 mitochondrial electron transport, NADH to ubiquinone TAS --
GO:0006814 sodium ion transport NAS 8486360
GO:0032981 mitochondrial respiratory chain complex I assembly TAS --
GO:1901006 ubiquinone-6 biosynthetic process IBA --
genes like me logo Genes that share ontologies with NDUFA9: view

No data available for SIGNOR curated interactions for NDUFA9 Gene

Drugs & Compounds for NDUFA9 Gene

(5) Drugs for NDUFA9 Gene - From: DrugBank and HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
FAD Approved Pharma 0
Ubiquinone-1 Experimental Pharma 0
Ubiquinone-2 Experimental Pharma 0
NADH Nutra Target 0
NAD Pharma Full agonist, Agonist 0

(3) Additional Compounds for NDUFA9 Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
Fe2+
  • Armco iron
  • Carbonyl iron
  • FE
  • Ferrovac e
  • Hematite
15438-31-0
QH2
  • Coenzymes QH2
  • CoQH2
  • Reduced ubiquinone
  • Ubiquinol
  • Ubiquinone-1
56275-39-9
Sulfide
  • Sulfanediide
  • Sulfide
  • Sulfur
  • Sulphide
18496-25-8
genes like me logo Genes that share compounds with NDUFA9: view

Transcripts for NDUFA9 Gene

Unigene Clusters for NDUFA9 Gene

NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for NDUFA9 Gene

No ASD Table

Relevant External Links for NDUFA9 Gene

GeneLoc Exon Structure for
NDUFA9
ECgene alternative splicing isoforms for
NDUFA9

Expression for NDUFA9 Gene

mRNA expression in normal human tissues for NDUFA9 Gene

mRNA differential expression in normal tissues according to GTEx for NDUFA9 Gene

This gene is overexpressed in Heart - Left Ventricle (x4.8).

Protein differential expression in normal tissues from HIPED for NDUFA9 Gene

This gene is overexpressed in Nasal epithelium (14.4) and Heart (10.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for NDUFA9 Gene



Protein tissue co-expression partners for NDUFA9 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of NDUFA9 Gene:

NDUFA9

SOURCE GeneReport for Unigene cluster for NDUFA9 Gene:

Hs.75227
genes like me logo Genes that share expression patterns with NDUFA9: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for NDUFA9 Gene

Orthologs for NDUFA9 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for NDUFA9 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia NDUFA9 34
  • 82.67 (n)
  • 79.47 (a)
NDUFA9 35
  • 78 (a)
OneToMany
dog
(Canis familiaris)
Mammalia NDUFA9 34
  • 87.68 (n)
  • 85.11 (a)
-- 35
  • 85 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Ndufa9 34
  • 79.34 (n)
  • 78.46 (a)
Ndufa9 16
Ndufa9 35
  • 78 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia NDUFA9 34
  • 99.29 (n)
  • 99.47 (a)
NDUFA9 35
  • 99 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Ndufa9 34
  • 78.72 (n)
  • 76.06 (a)
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 71 (a)
ManyToMany
-- 35
  • 73 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 74 (a)
OneToMany
chicken
(Gallus gallus)
Aves NDUFA9 34
  • 71.81 (n)
  • 70.25 (a)
NDUFA9 35
  • 68 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 63 (a)
ManyToMany
-- 35
  • 67 (a)
ManyToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia ndufa9 34
  • 67.2 (n)
  • 65.96 (a)
Str.8681 34
African clawed frog
(Xenopus laevis)
Amphibia MGC64316 34
zebrafish
(Danio rerio)
Actinopterygii si:ch211-251f6.5 34
  • 67.85 (n)
  • 69.7 (a)
ndufa9 35
  • 61 (a)
ManyToMany
si:ch211-251f6.5 35
  • 56 (a)
ManyToMany
wufc41f12 34
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.672 34
fruit fly
(Drosophila melanogaster)
Insecta CG6020 36
  • 44 (a)
CG6020 34
  • 50 (n)
  • 46.2 (a)
CG6020 35
  • 40 (a)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP010792 34
  • 49 (n)
  • 48.19 (a)
worm
(Caenorhabditis elegans)
Secernentea Y53G8AL.2 36
  • 41 (a)
Y53G8AL.2 34
  • 49.12 (n)
  • 43.61 (a)
Y53G8AL.2 35
  • 30 (a)
OneToMany
thale cress
(Arabidopsis thaliana)
eudicotyledons AT2G20360 34
  • 55.93 (n)
  • 50.42 (a)
rice
(Oryza sativa)
Liliopsida Os.10342 34
Os02g0816800 34
  • 53.84 (n)
  • 48.41 (a)
wheat
(Triticum aestivum)
Liliopsida Ta.5022 34
corn
(Zea mays)
Liliopsida Zm.8933 34
bread mold
(Neurospora crassa)
Ascomycetes NCU02373 34
  • 45.05 (n)
  • 36.67 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.8552 35
  • 29 (a)
OneToMany
Species where no ortholog for NDUFA9 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)

Evolution for NDUFA9 Gene

ENSEMBL:
Gene Tree for NDUFA9 (if available)
TreeFam:
Gene Tree for NDUFA9 (if available)

Paralogs for NDUFA9 Gene

Paralogs for NDUFA9 Gene

Pseudogenes.org Pseudogenes for NDUFA9 Gene

genes like me logo Genes that share paralogs with NDUFA9: view

Variants for NDUFA9 Gene

Sequence variations from dbSNP and Humsavar for NDUFA9 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs7301282 -- 4,669,520(+) ATTAT(A/T)TGAGC intron-variant
rs7302268 -- 4,679,200(+) agtat(C/G)tataa intron-variant
rs7306593 -- 4,665,241(+) aactc(C/T)ctgtt intron-variant
rs7309135 -- 4,684,286(+) TTTTC(A/C)AGCCT intron-variant
rs7310700 -- 4,675,851(+) AGACA(A/G)CAAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NDUFA9 Gene

Variant ID Type Subtype PubMed ID
nsv1036308 CNV loss 25217958
nsv1040098 CNV gain 25217958
nsv483060 CNV loss 15286789
nsv557125 CNV loss 21841781
nsv557126 CNV loss 21841781
nsv587 CNV insertion 18451855
nsv832318 CNV gain 17160897

Variation tolerance for NDUFA9 Gene

Residual Variation Intolerance Score: 80.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.74; 46.74% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for NDUFA9 Gene

Human Gene Mutation Database (HGMD)
NDUFA9
SNPedia medical, phenotypic, and genealogical associations of SNPs for
NDUFA9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NDUFA9 Gene

Disorders for NDUFA9 Gene

MalaCards: The human disease database

(4) MalaCards diseases for NDUFA9 Gene - From: OMIM, GeneTests, Orphanet, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
leigh syndrome
  • leigh syndrome due to mitochondrial complex i deficiency
leigh syndrome with leukodystrophy
  • infantile subacute necrotizing encephalopathy with leukodystrophy
mitochondrial dna-associated leigh syndrome
  • mils
mitochondrial dna deletion syndromes
  • mtdna deletion syndromes
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for NDUFA9

Genetic Association Database (GAD)
NDUFA9
Human Genome Epidemiology (HuGE) Navigator
NDUFA9
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NDUFA9
genes like me logo Genes that share disorders with NDUFA9: view

No data available for UniProtKB/Swiss-Prot and Genatlas for NDUFA9 Gene

Publications for NDUFA9 Gene

  1. Construction and evaluation of a hncDNA library of human 12p transcribed sequences derived from a somatic cell hybrid. (PMID: 8486360) Baens M. … Marynen P. (Genomics 1993) 2 3 4 65
  2. Identification of a molecular component of the mitochondrial acetyl transferase program; a novel role for GCN5L1. (PMID: 22309213) Scott I. … Sack M.N. (Biochem. J. 2012) 3 4 65
  3. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PMID: 20877624) Hendrickson S.L. … O'Brien S.J. (PLoS ONE 2010) 3 46 65
  4. The SDR (short-chain dehydrogenase/reductase and related enzymes) nomenclature initiative. (PMID: 19027726) Persson B. … Oppermann U. (Chem. Biol. Interact. 2009) 2 3 65
  5. Oxidative stress, telomere length and biomarkers of physical aging in a cohort aged 79 years from the 1932 Scottish Mental Survey. (PMID: 18977241) Starr J.M. … Deary I.J. (Mech. Ageing Dev. 2008) 3 46 65

Products for NDUFA9 Gene

Sources for NDUFA9 Gene

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