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Aliases for NDUFA6-AS1 Gene

Subcategory (RNA class) for NDUFA6-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NDUFA6-AS1 Gene

  • NDUFA6 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for NDUFA6-AS1 Gene

Previous GeneCards Identifiers for NDUFA6-AS1 Gene

  • GC22P042490
  • GC22P042492

Summaries for NDUFA6-AS1 Gene

GeneCards Summary for NDUFA6-AS1 Gene

NDUFA6-AS1 (NDUFA6 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NDUFA6-AS1 Gene

Genomics for NDUFA6-AS1 Gene

Regulatory Elements for NDUFA6-AS1 Gene

Enhancers for NDUFA6-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22F042120 1.2 Ensembl ENCODE 13.3 +29.9 29939 1.7 TBP HDAC1 PKNOX1 ZFP64 RARA POLR3A ETV6 ZNF680 ZNF362 ZNF654 SMDT1 CYP2D6 RN7SKP80 PHF5A RPL5P34 NDUFA6-AS1 RRP7BP LOC100506679 GC22P042119 LOC105373047
GH22F042176 1.5 FANTOM5 Ensembl ENCODE 10.5 +89.6 89593 8.2 HDGF TBP PKNOX1 CBX3 BMI1 YY1 ZNF121 GLIS2 GATA2 ZNF366 CYP2D6 TCF20 SMDT1 NFAM1 NDUFA6 NDUFA6-AS1 RNU6ATAC22P ENSG00000227370 MEI1 CENPM
GH22F042282 1.4 FANTOM5 Ensembl ENCODE 10.6 +192.3 192330 1.9 ELF3 MLX ARID4B NFXL1 DMAP1 ZNF48 RAD21 YY1 ZNF366 CREM SMDT1 RRP7BP NFAM1 CYP2D7 ENSG00000232710 CYP2D6 TCF20 NDUFA6 NDUFA6-AS1 RN7SKP80
GH22F042170 1.1 Ensembl ENCODE 10.6 +81.7 81730 3.7 SAP130 ZFP64 INSM2 ZNF384 ZIC2 ZNF644 RAD21 RARA ZNF664 ZFHX2 CYP2D6 CYP2D7 ENSG00000232710 NFAM1 TCF20 NDUFA6 NDUFA6-AS1 RNU6ATAC22P FAM109B SMDT1
GH22F042462 0.9 ENCODE 10.3 +371.3 371275 0.4 HDAC1 ATF1 PKNOX1 ARNT TBL1XR1 YY1 CHAMP1 ZNF766 ELK1 GATA2 NFAM1 CYP2D7 ENSG00000232710 CYP2D6 TCF20 NDUFA6 NDUFA6-AS1 LOC101927344 SERHL
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NDUFA6-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for NDUFA6-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001532956 -531 2401 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A ZNF2 YY1 SLC30A9 ZNF207

Genomic Location for NDUFA6-AS1 Gene

Chromosome:
22
Start:
42,090,931 bp from pter
End:
42,137,742 bp from pter
Size:
46,812 bases
Orientation:
Plus strand

Genomic View for NDUFA6-AS1 Gene

Genes around NDUFA6-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NDUFA6-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NDUFA6-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NDUFA6-AS1 Gene

Proteins for NDUFA6-AS1 Gene

Post-translational modifications for NDUFA6-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NDUFA6-AS1 Gene

Domains & Families for NDUFA6-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NDUFA6-AS1 Gene

Function for NDUFA6-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NDUFA6-AS1 Gene

Localization for NDUFA6-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NDUFA6-AS1 Gene

Pathways & Interactions for NDUFA6-AS1 Gene

SuperPathways for NDUFA6-AS1 Gene

No Data Available

Interacting Proteins for NDUFA6-AS1 Gene

Gene Ontology (GO) - Biological Process for NDUFA6-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NDUFA6-AS1 Gene

Transcripts for NDUFA6-AS1 Gene

mRNA/cDNA for NDUFA6-AS1 Gene

(16) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NDUFA6-AS1 Gene

No ASD Table

Relevant External Links for NDUFA6-AS1 Gene

GeneLoc Exon Structure for
NDUFA6-AS1
ECgene alternative splicing isoforms for
NDUFA6-AS1

Expression for NDUFA6-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NDUFA6-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for NDUFA6-AS1 Gene

This gene is overexpressed in Testis (x4.2).
genes like me logo Genes that share expression patterns with NDUFA6-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for NDUFA6-AS1 Gene

Orthologs for NDUFA6-AS1 Gene

Evolution for NDUFA6-AS1 Gene

ENSEMBL:
Gene Tree for NDUFA6-AS1 (if available)
TreeFam:
Gene Tree for NDUFA6-AS1 (if available)

No data available for Orthologs for NDUFA6-AS1 Gene

Paralogs for NDUFA6-AS1 Gene

No data available for Paralogs for NDUFA6-AS1 Gene

Variants for NDUFA6-AS1 Gene

Sequence variations from dbSNP and Humsavar for NDUFA6-AS1 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs116038857 -- 42,122,432(+) CCACT(C/G)TGTCC intron-variant, nc-transcript-variant
rs139360527 -- 42,121,785(+) GAAAC(A/G)TGATC intron-variant, downstream-variant-500B
rs141889263 -- 42,123,207(+) GTGCA(A/G)TGACG intron-variant
rs145339114 -- 42,122,125(+) CAGGG(A/G)CTCTC intron-variant, downstream-variant-500B
rs146364112 -- 42,124,426(+) CCTGG(-/C)CCCAC nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for NDUFA6-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv979683 CNV duplication 23825009
nsv955164 CNV deletion 24416366
nsv834210 CNV loss 17160897
nsv829243 CNV loss 20364138
nsv508737 CNV insertion 20534489
nsv498989 CNV loss 21111241
nsv3643 CNV insertion 18451855
nsv3642 CNV insertion 18451855
nsv3641 CNV deletion 18451855
nsv1139782 CNV duplication 24896259
nsv1110402 CNV duplication 24896259
nsv1109473 CNV deletion 24896259
nsv1076539 CNV duplication 25765185
esv6632 CNV loss 19470904
esv3647809 CNV loss 21293372
esv3647808 CNV loss 21293372
esv3575484 CNV gain 25503493
esv3568417 CNV loss 25503493
esv3558185 CNV deletion 23714750
esv3446082 CNV duplication 20981092
esv33893 CNV gain+loss 17666407
esv3349998 CNV duplication 20981092
esv2750689 CNV loss 17666407
esv27312 CNV gain+loss 19812545
esv2724275 CNV deletion 23290073
esv2724274 CNV deletion 23290073
esv2724272 CNV deletion 23290073
esv2724271 CNV deletion 23290073
esv2674409 CNV deletion 23128226
esv2201357 CNV deletion 18987734
esv2171396 CNV deletion 18987734
dgv841e214 CNV gain 21293372
dgv733e201 CNV deletion 23290073
dgv1319e212 CNV gain 25503493

Relevant External Links for NDUFA6-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NDUFA6-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NDUFA6-AS1 Gene

Disorders for NDUFA6-AS1 Gene

Relevant External Links for NDUFA6-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NDUFA6-AS1

No disorders were found for NDUFA6-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NDUFA6-AS1 Gene

Publications for NDUFA6-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for NDUFA6-AS1 Gene

Sources for NDUFA6-AS1 Gene

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