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Aliases for NDUFA4L2 Gene

Aliases for NDUFA4L2 Gene

  • NDUFA4, Mitochondrial Complex Associated Like 2 2 3 5
  • NADH Dehydrogenase (Ubiquinone) 1 Alpha Subcomplex, 4-Like 2 2 3
  • NADH-Ubiquinone Oxidoreductase MLRQ Subunit Homolog 2 4
  • NUOMS 3 4
  • NADH Dehydrogenase [Ubiquinone] 1 Alpha Subcomplex Subunit 4-Like 2 3
  • NADH:Ubiquinone Oxidoreductase MLRQ Subunit Homolog 3

External Ids for NDUFA4L2 Gene

Previous GeneCards Identifiers for NDUFA4L2 Gene

  • GC12M055915
  • GC12M057629
  • GC12M054667

Summaries for NDUFA4L2 Gene

GeneCards Summary for NDUFA4L2 Gene

NDUFA4L2 (NDUFA4, Mitochondrial Complex Associated Like 2) is a Protein Coding gene. Among its related pathways are Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins. and GABAergic synapse. An important paralog of this gene is NDUFA4.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NDUFA4L2 Gene

Genomics for NDUFA4L2 Gene

Regulatory Elements for NDUFA4L2 Gene

Enhancers for NDUFA4L2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G057242 1.8 FANTOM5 Ensembl ENCODE dbSUPER 5.2 -2.4 -2433 2.0 PKNOX1 ATF1 SIN3A ZNF2 ZNF48 GLIS2 GATA2 ZNF143 KLF7 ZNF548 NEMP1 ARHGAP9 BAZ2A CTDSP2 NXPH4 RN7SL809P RNU6-343P STAT2 INHBE RBMS2
GH12G057170 0.5 ENCODE dbSUPER 11.2 +69.1 69121 1.5 LRP1 MIR1228 STAT6 NDUFA4L2 GLI1 INHBE GC12P057183 PIR32415 LRP1-AS
GH12G057238 1.4 ENCODE dbSUPER 0.7 +1.1 1075 4.4 HDGF PKNOX1 CREB3L1 AGO1 ARID4B SIN3A DMAP1 ZNF2 ZNF143 FOS STAT6 NXPH4 INHBE MYO1A LRP1 ZBTB39 MARCH9 CNPY2 MARS ARHGAP9
GH12G057236 1.2 Ensembl ENCODE dbSUPER 0.7 +4.3 4333 0.3 RFX1 SUZ12 AGO1 SP2 BMI1 SSRP1 POLR2A MBD1 GABPB1 ZBTB33 MIR1228 NDUFA4L2 ENSG00000276727
GH12G057237 0.9 ENCODE dbSUPER 0.7 +3.6 3570 0.2 MAZ SP3 KLF1 SP2 ZEB2 ZNF662 ZSCAN21 SCRT2 PATZ1 ZNF600 NDUFA4L2 ENSG00000276727
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NDUFA4L2 on UCSC Golden Path with GeneCards custom track

Promoters for NDUFA4L2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000052633 362 401 HDGF PKNOX1 ATF1 SIN3A ZNF48 FOS KLF13 SP3 TBX21 ZNF579
ENSR00000268613 1562 401 HDGF PKNOX1 CREB3L1 AGO1 ARID4B SIN3A DMAP1 ZNF2 ZNF143 FOS

Genomic Location for NDUFA4L2 Gene

Chromosome:
12
Start:
57,234,903 bp from pter
End:
57,240,762 bp from pter
Size:
5,860 bases
Orientation:
Minus strand

Genomic View for NDUFA4L2 Gene

Genes around NDUFA4L2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NDUFA4L2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NDUFA4L2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NDUFA4L2 Gene

Proteins for NDUFA4L2 Gene

  • Protein details for NDUFA4L2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NRX3-NUA4L_HUMAN
    Recommended name:
    NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 4-like 2
    Protein Accession:
    Q9NRX3
    Secondary Accessions:
    • Q6IAH9

    Protein attributes for NDUFA4L2 Gene

    Size:
    87 amino acids
    Molecular mass:
    9966 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NDUFA4L2 Gene

Post-translational modifications for NDUFA4L2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for NDUFA4L2 Gene

No data available for DME Specific Peptides for NDUFA4L2 Gene

Domains & Families for NDUFA4L2 Gene

Protein Domains for NDUFA4L2 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for NDUFA4L2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9NRX3

UniProtKB/Swiss-Prot:

NUA4L_HUMAN :
  • Belongs to the complex I NDUFA4 subunit family.
Family:
  • Belongs to the complex I NDUFA4 subunit family.
genes like me logo Genes that share domains with NDUFA4L2: view

No data available for Gene Families for NDUFA4L2 Gene

Function for NDUFA4L2 Gene

Gene Ontology (GO) - Molecular Function for NDUFA4L2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004129 contributes_to cytochrome-c oxidase activity IBA --
genes like me logo Genes that share ontologies with NDUFA4L2: view
genes like me logo Genes that share phenotypes with NDUFA4L2: view

Animal Model Products

CRISPR Products

miRNA for NDUFA4L2 Gene

miRTarBase miRNAs that target NDUFA4L2

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for NDUFA4L2 Gene

Localization for NDUFA4L2 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for NDUFA4L2 gene
Compartment Confidence
mitochondrion 5
extracellular 3
plasma membrane 2

Gene Ontology (GO) - Cellular Components for NDUFA4L2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005751 mitochondrial respiratory chain complex IV IBA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with NDUFA4L2: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for NDUFA4L2 Gene

Pathways & Interactions for NDUFA4L2 Gene

genes like me logo Genes that share pathways with NDUFA4L2: view

Pathways by source for NDUFA4L2 Gene

Interacting Proteins for NDUFA4L2 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000377411%0d%0a9606.ENSP00000339720%0d%0a
Selected Interacting proteins: Q9NRX3-NUA4L_HUMAN ENSP00000377411 for NDUFA4L2 Gene via IID STRING

Gene Ontology (GO) - Biological Process for NDUFA4L2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:1902600 hydrogen ion transmembrane transport IEA --
genes like me logo Genes that share ontologies with NDUFA4L2: view

No data available for SIGNOR curated interactions for NDUFA4L2 Gene

Drugs & Compounds for NDUFA4L2 Gene

(5) Drugs for NDUFA4L2 Gene - From: DrugBank and HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
FAD Approved Pharma 0
Ubiquinone-1 Experimental Pharma 0
Ubiquinone-2 Experimental Pharma 0
NADH Nutra Target 0
NAD Pharma Full agonist, Agonist 0

(3) Additional Compounds for NDUFA4L2 Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
Fe2+
  • Armco iron
  • Carbonyl iron
  • FE
  • Ferrovac e
  • Hematite
15438-31-0
QH2
  • Coenzymes QH2
  • CoQH2
  • Reduced ubiquinone
  • Ubiquinol
  • Ubiquinone-1
56275-39-9
Sulfide
  • Sulfanediide
  • Sulfide
  • Sulfur
  • Sulphide
18496-25-8
genes like me logo Genes that share compounds with NDUFA4L2: view

Transcripts for NDUFA4L2 Gene

Unigene Clusters for NDUFA4L2 Gene

NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for NDUFA4L2 Gene

ExUns: 1 ^ 2 ^ 3a · 3b · 3c · 3d · 3e ^ 4a · 4b · 4c ^ 5 ^ 6a · 6b · 6c
SP1: - -
SP2: - -
SP3: -
SP4: - -
SP5:
SP6:

Relevant External Links for NDUFA4L2 Gene

GeneLoc Exon Structure for
NDUFA4L2
ECgene alternative splicing isoforms for
NDUFA4L2

Expression for NDUFA4L2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NDUFA4L2 Gene

mRNA differential expression in normal tissues according to GTEx for NDUFA4L2 Gene

This gene is overexpressed in Esophagus - Mucosa (x4.5).

Protein differential expression in normal tissues from HIPED for NDUFA4L2 Gene

This gene is overexpressed in Monocytes (35.8), Tlymphocyte (13.7), and Retina (13.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for NDUFA4L2 Gene



Protein tissue co-expression partners for NDUFA4L2 Gene

NURSA nuclear receptor signaling pathways regulating expression of NDUFA4L2 Gene:

NDUFA4L2

SOURCE GeneReport for Unigene cluster for NDUFA4L2 Gene:

Hs.75069

Evidence on tissue expression from TISSUES for NDUFA4L2 Gene

  • Muscle(4.3)
  • Adrenal gland(4.2)
genes like me logo Genes that share expression patterns with NDUFA4L2: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for NDUFA4L2 Gene

Orthologs for NDUFA4L2 Gene

This gene was present in the common ancestor of animals.

Orthologs for NDUFA4L2 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia NDUFA4L2 34 35
  • 91.95 (n)
dog
(Canis familiaris)
Mammalia NDUFA4L2 34 35
  • 90.8 (n)
rat
(Rattus norvegicus)
Mammalia Ndufa4l2 34
  • 90.04 (n)
mouse
(Mus musculus)
Mammalia Ndufa4l2 34 16 35
  • 88.89 (n)
lizard
(Anolis carolinensis)
Reptilia NDUFA4L2 35
  • 92 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii ndufa4l2a 34
  • 67.57 (n)
ndufa4l2 35
  • 59 (a)
OneToMany
NDUFA4L2 (1 of 2) 35
  • 54 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta CG32230 35
  • 37 (a)
OneToMany
Species where no ortholog for NDUFA4L2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for NDUFA4L2 Gene

ENSEMBL:
Gene Tree for NDUFA4L2 (if available)
TreeFam:
Gene Tree for NDUFA4L2 (if available)

Paralogs for NDUFA4L2 Gene

Paralogs for NDUFA4L2 Gene

(3) SIMAP similar genes for NDUFA4L2 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with NDUFA4L2: view

Variants for NDUFA4L2 Gene

Sequence variations from dbSNP and Humsavar for NDUFA4L2 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000009426 -- 57,236,389(+) AGGGC(G/T)GGCCA intron-variant
rs1000374107 -- 57,239,056(+) GGGAC(C/G/T)GCAGG intron-variant, upstream-variant-2KB
rs1000613648 -- 57,235,378(+) GCTTC(C/G/T)GCTGC downstream-variant-500B, utr-variant-3-prime
rs1000734887 -- 57,240,202(+) CGGAG(C/T)CGGGA intron-variant
rs1000850852 -- 57,239,309(+) CGGCG(C/T)TCGGG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for NDUFA4L2 Gene

Variant ID Type Subtype PubMed ID
dgv96n21 CNV loss 19592680
nsv482992 CNV gain+loss 15286789
nsv519293 CNV loss 19592680
nsv952189 CNV deletion 24416366

Variation tolerance for NDUFA4L2 Gene

Residual Variation Intolerance Score: 57% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.43; 9.35% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for NDUFA4L2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NDUFA4L2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NDUFA4L2 Gene

Disorders for NDUFA4L2 Gene

Relevant External Links for NDUFA4L2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NDUFA4L2

No disorders were found for NDUFA4L2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NDUFA4L2 Gene

Publications for NDUFA4L2 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  2. Gene expression profiling in the human hypothalamus-pituitary-adrenal axis and full-length cDNA cloning. (PMID: 10931946) Hu R.-M. … Chen J.-L. (Proc. Natl. Acad. Sci. U.S.A. 2000) 3 4 64
  3. Role of NADH Dehydrogenase (Ubiquinone) 1 Alpha Subcomplex 4-Like 2 in Clear Cell Renal Cell Carcinoma. (PMID: 26783287) Minton D.R. … Gudas L.J. (Clin. Cancer Res. 2016) 3 64
  4. NDUFA4L2 Fine-tunes Oxidative Stress in Hepatocellular Carcinoma. (PMID: 26819450) Lai R.K. … Wong C.C. (Clin. Cancer Res. 2016) 3 64
  5. Overexpression of NDUFA4L2 is associated with poor prognosis in patients with colorectal cancer. (PMID: 27226356) Lv Y. … Liu J.S. (ANZ J Surg 2016) 3 64

Products for NDUFA4L2 Gene

Sources for NDUFA4L2 Gene

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