NDRG3 Gene
protein-coding GIFtS: 49
GCID: GC20M035280
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NDRG family member 3
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Aliases for NDRG3 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb) About This Section
| This gene clusters with an RNA gene Subcategory (RNA class): lncRNA
Quality score for the ORGUL clustered with this gene is 3
| Aliases |
|---|
| NDRG Family Member 31 2 | | N-Myc Downstream-Regulated Gene 3 Protein2 3 | | Protein NDRG32 |
| External Ids: | HGNC: 144621 | Entrez Gene: 574462 | Ensembl: ENSG000001010797 | OMIM: 6052735 | UniProtKB: Q9UGV23 |
|---|
| | ORGUL members: | |
|---|
| NONCODE:n410908 | |
Export aliases for NDRG3 gene to outside databasesPrevious GC identifers: GC20M035008 GC20M035918 GC20M035965 GC20M034713 GC20M032016
Summaries for NDRG3 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| -- |
Genomic Views for NDRG3 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics) About This Section
| RefSeq DNA sequence:- NC_000020.10 NC_018931.1 NT_011362.10
Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the NDRG3 gene promoter: MEF-2 Pax-6 HNF-3beta LCR-F1 C/EBPalpha E47 MEF-2A Hand1 ARP-1 aMEF-2 Other transcription factors
Search SABiosciences Chromatin IP Primers for NDRG3
Epigenetics:
|  | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat NDRG3 |
Genomic Location: Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 20q11.21-q11.23 Ensembl cytogenetic band: 20q11.23 HGNC cytogenetic band: 20q11.21-q11.23NDRG3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)

GeneLoc information about chromosome 20 GeneLoc Exon Structure GeneLoc location for GC20M035280: view genomic region
(about GC identifiers)
Start:
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35,280,169 bp from pter |
End:
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35,374,481 bp from pter |
Size:
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94,313 bases |
Orientation:
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minus strand |
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Proteins for NDRG3 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
| UniProtKB/Swiss-Prot: NDRG3_HUMAN, Q9UGV2 (See
protein sequence)Recommended Name: Protein NDRG3 Size: 375 amino acids; 41409 Da
Secondary accessions: A2A2S8 E1P5U7 E1P5U8 Q5TH32 Q96PL8 Q96SM2 Q9BXY7 Q9H3N7 Q9H411 Q9H8J6Alternative splicing: 3 isoforms: Q9UGV2-1 Q9UGV2-2 Q9UGV2-3 Explore the universe of human proteins at neXtProt for NDRG3: NX_Q9UGV2
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q9UGV2 NDRG3 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins (2 alternative transcripts):
NP_071922.2 NP_114402.1 ENSEMBL proteins: ENSP00000345292 ENSP00000362909 ENSP00000352703 ENSP00000416636 ENSP00000442813 ENSP00000362878 Human Recombinant Protein Products:
Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table
NDRG3 for ontologies About GeneDecksing
NDRG3 Antibody Products: Assay Products for NDRG3: |
Protein
Domains / Families for NDRG3 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
NDRG3 for domains About GeneDecksing
1 InterPro domain/family:Graphical View of Domain Structure for InterPro Entry Q9UGV2ProtoNet protein and cluster: Q9UGV2 1 Blocks protein family: IPB004142 Ndr family
UniProtKB/Swiss-Prot: NDRG3_HUMAN, Q9UGV2Similarity: Belongs to the NDRG family |
Function for NDRG3 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Clone Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for NDRG3 (see all 5) OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for NDRG3 (see all 3) OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector (see all 2): NDRG3 (NM_022477) | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for NDRG3 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat NDRG3  |
In Situ Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NDRG3 |
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0003674 | molecular_function |
ND | -- |
NDRG3 for ontologies About GeneDecksing
Animal Models: 1 MGI mutant phenotype (inferred from 1 allele ) (MGI details for Ndrg3):
NDRG3 for phenotypes About GeneDecksing
|
Pathways & Interactions for NDRG3 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
| Unified GeneCards pathways  About this table  See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | Apoptosis and Autophagy | | | 2 | Angiogenesis | | | 3 | PI3K / Akt Signaling | |
Pathway sources See GeneCards unified pathways Show all pathways
3
Cell Signaling Technology (CST) Pathways for NDRG3
NDRG3 for pathways About GeneDecksing
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for NDRG3
STRING Interaction
Network Preview (showing 2 interactants - click image to see more details)
 5/7 Interacting proteins for NDRG3 (Q9UGV23 ENSP000003452924) via UniProtKB, MINT, STRING, and/or I2D (see all 7)About this table
Gene Ontology (GO): 3 biological process terms (GO ID links to tree view): About this table
NDRG3 for ontologies About GeneDecksing
|
Drugs & Compounds for NDRG3 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
Browse Tocris compounds for NDRG3 Search CenterWatch for drugs/clinical trials and news about NDRG3 
|
Transcripts for NDRG3 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
) About This Section
| REFSEQ mRNAs for NDRG3 gene (2 alternative transcripts): NM_022477.3 NM_032013.3 Unigene Cluster for NDRG3: NDRG family member 3 Hs.437338 [show with all ESTs]Unigene Representative Sequence: AK1280687 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000349004(uc002xfw.3 uc002xfx.3 uc010zvq.2 uc010zvr.2) ENST00000373803 ENST00000359675 ENST00000480314 ENST00000422536 ENST00000540765 ENST00000373773
Clone Products: |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for NDRG3 (see all 5) OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for NDRG3 (see all 3) OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector (see all 2): NDRG3 (NM_022477) | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for NDRG3 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat NDRG3  |
Additional cDNA sequence: AB044943.1 AF308609.1 AK023618.1 AK027665.1 AK128068.1 AK295420.1 AK295466.1 BC136489.1 BC144169.1 NR_038370.1 10 DOTS entries: DT.95086156 DT.92475313 DT.101980321 DT.92475441 DT.100647967 DT.100794465 DT.100794474 DT.97847328 DT.120833203 DT.97847330 24/197 AceView cDNA sequences (see all 197): NM_022477 AI659189 AA311302 AI027140 CA418050 BM981949 BQ009388 AA322907 BE328324 CA437797 T33083 AI435981 F09769 BU177085 AA322542 T33098 AK128068 AU132685 BQ640166 T33084 AF308609 F12132 BM663661 CA420077 GeneLoc Exon Structure
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Expression for NDRG3 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| NDRG3 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this imageBioGPS CGAP TAG: TCTACTGTTA
About this image See NDRG3 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for NDRG3
SOURCE GeneReport for Unigene cluster: Hs.437338 UniProtKB/Swiss-Prot: NDRG3_HUMAN, Q9UGV2Tissue specificity: Ubiquitous. Highly expressed in brain SABiosciences Expression via Pathway-Focused PCR Array including NDRG3:
Primer Products: |  | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for NDRG3 Browse OriGene validated miRNA SYBR primer pairs
| |  | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat NDRG3 | |  | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat NDRG3 | |  | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat NDRG3 | In Situ Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NDRG3 |
Orthologs for NDRG3 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of eukaryotes.
Orthologs for NDRG3 gene from 8/24 species (see all 24) About this table
ENSEMBL Gene Tree for NDRG3 (if available) TreeFam Gene Tree for NDRG3 (if available)  |
Paralogs for NDRG3 gene(Paralogs according to
1HomoloGene, 2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68) About This Section
| Paralogs for NDRG3 gene
- NDRG22 NDRG42 NDRG12
4 SIMAP similar genes for NDRG3 using alignment to 6 protein entries: NDRG3_HUMAN (see all proteins):NDRG1 TRG14 NDRG4 NDRG2
NDRG3 for paralogs About GeneDecksing
|
Genomic Variants for NDRG3 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical significance | Chr 20 pos | Sequence | # | AA Chg | Type | More | # | Allele freq | Pop | Total sample | More |
|---|
HapMap Linkage Disequilibrium report for NDRG3 (35280169 - 35374481 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for NDRG3: --  | SABiosciences Cancer Mutation PCR Assays |
|  | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing NDRG3 |
|
Disorders
/ Diseases for NDRG3 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
NDRG3 for disorders About GeneDecksing
OMIM gene information: 605273
OMIM disorders: --
9 diseases for NDRG3: About MalaCardsmotor peripheral neuropathy peripheral neuropathy hepatitis b neuropathy hepatocellular carcinoma hepatitis prostate cancer carcinoma prostatitis 1 disease from the University of Copenhagen DISEASES database for NDRG3:Motor peripheral neuropathy Export disorders for NDRG3 gene to outside databases
|
Publications for NDRG3 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for NDRG3 gene, integrated from 9 sources (see all 22): (articles sorted by number of sources associating them with NDRG3) | |  | Utopia: connect your pdf to the dynamic world of online information |
- Characterization and expression of three novel differentiation- related genes belong to the human NDRG gene family. (PubMed id 11936845)1, 2, 9 Qu X.... He F. (2002)
- Characterization of the human NDRG gene family: a newly identified member, NDRG4, is specifically expressed in brain and heart. (PubMed id 11352569)1, 2, 9 Zhou R.-H.... Miyata T. (2001)
- Differential expression patterns of NDRG family prote ins in the central nervous system. (PubMed id 17998568)1, 3 Okuda T....Miyata T. (2008)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
- The DNA sequence and comparative analysis of human chromosome 20. (PubMed id 11780052)1, 2 Deloukas P....Rogers J. (2001)
- N-myc downstream-regulated gene 1 is mutated in hereditary motor and sensory neuropathy-Lom. (PubMed id 10831399)1, 3 Kalaydjieva L.... Thomas P.K. (2000)
- Cloning and expression pattern of the human NDRG3 gene. (PubMed id 11406283)1, 9 Zhao W....Mao Y. (2001)
- A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (2012)
- Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)
- miR-122 inhibits viral replication and cell proliferat ion in hepatitis B virus-related hepatocellular carcinoma and targets NDRG3. (PubMed id 21725618)1 Fan C.G....Liu Y.G. (2011)
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External Searches for NDRG3 gene
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
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|
Genome Databases showing NDRG3 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing NDRG3 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing NDRG3 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| PharmGKB entry for NDRG3 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for NDRG3 gene: Search GeneIP for patents involving NDRG3
GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products for NDRG3 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
|
 | |
 | |
 |
| | | | OriGene Antibodies for NDRG3 | | OriGene shRNA RFP for NDRG3 | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for NDRG3 | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for NDRG3 | | OriGene Protein Over-expression Lysate for NDRG3 | | Browse OriGene Fluorogenic Cell Assay Kits | | OriGene siRNA for NDRG3 | | OriGene 3'-UTR Clone for NDRG3 | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for NDRG3 | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for NDRG3 | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling | | OriGene Custom Antibody Services for NDRG3 | | OriGene Custom Protein Services for NDRG3 | | OriGene Custom Immunoassay Development | | |
| |  |
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| | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat NDRG3 | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing NDRG3 | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat NDRG3 | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat NDRG3 | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat NDRG3 | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat NDRG3 |
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 |  |  |  | |
| Antibodies & Assays for NDRG3  |
| | | Search Tocris compounds for NDRG3 |
| |  |  |  |  | | | | |
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 | | NDRG3 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NDRG3 |
|  |  |  | | | Search ThermoFisher Antibodies for NDRG3 |
| | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat NDRG3 |
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