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Aliases for NDFIP2-AS1 Gene

Subcategory (RNA class) for NDFIP2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NDFIP2-AS1 Gene

  • NDFIP2 Antisense RNA 1 2 3 5
  • NDFIP2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for NDFIP2-AS1 Gene

Previous GeneCards Identifiers for NDFIP2-AS1 Gene

  • GC00U933340
  • GC13M080052

Summaries for NDFIP2-AS1 Gene

GeneCards Summary for NDFIP2-AS1 Gene

NDFIP2-AS1 (NDFIP2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for NDFIP2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NDFIP2-AS1 Gene

Genomics for NDFIP2-AS1 Gene

GeneHancer (GH) Regulatory Elements for NDFIP2-AS1 Gene

Promoters and enhancers for NDFIP2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I079480 Enhancer 0.5 ENCODE dbSUPER 550.8 +1.2 1160 0.1 NFE2 NDFIP2 NDFIP2-AS1 LOC105370274
GH13I079451 Enhancer 1.1 Ensembl ENCODE 12.8 +29.4 29367 1.3 HDAC1 PKNOX1 BMI1 ZBTB40 BATF RFX5 EGR1 ZNF143 FOS ETV6 NDFIP2 NDFIP2-AS1 LOC105370274
GH13I079522 Enhancer 0.9 ENCODE dbSUPER 12.4 -41.7 -41663 0.7 SMAD1 CBFB MAX JUNB REST ELF1 BATF MITF FOSL1 NFIC NDFIP2 NDFIP2-AS1 RBM26 RBM26-AS1 LINC01068
GH13I079524 Enhancer 0.8 ENCODE dbSUPER 11.8 -44.5 -44497 1.6 SMARCE1 MEIS2 SOX13 PKNOX1 SOX6 JUN MAX CEBPB EP300 FOSL1 LINC01068 NDFIP2-AS1 NDFIP2 RBM26
GH13I079454 Enhancer 0.7 FANTOM5 ENCODE 12.8 +25.6 25605 1.6 KLF1 HLF CEBPB CEBPG NDFIP2 NDFIP2-AS1 RBM26 LOC105370274
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around NDFIP2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NDFIP2-AS1 Gene

Genomic Locations for NDFIP2-AS1 Gene
chr13:79,477,364-79,481,231
(GRCh38/hg38)
Size:
3,868 bases
Orientation:
Minus strand
chr13:80,051,499-80,055,366
(GRCh37/hg19)

Genomic View for NDFIP2-AS1 Gene

Genes around NDFIP2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NDFIP2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NDFIP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NDFIP2-AS1 Gene

Proteins for NDFIP2-AS1 Gene

Post-translational modifications for NDFIP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NDFIP2-AS1 Gene

Domains & Families for NDFIP2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NDFIP2-AS1 Gene

Function for NDFIP2-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NDFIP2-AS1 Gene

Localization for NDFIP2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NDFIP2-AS1 Gene

Pathways & Interactions for NDFIP2-AS1 Gene

SuperPathways for NDFIP2-AS1 Gene

No Data Available

Interacting Proteins for NDFIP2-AS1 Gene

Gene Ontology (GO) - Biological Process for NDFIP2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NDFIP2-AS1 Gene

Drugs & Compounds for NDFIP2-AS1 Gene

No Compound Related Data Available

Transcripts for NDFIP2-AS1 Gene

mRNA/cDNA for NDFIP2-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NDFIP2-AS1 Gene

NDFIP2 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for NDFIP2-AS1 Gene

No ASD Table

Relevant External Links for NDFIP2-AS1 Gene

GeneLoc Exon Structure for
NDFIP2-AS1
ECgene alternative splicing isoforms for
NDFIP2-AS1

Expression for NDFIP2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NDFIP2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for NDFIP2-AS1 Gene

This gene is overexpressed in Testis (x53.0).

SOURCE GeneReport for Unigene cluster for NDFIP2-AS1 Gene:

Hs.602801
genes like me logo Genes that share expression patterns with NDFIP2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NDFIP2-AS1 Gene

Orthologs for NDFIP2-AS1 Gene

Evolution for NDFIP2-AS1 Gene

ENSEMBL:
Gene Tree for NDFIP2-AS1 (if available)
TreeFam:
Gene Tree for NDFIP2-AS1 (if available)

No data available for Orthologs for NDFIP2-AS1 Gene

Paralogs for NDFIP2-AS1 Gene

No data available for Paralogs for NDFIP2-AS1 Gene

Variants for NDFIP2-AS1 Gene

Sequence variations from dbSNP and Humsavar for NDFIP2-AS1 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000547318 -- 79,478,877(-) G/A intron_variant
rs1001479059 -- 79,480,587(-) C/T intron_variant
rs1002442379 -- 79,480,563(-) T/C intron_variant
rs1002547398 -- 79,481,531(-) T/A upstream_transcript_variant
rs1002819663 -- 79,480,318(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for NDFIP2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3632814 CNV gain 21293372
esv3632819 CNV gain 21293372
nsv523979 CNV loss 19592680
nsv832657 CNV gain 17160897

Additional Variant Information for NDFIP2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NDFIP2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NDFIP2-AS1 Gene

Disorders for NDFIP2-AS1 Gene

Additional Disease Information for NDFIP2-AS1

No disorders were found for NDFIP2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NDFIP2-AS1 Gene

Publications for NDFIP2-AS1 Gene

No publications were found for NDFIP2-AS1 Gene.

Products for NDFIP2-AS1 Gene

Sources for NDFIP2-AS1 Gene

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