Free for academic non-profit institutions. Other users need a Commercial license

Aliases for NDFIP2-AS1 Gene

Subcategory (RNA class) for NDFIP2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NDFIP2-AS1 Gene

  • NDFIP2 Antisense RNA 1 2 3 5
  • NDFIP2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for NDFIP2-AS1 Gene

Previous GeneCards Identifiers for NDFIP2-AS1 Gene

  • GC00U933340
  • GC13M080052

Summaries for NDFIP2-AS1 Gene

GeneCards Summary for NDFIP2-AS1 Gene

NDFIP2-AS1 (NDFIP2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NDFIP2-AS1 Gene

Genomics for NDFIP2-AS1 Gene

Regulatory Elements for NDFIP2-AS1 Gene

Enhancers for NDFIP2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F079451 1 Ensembl ENCODE 12.8 +29.3 29331 1.4 HDAC1 PKNOX1 TBL1XR1 SIN3A BMI1 ZBTB40 RFX5 EGR1 FOS ETV6 NDFIP2 NDFIP2-AS1 LOC105370274
GH13F079454 0.7 FANTOM5 ENCODE 12.8 +25.6 25605 1.6 CTCF KLF1 HLF CEBPB RAD21 YY1 NR2F2 SMARCA4 ATF3 POLR2A NDFIP2 NDFIP2-AS1 RBM26 LOC105370274
GH13F079522 0.8 Ensembl ENCODE 12.4 -41.7 -41664 0.7 USF2 MAX JUNB REST TBX21 EP300 RAD51 CBX5 IKZF1 STAT3 NDFIP2 NDFIP2-AS1 RBM26 RBM26-AS1 LINC01068
GH13F079424 0.2 ENCODE 12.2 +57.0 56991 0.2 CTCF ZNF362 ZNF654 TRIM22 ZNF384 REST RAD21 SMC3 PRDM10 NDFIP2 NDFIP2-AS1 LOC105370274 RBM26
GH13F079440 0.2 ENCODE 11.9 +39.7 39667 2.7 SOX13 GATAD2A ELF3 SOX5 PKNOX1 NFIA NR2F1 FOXA3 RARA ZNF610 LINC01068 NDFIP2 NDFIP2-AS1 LOC105370274
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around NDFIP2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for NDFIP2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000518122 -570 2400 PKNOX1 WRNIP1 ARID4B SIN3A FEZF1 GLI4 DMAP1 ZNF48 ZNF2 YY1

Genomic Location for NDFIP2-AS1 Gene

Chromosome:
13
Start:
79,477,364 bp from pter
End:
79,481,231 bp from pter
Size:
3,868 bases
Orientation:
Minus strand

Genomic View for NDFIP2-AS1 Gene

Genes around NDFIP2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NDFIP2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NDFIP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NDFIP2-AS1 Gene

Proteins for NDFIP2-AS1 Gene

Post-translational modifications for NDFIP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NDFIP2-AS1 Gene

Domains & Families for NDFIP2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NDFIP2-AS1 Gene

Function for NDFIP2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NDFIP2-AS1 Gene

Localization for NDFIP2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NDFIP2-AS1 Gene

Pathways & Interactions for NDFIP2-AS1 Gene

SuperPathways for NDFIP2-AS1 Gene

No Data Available

Interacting Proteins for NDFIP2-AS1 Gene

Gene Ontology (GO) - Biological Process for NDFIP2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NDFIP2-AS1 Gene

Transcripts for NDFIP2-AS1 Gene

mRNA/cDNA for NDFIP2-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NDFIP2-AS1 Gene

NDFIP2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NDFIP2-AS1 Gene

No ASD Table

Relevant External Links for NDFIP2-AS1 Gene

GeneLoc Exon Structure for
NDFIP2-AS1
ECgene alternative splicing isoforms for
NDFIP2-AS1

Expression for NDFIP2-AS1 Gene

mRNA expression in normal human tissues for NDFIP2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for NDFIP2-AS1 Gene

This gene is overexpressed in Testis (x53.0).

SOURCE GeneReport for Unigene cluster for NDFIP2-AS1 Gene:

Hs.602801
genes like me logo Genes that share expression patterns with NDFIP2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for NDFIP2-AS1 Gene

Orthologs for NDFIP2-AS1 Gene

Evolution for NDFIP2-AS1 Gene

ENSEMBL:
Gene Tree for NDFIP2-AS1 (if available)
TreeFam:
Gene Tree for NDFIP2-AS1 (if available)

No data available for Orthologs for NDFIP2-AS1 Gene

Paralogs for NDFIP2-AS1 Gene

No data available for Paralogs for NDFIP2-AS1 Gene

Variants for NDFIP2-AS1 Gene

Sequence variations from dbSNP and Humsavar for NDFIP2-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs1023293 -- 79,480,285(-) GGACT(C/G)TCCAG intron-variant, upstream-variant-2KB
rs10558361 -- 79,482,195(+) TTTTT(-/T)GGTTA intron-variant, upstream-variant-2KB
rs111739726 -- 79,481,087(+) GCCCC(-/T)CCGCG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs112200957 -- 79,482,176(+) TTTTT(C/T)TTTTT intron-variant, upstream-variant-2KB
rs11324280 -- 79,482,631(+) AGACA(-/G)GTTAT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for NDFIP2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3632814 CNV gain 21293372
esv3632819 CNV gain 21293372
nsv523979 CNV loss 19592680
nsv832657 CNV gain 17160897

Relevant External Links for NDFIP2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NDFIP2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NDFIP2-AS1 Gene

Disorders for NDFIP2-AS1 Gene

Relevant External Links for NDFIP2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NDFIP2-AS1

No disorders were found for NDFIP2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NDFIP2-AS1 Gene

Publications for NDFIP2-AS1 Gene

No publications were found for NDFIP2-AS1 Gene.

Products for NDFIP2-AS1 Gene

Sources for NDFIP2-AS1 Gene

Content
Loading form....