Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

NDC80 Gene

protein-coding   GIFtS: 60
GCID: GC18P002571

NDC80 kinetochore complex component

(Previous names: highly expressed in cancer, rich in leucine heptad repeats...)
(Previous symbol: KNTC2)
 Explore 9 diseases affiliated with
NDC80 via our new
 Human Malady Compendium 
Biological research products
for NDC80
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
NDC80 Kinetochore Complex Component1 2     Kinetochore-Associated Protein 22 3
HEC1 2 3     Retinoblastoma-Associated Protein HEC2 3
HEC11 2 3     HsHec12 3
KNTC21 2 3     Highly Expressed In Cancer, Rich In Leucine Heptad Repeats (Yeast)1
TID31 2     NDC80 Kinetochore Complex Component Homolog (S. Cerevisiae)1
HsNDC801     Highly Expressed In Cancer, Rich In Leucine Heptad Repeats2
Kinetochore Associated 21 2     Kinetochore Protein NDC80 Homolog2
Highly Expressed In Cancer Protein2 3     NDC80 Homolog, Kinetochore Complex Component2
Kinetochore Protein Hec12 3     NDC80 Kinetochore Complex Component Homolog2

External Ids:    HGNC: 169091   Entrez Gene: 104032   Ensembl: ENSG000000809867   OMIM: 6072725   UniProtKB: O147773   

Export aliases for NDC80 gene to outside databases

Previous GC identifers: GC18P002562 GC18P002532


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for NDC80:
This gene encodes a component of the NDC80 kinetochore complex. The encoded protein consists of an N-terminal
microtubule binding domain and a C-terminal coiled-coiled domain that interacts with other components of the complex.
This protein functions to organize and stabilize microtubule-kinetochore interactions and is required for proper
chromosome segregation. (provided by RefSeq, Oct 2011)

UniProtKB/Swiss-Prot: NDC80_HUMAN, O14777
Function: Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome
segregation and spindle checkpoint activity. Required for kinetochore integrity and the organization of stable
microtubule binding sites in the outer plate of the kinetochore

Gene Wiki entry for NDC80


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000018.9  NC_018929.1  NT_010859.14  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the NDC80 gene promoter:
         STAT5B   GR   CREB   Nkx3-1 v4   Pax-5   ATF-2   deltaCREB   Nkx3-1 v3   GR-alpha   IRF-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidNDC80 promoter sequence
   Search SABiosciences Chromatin IP Primers for NDC80

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat NDC80


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 18p11.32   Ensembl cytogenetic band:  18p11.32   HGNC cytogenetic band: 18p11.31

NDC80 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
NDC80 gene location

GeneLoc information about chromosome 18         GeneLoc Exon Structure

GeneLoc location for GC18P002571:  view genomic region     (about GC identifiers)

Start:
2,571,510 bp from pter      End:
2,616,634 bp from pter
Size:
45,125 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: NDC80_HUMAN, O14777 (See protein sequence)
Recommended Name: Kinetochore protein NDC80 homolog  
Size: 642 amino acids; 73913 Da
Subunit: Component of the NDC80 complex, which consists of NDC80/HEC1, CDCA1, SPBC24 and SPBC25. The NDC80 complex is
formed by two subcomplexes composed of NDC80/HEC1-CDCA1 and SPBC24-SPBC25. Each subcomplex is formed by parallel
interactions through the coiled-coil domains of individual subunits. Formation of a tetrameric complex is mediated by
interactions between the C-terminal regions of both subunits of the NDC80/HEC1-CDCA1 subcomplex and the N-terminal
regions of both subunits of the SPBC24-SPBC25 complex. The tetrameric NDC80 complex has an elongated rod-like
structure with globular domains at either end. Interacts with isoform 1 of NEK2 and ZWINT specifically during mitosis.
Interacts with CENPH and MIS12. May interact with AURKB, PSMC2, PSMC5 and SMC1A. May interact with RB1 during G2 phase
and mitosis
Subcellular location: Nucleus. Chromosome, centromere, kinetochore. Note=Localizes to kinetochores from late prophase
to anaphase. Localizes specifically to the outer plate of the kinetochore
Developmental stage: Expression peaks in mitosis
3 PDB 3D structures from and Proteopedia for NDC80:
2IGP (3D)        2VE7 (3D)        3IZ0 (3D)    
Secondary accessions: Q6PJX2

Explore the universe of human proteins at neXtProt for NDC80: NX_O14777

Post-translational modifications:

  • Phosphorylation begins in S phase of the cell cycle and peaks in mitosis. Phosphorylated by NEK2. May also be
  • phosphorylated by AURKA and AURKB1
  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_O14777

  • NDC80 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_006092.1  
    ENSEMBL proteins: 
     ENSP00000261597   ENSP00000461227   ENSP00000458236  
    Reactome Protein details: O14777
    Human Recombinant Protein Products: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    OriGene Purified Protein: NDC80
    Browse OriGene Protein Over-expression Lysates
    OriGene Custom Protein Services for NDC80 
    GenScript Custom Purified and Recombinant Proteins Services for NDC80
    Novus Biologicals NDC80 Proteins
    Novus Biologicals NDC80 Lysates
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for NDC80

    Gene Ontology (GO): 5/7 cellular component terms (GO ID links to tree view) (see all 7):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000775chromosome, centromeric region TAS9315664
    GO:0000776kinetochore IDA19468067
    GO:0000777condensed chromosome kinetochore IDA14699129
    GO:0000942condensed nuclear chromosome outer kinetochore IDA18195732
    GO:0005634nucleus TAS9315664


    NDC80 for ontologies           About GeneDecksing



    NDC80 Antibody Products: 
    Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Browse R&D Systems for Antibodies
    OriGene Antibodies (see all 2): NDC80
    OriGene Custom Antibody Services for NDC80 
    GenScript Superior Antibodies for NDC80
    Novus Biologicals NDC80 Antibodies
    Abcam antibodies for NDC80 
    Uscn Antibodies for NDC80
    ThermoFisher Antibodies for NDC80

    Assay Products for NDC80: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for NDC80
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for NDC80


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    NDC80 for domains           About GeneDecksing

    1 InterPro domain/family:
     IPR005550 Kinetochore_Ndc80

    Graphical View of Domain Structure for InterPro Entry O14777

    ProtoNet protein and cluster: O14777

    UniProtKB/Swiss-Prot: NDC80_HUMAN, O14777
    Similarity: Belongs to the NDC80/HEC1 family


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: NDC80_HUMAN, O14777
    Function: Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome
    segregation and spindle checkpoint activity. Required for kinetochore integrity and the organization of stable
    microtubule binding sites in the outer plate of the kinetochore

    miRNA
    Products:
        
    OriGene 3'-UTR Clone: NDC80
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat NDC80
    Search QIAGEN for miScript miRNA Assays for microRNAs that regulate NDC80
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for NDC80 (see all 7)
    OriGene shRNA RFP: NDC80
    OriGene siRNA: NDC80
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat NDC80

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for NDC80

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for NDC80 (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for NDC80
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: NDC80 (NM_006101)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for NDC80
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat NDC80 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for NDC80
    Search LifeMap BioReagents cell lines for NDC80

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NDC80

    Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding IPI--


    NDC80 for ontologies           About GeneDecksing


    7 GenomeRNAi human phenotypes for NDC80:
     Cell cycle / mitosis defect  Cell division defect  Decreased cell number, increas  Decreased viability of wild-ty 
     Increased Salmonella enterica   Increased gamma-H2AX phosphory  Increased number of mitotic ce 


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/6 super-pathways (see all 6About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1M Phase
    M Phase1.00
    Mitotic Anaphase0.85
    Mitotic M-M/G1 phases0.88
    Separation of Sister Chromatids0.80
    Mitotic Metaphase and Anaphase0.85
    2Resolution of Sister Chromatid Cohesion
    Resolution of Sister Chromatid Cohesion1.00
    Mitotic Prometaphase0.93
    Kinetochore assembly0.96
    3Cell cycle_Spindle assembly and chromosome separation
    Cell cycle_Spindle assembly and chromosome separation1.00
    Cell cycle Spindle assembly and chromosome separation0.94
    4Cell Cycle
    Cell Cycle1.00
    Cell Cycle, Mitotic0.84
    5Aurora B signaling
    Aurora B signaling1.00

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    1 EMD Millipore Pathway for NDC80
        Cell cycle Spindle assembly and chromosome separation


    1 GeneGo (Thomson Reuters) Pathway for NDC80
        Cell cycle Spindle assembly and chromosome separation

    2 BioSystems Pathways for NDC80 
        PLK1 signaling events
    Aurora B signaling

    5/10        Reactome Pathways for NDC80 (see all 10)
        Mitotic Metaphase and Anaphase
    Mitotic Prometaphase
    Resolution of Sister Chromatid Cohesion
    Mitotic Anaphase
    Cell Cycle



    NDC80 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for NDC80

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/822 Interacting proteins for NDC80 (O147771, 2, 3 ENSP000002615974) via UniProtKB, MINT, STRING, and/or I2D (see all 822)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    BUB1O436832, 3, ENSP000003025304MINT-7945693 MINT-7947479 I2D: score=2 STRING: ENSP00000302530
    PLK1P533502, 3, ENSP000003000934MINT-7945693 MINT-7947479 I2D: score=1 STRING: ENSP00000300093
    BLOC1S6Q9UL452, 3, ENSP000002205314MINT-66567 I2D: score=5 STRING: ENSP00000220531
    CALCOCO1Q9P1Z22, 3, ENSP000002620594MINT-68257 I2D: score=5 STRING: ENSP00000262059
    CCDC53Q9Y3C02, 3, ENSP000002400794MINT-66964 I2D: score=5 STRING: ENSP00000240079
    About this table

    Gene Ontology (GO): 5/13 biological process terms (GO ID links to tree view) (see all 13):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000070mitotic sister chromatid segregation TAS9315664
    GO:0000087M phase of mitotic cell cycle TAS--
    GO:0000132establishment of mitotic spindle orientation IMP19468067
    GO:0000236mitotic prometaphase TAS--
    GO:0000278mitotic cell cycle TAS--


    NDC80 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for NDC80
    Search CenterWatch for drugs/clinical trials and news about NDC80 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for NDC80 gene: 
    NM_006101.2  

    Unigene Cluster for NDC80:

    NDC80 kinetochore complex component homolog (S. cerevisiae)
    Hs.414407  [show with all ESTs]
    Unigene Representative Sequence: NM_006101
    5 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000261597(uc002kli.3) ENST00000575515 ENST00000576274 ENST00000574567
    ENST00000574096

    miRNA
    Products:
         
    OriGene 3'-UTR Clone: NDC80
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat NDC80
    Search QIAGEN for miScript miRNA Assays for microRNAs that regulate NDC80
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for NDC80 (see all 7)
    OriGene shRNA RFP: NDC80
    OriGene siRNA: NDC80
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat NDC80
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for NDC80 (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for NDC80
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: NDC80 (NM_006101)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for NDC80
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat NDC80 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for NDC80
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat NDC80
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat NDC80
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat NDC80

    Additional cDNA sequence: 

    AF017790.1 AK289396.1 AK313184.1 BC005239.1 BC010171.2 BC035617.1 

    7 DOTS entries:

    DT.413766  DT.91875217  DT.75101903  DT.91766976  DT.100765539  DT.121096331  DT.92062162 

    24/120 AceView cDNA sequences (see all 120):

    BI087094 BU507911 BQ776118 BQ425406 BC005239 BF447144 AA639709 BC035617 
    AA857356 CR609890 AI866885 BU633554 BX284007 CA446863 AL531915 NM_006101 
    BF667950 AL710845 BE889796 BQ233581 AI954614 AI913466 BI825656 AA211359 

    GeneLoc Exon Structure

    2 Alternative Splicing Database (ASD) splice patterns (SP) for NDC80    About this scheme

    ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9a · 9b ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17
    SP1:                                                  -                                                         
    SP2:                                                              -                                             


    ECgene alternative splicing isoforms for NDC80

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    NDC80 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: TATATATATC

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image

    NDC80 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    1 LifeMap In Vivo Development Anatomical Compartment/Cell 
    Tissue Anatomical Compartment CellCategory (developmental path)
    KidneyS-shaped BodyKidney Endothelial CellsEndothelium
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization
    Stem Cell Differentiation: 1 LifeMap Cell 
    NameCategory
    PureStem™ progenitor E44 (Embryonic Progenitor Cell)

    See NDC80 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for NDC80

    SOURCE GeneReport for Unigene cluster: Hs.414407
        SABiosciences Custom PCR Arrays for NDC80
    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for NDC80
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat NDC80
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat NDC80
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat NDC80
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NDC80

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for NDC80 gene from 10/31 species (see all 31)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Ndc801 , 5 NDC80 homolog, kinetochore complex component (S. cerevisiae)1, 5 84.16(n)1
    83.96(a)1
      17 (41.87 cM)5
    670521  NM_023294.21  NP_075783.21 
     714961005 
    chicken
    (Gallus gallus)
    Aves NDC801 NDC80 homolog, kinetochore complex component (S. cerevisiae) 73.27(n)
    71.86(a)
      395134  NM_204477.2  NP_989808.2 
    lizard
    (Anolis carolinensis)
    Reptilia NDC806
    --
    55(a)
    1 ↔ 1
    4(40276698-40321276)
    African clawed frog
    (Xenopus laevis)
    Amphibia AY168013.12   -- 74.45(n)    AY168013.1 
    zebrafish
    (Danio rerio)
    Actinopterygii ndc801 NDC80 homolog, kinetochore complex component (S. cerevisiae) 55.69(n)
    46.66(a)
      445386  NM_001003863.1  NP_001003863.1 
    honey bee
    (Apis mellifera)
    Insecta --
    --
    9(a)
    1 ↔ 1
    Group10.17(94812-100134)
    worm
    (Caenorhabditis elegans)
    Secernentea ndc-801 Protein NDC-80 43.33(n)
    24.9(a)
      177873  NM_069429.3  NP_501830.1 
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes TID3(YIL144W)4
    TID31
    Component of the evolutionarily conserved kinetochore-associated more4
    Tid3p1
    41.9(n)1
    23.08(a)1
      9(78074-80149)4
    8546621, 4  NP_012122.31  NP_012122.14 
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons AT3G546301 kinetochore protein NDC80 41.92(n)
    27.63(a)
      824628  NM_115320.2  NP_191024.1 
    rice
    (Oryza sativa)
    Liliopsida Os08g04684001 hypothetical protein 38.83(n)
    25.86(a)
      4345797  NM_001068543.1  NP_001062008.1 


    ENSEMBL Gene Tree for NDC80 (if available)
    TreeFam Gene Tree for NDC80 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/801 NCBI SNPs in NDC80 are shown (see all 801    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 18 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs72278631,2
    C,A,--2569673(+) GCACAC/GATCAT 2 -- int1 us2k1 tfbs30--------
    rs761115731,2
    --2569740(+) TCCCCA/GTATCT 2 -- us2k1 int11Minor allele frequency- G:0.01EA 120
    rs1427497571,2
    --2569771(+) AGAGAC/TGCTGC 2 -- us2k1 int10--------
    rs26441881,2
    C,F,O,A,H,--2569906(+) GAAATG/TAATAG 2 -- us2k1 int117Minor allele frequency- T:0.06NA NS EA WA CSA 695
    rs743375071,2
    F,--2569985(+) AAGAGT/ACACCA 2 -- int1 us2k11Minor allele frequency- A:0.14EA 120
    rs1510399741,2
    --2570008(+) CACCCC/TGGCTG 2 -- us2k1 int10--------
    rs18785531,2
    C,F,O,A,H,--2570155(-) AGGATG/AATCAC 2 -- us2k1 int1 tfbs328Minor allele frequency- A:0.20NA EA MN NS WA CSA 3202
    rs1866206301,2
    --2570174(+) TTGGAC/GTCTAG 2 -- int1 us2k10--------
    rs1408729221,2
    --2570196(+) ACAACA/CGGAAC 2 -- us2k1 int10--------
    rs1479370621,2
    --2570308(+) GGAAAC/TTGGCA 2 -- us2k1 int10--------

    HapMap Linkage Disequilibrium report for NDC80 (2571510 - 2616634 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 4 variations for NDC80
         1 CNV: 102576
         3 Indels: 26020 11913 45636

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing NDC80
    DNA2.0 Custom Variant and Variant Library Synthesis for NDC80

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    NDC80 for disorders           About GeneDecksing

    OMIM gene information: 607272    OMIM disorders: --

    9 diseases for NDC80:    About MalaCards
    retinoblastoma    congenital disorder of glycosylation    gallbladder carcinoma    endometrial cancer
    gastric cancer    breast carcinoma    breast cancer    carcinoma
    malaria

    1 Novoseek disease relationship for NDC80 gene    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    cancer 17.9 4 16732327 (1), 12386167 (1), 17330085 (1), 17822787 (1)

    Human Genome Epidemiology (HuGE) Navigator: NDC80 (3 documents)

    Export disorders for NDC80 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for NDC80 gene, integrated from 9 sources (see all 75):
    (articles sorted by number of sources associating them with NDC80)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. HEC, a novel nuclear protein rich in leucine heptad repeats specifically involved in mitosis. (PubMed id 9315664)1, 2, 3, 9 Chen Y.... Lee W.-H. (1997)
    2. Role of Hec1 in spindle checkpoint signaling and kinetochore recruitment of Mad1/Mad2. (PubMed id 12351790)1, 2, 3 Martin-Lluesma S.... Nigg E.A. (2002)
    3. Phosphorylation of the mitotic regulator protein Hec1 by Nek2 kinase is essential for faithful chromosome segregation. (PubMed id 12386167)1, 2, 9 Chen Y.... Lee W.-H. (2002)
    4. Hec1 sequentially recruits Zwint-1 and ZW10 to kinetochores for faithful chromosome segregation and spindle checkpoint control. (PubMed id 16732327)1, 2, 9 Lin Y.-T.... Lee W.-H. (2006)
    5. Sgt1 is required for human kinetochore assembly. (PubMed id 15133482)1, 2, 9 Steensgaard P.... Musacchio A. (2004)
    6. Hec1p, an evolutionarily conserved coiled-coil protein, modulates chromosome segregation through interaction with SMC proteins. (PubMed id 10409732)1, 2, 9 Zheng L.... Lee W.-H. (1999)
    7. Polo-like kinase 1 creates the tension-sensing 3F3/2 phosphoepitope and modulates the association of spindle-checkpoint proteins at kinetochores. (PubMed id 15964272)1, 2 Ahonen L.J.... Gorbsky G.J. (2005)
    8. Hec1 and Nuf2 are core components of the kinetochore outer plate essential for organizing microtubule attachment sites. (PubMed id 15548592)1, 2 DeLuca J.G.... McEwen B.F. (2005)
    9. ZW10 links mitotic checkpoint signaling to the structural kinetochore. (PubMed id 15824131)1, 2 Kops G.J.P.L.... Cleveland D.W. (2005)
    10. The functional region of CENP-H interacts with the Nuf2 complex that localizes to centromere during mitosis. (PubMed id 15713649)1, 2 Mikami Y.... Fukagawa T. (2005)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 10403 HGNC: 16909 AceView: KNTC2 Ensembl:ENSG00000080986 euGenes: HUgn10403
    ECgene: NDC80 H-InvDB: NDC80

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for NDC80 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for NDC80 gene:
    Search GeneIP for patents involving NDC80

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
    In Situ Hybridization Assays from
    Advanced Cell Diagnostics
    About This Section

     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Browse Antibodies   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
     OriGene Antibodies for NDC80   OriGene shRNA RFP for NDC80  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for NDC80   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for NDC80  
     Browse OriGene Protein Over-expression Lysates   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for NDC80   OriGene 3'-UTR Clone for NDC80  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for NDC80   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for NDC80  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     OriGene Purified Protein for NDC80   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for NDC80   OriGene Custom Protein Services for NDC80  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat NDC80
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing NDC80
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat NDC80
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat NDC80
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat NDC80
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat NDC80
     GenScript Custom Purified and Recombinant Proteins Services for NDC80 GenScript cDNA clones with any tag delivered in your preferred vector for NDC80
     GenScript Custom Assay Services for NDC80 GenScript Superior Antibodies for NDC80
     GenScript Custom overexpressing Cell Line Services for NDC80 CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Search for Antibodies & Assays

     Regulatory tfbs in NDC80 promoter
     Search Chromatin IP Primers for NDC80
     RT2 qPCR Primer Assay in human, mouse, rat NDC80
     GNC Network for NDC80
     SABiosciences Custom PCR Arrays for NDC80
     Search Tocris compounds for NDC80
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological cDNA Clones
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     NDC80 antibodies
     NDC80 proteins
     NDC80 lysates
     Antibodies for NDC80
     See all of Abcam's Antibodies, Kits and Proteins for NDC80
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins




     NDC80 Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for NDC80
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NDC80
     Browse SwitchGear 3'UTR luciferase reporter plasmids for NDC80
     SwitchGear Promoter luciferase reporter plasmids for NDC80
     ThermoFisher Antibodies for NDC80
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat NDC80
           
    GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 27 Apr 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      NDC80 gene at Home site.
    hostname: 356977-web1.xennexinc.com index build: 100 solr: 1.4