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Aliases for NCRUPAR Gene

Subcategory (RNA class) for NCRUPAR Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for NCRUPAR Gene

  • Non-Protein Coding RNA, Upstream Of F2R/PAR1 2 3
  • Noncoding RNA Upstream Of The PAR-1 2 3
  • Non-Protein Coding RNA, Upstream Of F2R/PAR1 Conserved Region 2 5
  • Non-Protein Coding RNA 193 2
  • NCRNA00193 3
  • NCRUPAR_2 5
  • NcR-UPAR 3

External Ids for NCRUPAR Gene

ORGUL Members for NCRUPAR Gene

Previous GeneCards Identifiers for NCRUPAR Gene

  • GC00U928279
  • GC05U901352
  • GC05P076007

Summaries for NCRUPAR Gene

Entrez Gene Summary for NCRUPAR Gene

  • This non-coding RNA gene has been reported to have a positive regulatory affect during embryogenesis on the adjacent coagulation factor II (thrombin) receptor gene by Madamanchi et. al (PMID:12084570). [provided by RefSeq, Aug 2012]

GeneCards Summary for NCRUPAR Gene

NCRUPAR (Non-Protein Coding RNA, Upstream Of F2R/PAR1) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NCRUPAR Gene

Genomics for NCRUPAR Gene

Genomic Location for NCRUPAR Gene

Chromosome:
5
Start:
76,712,403 bp from pter
End:
76,712,888 bp from pter
Size:
486 bases
Orientation:
Plus strand

Genomic View for NCRUPAR Gene

Genes around NCRUPAR on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NCRUPAR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NCRUPAR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NCRUPAR Gene

No data available for Regulatory Elements for NCRUPAR Gene

Proteins for NCRUPAR Gene

Post-translational modifications for NCRUPAR Gene

No Post-translational modifications

No data available for DME Specific Peptides for NCRUPAR Gene

Domains & Families for NCRUPAR Gene

Gene Families for NCRUPAR Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with NCRUPAR: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NCRUPAR Gene

Function for NCRUPAR Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NCRUPAR Gene

Localization for NCRUPAR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NCRUPAR Gene

Pathways & Interactions for NCRUPAR Gene

SuperPathways for NCRUPAR Gene

No Data Available

Interacting Proteins for NCRUPAR Gene

Gene Ontology (GO) - Biological Process for NCRUPAR Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NCRUPAR Gene

Drugs & Compounds for NCRUPAR Gene

No Compound Related Data Available

Transcripts for NCRUPAR Gene

mRNA/cDNA for NCRUPAR Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NCRUPAR Gene

No ASD Table

Relevant External Links for NCRUPAR Gene

GeneLoc Exon Structure for
NCRUPAR
ECgene alternative splicing isoforms for
NCRUPAR

Expression for NCRUPAR Gene

No Expression Related Data Available

In Situ Assay Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for NCRUPAR Gene

Orthologs for NCRUPAR Gene

Evolution for NCRUPAR Gene

ENSEMBL:
Gene Tree for NCRUPAR (if available)
TreeFam:
Gene Tree for NCRUPAR (if available)

No data available for Orthologs for NCRUPAR Gene

Paralogs for NCRUPAR Gene

No data available for Paralogs for NCRUPAR Gene

Variants for NCRUPAR Gene

Sequence variations from dbSNP and Humsavar for NCRUPAR Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs27950 -- 76,710,617(+) CCTAA(A/G)TCATA upstream-variant-2KB
rs27133 -- 76,713,238(+) AACTC(C/T)GCCTC downstream-variant-500B
rs3053196 -- 76,713,148(+) ttttt(-/TTT)gcttt downstream-variant-500B
rs4703716 -- 76,711,917(+) agcac(C/T)gctag upstream-variant-2KB
rs6887764 -- 76,712,516(+) CGGGC(A/G)GATCA nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for NCRUPAR Gene

Variant ID Type Subtype PubMed ID
dgv6186n71 CNV Gain 21882294

Relevant External Links for NCRUPAR Gene

HapMap Linkage Disequilibrium report
NCRUPAR

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NCRUPAR Gene

Disorders for NCRUPAR Gene

Relevant External Links for NCRUPAR

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NCRUPAR

No disorders were found for NCRUPAR Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NCRUPAR Gene

Publications for NCRUPAR Gene

  1. A noncoding RNA regulates human protease-activated receptor-1 gene during embryogenesis. (PMID: 12084570) Madamanchi N.R. … Aaron J. (Biochim. Biophys. Acta 2002) 2 3 67
  2. Downregulation of a long noncoding RNA-ncRuPAR contributes to tumor inhibition in colorectal cancer. (PMID: 25119598) Yan B. … Liu L. (Tumour Biol. 2014) 3

Products for NCRUPAR Gene

Sources for NCRUPAR Gene

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