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Aliases for NCRNA00250 Gene

Subcategory (RNA class) for NCRNA00250 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for NCRNA00250 Gene

  • Non-Protein Coding RNA 250 3 5
  • C8orf24 3

External Ids for NCRNA00250 Gene

Previous GeneCards Identifiers for NCRNA00250 Gene

  • GC08U901454

Summaries for NCRNA00250 Gene

GeneCards Summary for NCRNA00250 Gene

NCRNA00250 (Non-Protein Coding RNA 250) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NCRNA00250 Gene

Genomics for NCRNA00250 Gene

Regulatory Elements for NCRNA00250 Gene

Enhancers for NCRNA00250 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F134837 0.6 ENCODE 24.7 +0.2 222 1.5 OSR2 ZFP69B ATF1 ATF3 GLIS1 NFE2 CREM ATF2 ZBTB20 NCRNA00250 ZFAT MIR30B MIR30D LOC101927845
GH08F134814 0.5 ENCODE 7.4 -23.4 -23423 0.9 SMARCA4 CEBPA KLF9 FOXJ2 ENSG00000259820 ZFAT NCRNA00250 MIR30D LOC102723694
GH08F134870 0.6 ENCODE 4.5 +33.2 33241 1.0 ATF3 CEBPA MAX CEBPB CEBPG MIR30B NCRNA00250 PIR33431 GC08M134943
GH08F134839 0.6 ENCODE 0.8 +1.7 1651 0.1 ZNF263 ZNF316 HMBOX1 BACH1 EMSY WT1 ZFAT MIR30B NCRNA00250 LOC101927845
GH08F134841 0.5 ENCODE 0.8 +3.2 3248 0.1 SOX13 SOX5 NFIA NR2F2 ZFAT MIR30B NCRNA00250 LOC101927845
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NCRNA00250 on UCSC Golden Path with GeneCards custom track

Genomic Location for NCRNA00250 Gene

Chromosome:
8
Start:
134,838,069 bp from pter
End:
134,842,637 bp from pter
Size:
4,569 bases
Orientation:
Plus strand

Genomic View for NCRNA00250 Gene

Genes around NCRNA00250 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NCRNA00250 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NCRNA00250 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NCRNA00250 Gene

Proteins for NCRNA00250 Gene

Post-translational modifications for NCRNA00250 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NCRNA00250 Gene

Domains & Families for NCRNA00250 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NCRNA00250 Gene

Function for NCRNA00250 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NCRNA00250 Gene

Localization for NCRNA00250 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NCRNA00250 Gene

Pathways & Interactions for NCRNA00250 Gene

SuperPathways for NCRNA00250 Gene

No Data Available

Interacting Proteins for NCRNA00250 Gene

Gene Ontology (GO) - Biological Process for NCRNA00250 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NCRNA00250 Gene

Transcripts for NCRNA00250 Gene

mRNA/cDNA for NCRNA00250 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NCRNA00250 Gene

No ASD Table

Relevant External Links for NCRNA00250 Gene

GeneLoc Exon Structure for
NCRNA00250

Expression for NCRNA00250 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NCRNA00250 Gene

genes like me logo Genes that share expression patterns with NCRNA00250: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for NCRNA00250 Gene

Orthologs for NCRNA00250 Gene

Evolution for NCRNA00250 Gene

ENSEMBL:
Gene Tree for NCRNA00250 (if available)
TreeFam:
Gene Tree for NCRNA00250 (if available)

No data available for Orthologs for NCRNA00250 Gene

Paralogs for NCRNA00250 Gene

No data available for Paralogs for NCRNA00250 Gene

Variants for NCRNA00250 Gene

Sequence variations from dbSNP and Humsavar for NCRNA00250 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs10096954 -- 134,837,598(+) GAAAA(A/C)TGTTA upstream-variant-2KB
rs113882599 -- 134,836,244(+) GTTGG(A/C)CATGC upstream-variant-2KB
rs114098674 -- 134,837,145(+) ACTTC(A/G)TTGAG upstream-variant-2KB
rs114331235 -- 134,837,680(+) AATAC(A/C)CACAT upstream-variant-2KB
rs114802000 -- 134,840,452(+) TGAGG(C/T)TTGGG intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for NCRNA00250 Gene

Disorders for NCRNA00250 Gene

Relevant External Links for NCRNA00250

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NCRNA00250

No disorders were found for NCRNA00250 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NCRNA00250 Gene

Publications for NCRNA00250 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for NCRNA00250 Gene

Sources for NCRNA00250 Gene

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