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Aliases for NCOA7-AS1 Gene

Subcategory (RNA class) for NCOA7-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NCOA7-AS1 Gene

  • NCOA7 Antisense RNA 1 2 3 5

External Ids for NCOA7-AS1 Gene

Previous GeneCards Identifiers for NCOA7-AS1 Gene

  • GC06M126120
  • GC00U935729

Summaries for NCOA7-AS1 Gene

GeneCards Summary for NCOA7-AS1 Gene

NCOA7-AS1 (NCOA7 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for NCOA7-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NCOA7-AS1 Gene

Genomics for NCOA7-AS1 Gene

GeneHancer (GH) Regulatory Elements for NCOA7-AS1 Gene

Promoters and enhancers for NCOA7-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I125817 Enhancer 1.1 Ensembl ENCODE dbSUPER 550.8 -0.5 -510 2.9 SOX13 FOXA2 ZNF473 TAF1 CEBPG GATA3 CBFA2T2 HOMEZ FOXA3 HLF NCOA7-AS1 NCOA7 RN7SKP56
GH06I125788 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 13.3 +27.0 26961 6.3 HDGF PKNOX1 SMAD1 FOXA2 ARNT ARID4B FEZF1 ZNF2 ZNF766 ZNF213 NCOA7 HEY2 RNF217 HINT3 NCOA7-AS1 LOC105377986 TRMT11
GH06I125917 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.4 -101.1 -101067 4.3 HDGF FOXA2 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 IRF4 YY1 NCOA7 HINT3 NCOA7-AS1 PIR57980 PIR42096
GH06I125940 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.1 -126.1 -126058 9.8 HDGF PKNOX1 FOXA2 MLX ARNT ARID4B FEZF1 DMAP1 YY1 ZNF766 RNF217 CENPW NCOA7-AS1 HEY2 LOC105377986 NCOA7 TRMT11 PIR42096 HINT3
GH06I125797 Enhancer 1.2 Ensembl ENCODE dbSUPER 13.4 +20.2 20204 1.9 HDGF PKNOX1 BMI1 FEZF1 BATF IRF4 ZNF350 ATF7 BCLAF1 IKZF2 NCOA7-AS1 HINT3 NCOA7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around NCOA7-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NCOA7-AS1 Gene

Genomic Locations for NCOA7-AS1 Gene
chr6:125,797,856-125,818,858
(GRCh38/hg38)
Size:
21,003 bases
Orientation:
Minus strand

Genomic View for NCOA7-AS1 Gene

Genes around NCOA7-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NCOA7-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NCOA7-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NCOA7-AS1 Gene

Proteins for NCOA7-AS1 Gene

Post-translational modifications for NCOA7-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NCOA7-AS1 Gene

Domains & Families for NCOA7-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NCOA7-AS1 Gene

Function for NCOA7-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NCOA7-AS1 Gene

Localization for NCOA7-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NCOA7-AS1 Gene

Pathways & Interactions for NCOA7-AS1 Gene

SuperPathways for NCOA7-AS1 Gene

No Data Available

Interacting Proteins for NCOA7-AS1 Gene

Gene Ontology (GO) - Biological Process for NCOA7-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NCOA7-AS1 Gene

Drugs & Compounds for NCOA7-AS1 Gene

No Compound Related Data Available

Transcripts for NCOA7-AS1 Gene

mRNA/cDNA for NCOA7-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NCOA7-AS1 Gene

No ASD Table

Relevant External Links for NCOA7-AS1 Gene

GeneLoc Exon Structure for
NCOA7-AS1
ECgene alternative splicing isoforms for
NCOA7-AS1

Expression for NCOA7-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NCOA7-AS1 Gene

genes like me logo Genes that share expression patterns with NCOA7-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NCOA7-AS1 Gene

Orthologs for NCOA7-AS1 Gene

Evolution for NCOA7-AS1 Gene

ENSEMBL:
Gene Tree for NCOA7-AS1 (if available)
TreeFam:
Gene Tree for NCOA7-AS1 (if available)

No data available for Orthologs for NCOA7-AS1 Gene

Paralogs for NCOA7-AS1 Gene

No data available for Paralogs for NCOA7-AS1 Gene

Variants for NCOA7-AS1 Gene

Sequence variations from dbSNP and Humsavar for NCOA7-AS1 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000237031 -- 125,815,585(-) T/A intron_variant
rs1000242693 -- 125,816,305(-) A/C intron_variant
rs1000415845 -- 125,809,615(-) T/C intron_variant
rs1000562733 -- 125,803,956(-) T/C intron_variant
rs1000612875 -- 125,810,698(-) T/A intron_variant

Additional Variant Information for NCOA7-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NCOA7-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NCOA7-AS1 Gene

Disorders for NCOA7-AS1 Gene

Additional Disease Information for NCOA7-AS1

No disorders were found for NCOA7-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NCOA7-AS1 Gene

Publications for NCOA7-AS1 Gene

  1. Analysis of long non-coding RNA expression profiles in gastric cancer. (PMID: 23801869) Cao WJ … Zhang ZY (World journal of gastroenterology 2013) 2 3 58

Products for NCOA7-AS1 Gene

Sources for NCOA7-AS1 Gene

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