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Aliases for NCOA7-AS1 Gene

Subcategory (RNA class) for NCOA7-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NCOA7-AS1 Gene

  • NCOA7 Antisense RNA 1 2 3 5

External Ids for NCOA7-AS1 Gene

Previous GeneCards Identifiers for NCOA7-AS1 Gene

  • GC06M126120
  • GC00U935729

Summaries for NCOA7-AS1 Gene

GeneCards Summary for NCOA7-AS1 Gene

NCOA7-AS1 (NCOA7 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NCOA7-AS1 Gene

Genomics for NCOA7-AS1 Gene

Regulatory Elements for NCOA7-AS1 Gene

Enhancers for NCOA7-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F125797 1.1 Ensembl ENCODE 13.3 +20.2 20158 2.2 HDGF TBP PKNOX1 TBL1XR1 BMI1 FEZF1 EGR1 CBX5 CREM OVOL3 NCOA7-AS1 HINT3 LOC643623 NCOA7
GH06F125795 0.6 Ensembl 13.3 +23.3 23258 0.4 MAFK NCOA7-AS1 HINT3 NCOA7
GH06F125788 1.1 FANTOM5 ENCODE 13.3 +27.0 26961 6.3 HDGF PKNOX1 ARNT CREB3L1 ARID4B FEZF1 ZNF2 ZNF766 ZNF143 FOS HEY2 HINT3 NCOA7-AS1 LOC105377986 NCOA7 TRMT11
GH06F125843 1.1 FANTOM5 Ensembl ENCODE 11.7 -26.3 -26345 4.4 ZFP64 BACH1 ZNF664 ZNF316 PRDM10 ZNF600 NFE2 MAFK ZBTB20 NFE2L2 NCOA7-AS1 HINT3 HEY2 ENSG00000226409 NCOA7 RN7SKP56
GH06F125858 0.2 ENCODE 11.3 -40.1 -40052 0.2 CTCF CBX3 SAP130 ARID4B ZNF384 ZNF2 RAD21 HBP1 TEAD3 CTBP1 HINT3 NCOA7-AS1 RN7SKP56
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around NCOA7-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for NCOA7-AS1 Gene

Chromosome:
6
Start:
125,797,856 bp from pter
End:
125,818,858 bp from pter
Size:
21,003 bases
Orientation:
Minus strand

Genomic View for NCOA7-AS1 Gene

Genes around NCOA7-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NCOA7-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NCOA7-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NCOA7-AS1 Gene

Proteins for NCOA7-AS1 Gene

Post-translational modifications for NCOA7-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NCOA7-AS1 Gene

Domains & Families for NCOA7-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NCOA7-AS1 Gene

Function for NCOA7-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NCOA7-AS1 Gene

Localization for NCOA7-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NCOA7-AS1 Gene

Pathways & Interactions for NCOA7-AS1 Gene

SuperPathways for NCOA7-AS1 Gene

No Data Available

Interacting Proteins for NCOA7-AS1 Gene

Gene Ontology (GO) - Biological Process for NCOA7-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NCOA7-AS1 Gene

Transcripts for NCOA7-AS1 Gene

mRNA/cDNA for NCOA7-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NCOA7-AS1 Gene

No ASD Table

Relevant External Links for NCOA7-AS1 Gene

GeneLoc Exon Structure for
NCOA7-AS1
ECgene alternative splicing isoforms for
NCOA7-AS1

Expression for NCOA7-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NCOA7-AS1 Gene

genes like me logo Genes that share expression patterns with NCOA7-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for NCOA7-AS1 Gene

Orthologs for NCOA7-AS1 Gene

Evolution for NCOA7-AS1 Gene

ENSEMBL:
Gene Tree for NCOA7-AS1 (if available)
TreeFam:
Gene Tree for NCOA7-AS1 (if available)

No data available for Orthologs for NCOA7-AS1 Gene

Paralogs for NCOA7-AS1 Gene

No data available for Paralogs for NCOA7-AS1 Gene

Variants for NCOA7-AS1 Gene

Sequence variations from dbSNP and Humsavar for NCOA7-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs10457470 -- 125,799,844(+) AAATC(A/G)GATGT intron-variant
rs10485125 -- 125,815,296(-) GAGTC(A/G)TAACC intron-variant, nc-transcript-variant, utr-variant-5-prime
rs10650792 -- 125,813,925(+) GTATT(-/TTT)CCTGA intron-variant
rs111297330 -- 125,813,057(+) CGTCA(A/G)TCCTC intron-variant
rs111525027 -- 125,798,615(+) GATGT(G/T)TATAA intron-variant

Relevant External Links for NCOA7-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NCOA7-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NCOA7-AS1 Gene

Disorders for NCOA7-AS1 Gene

Relevant External Links for NCOA7-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NCOA7-AS1

No disorders were found for NCOA7-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NCOA7-AS1 Gene

Publications for NCOA7-AS1 Gene

  1. Analysis of long non-coding RNA expression profiles in gastric cancer. (PMID: 23801869) Cao W.J. … Zhang Z.Y. (World J. Gastroenterol. 2013) 2 3 64

Products for NCOA7-AS1 Gene

Sources for NCOA7-AS1 Gene

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