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Aliases & Descriptions for NCKIPSD gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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User Feedback Aliases & Descriptions NCK interacting protein with SH3 domain1 2 DIP-12 3 AF3P211 2 3 5 54 kDa VacA-interacting protein2 3 SPIN901 2 3 5 SH3 adapter protein SPIN902 3 WISH1 2 NCK-interacting protein with SH3 domain2 DIP11 2 DIP2 ORF11 2 diaphanous protein interacting protein2 WASLBP1 2 MGC238912 Dia-interacting protein 12 3 SH3 protein interacting with Nck, 90 kDa2 Diaphanous protein-interacting protein2 3 dia interacting protein2 VIP542 3 AF3p213 90 kDa SH3 protein interacting with Nck2 3
Search outside databases for aliases for NCKIPSD genePrevious GC identifer: GC03M048661
Summaries for NCKIPSD gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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User Feedback Entrez Gene summary for NCKIPSD : The protein encoded by this gene is localized exclusively in the cell nucleus. It plays a role in signal transduction, and may function in the maintenance of sarcomeres and in the assembly of myofibrils into sarcomeres. It also plays an important role in stress fiber formation. The gene is involved in therapy-related leukemia by a chromosomal translocation t(3;11)(p21;q23) that involves this gene and the myeloid/lymphoid leukemia gene. Alternative splicing occurs in this locus and two transcript variants encoding distinct isoforms have been identified. (provided by RefSeq) UniProtKB/Swiss-Prot: SPN90_HUMAN, Q9NZQ3 Function : Has an important role in stress fiber formation induced by active diaphanous protein homolog 1 (DRF1).Induces microspike formation, in vivo (By similarity). In vitro, stimulates N-WASP-induced ARP2/3 complex activation in the absence of CDC42 (By similarity). May play an important role in the maintenance of sarcomeres and/or in the assembly of myofibrils into sarcomeres. Implicated in regulation of actin polymerization and cell adhesion Gene Wiki entry for NCKIPSD
Genomic Views for NCKIPSD gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
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Ensembl (release 56) ,
Regulatory elements and Epigenetics data according to
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User Feedback Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the NCKIPSD gene upstream (promoter) region :AP-1 c-Fos c-Jun Pax-2 Meis-1 HOXA9B Pax-6 ZID GR-beta GR-alpha Epigenetics: SABiosciences Methyl-Profiler DNA Methylation qPCR Primer Assays for NCKIPSD: MePH04901-1A Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 3p21 Ensembl cytogenetic band: 3p21.31 HGNC cytogenetic band: 3p21 NCKIPSD Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 3 GeneLoc Exon Structure
GeneLoc location for GC03M048675: view genomic region
(about GC identifiers )
Start:
48,701,364 bp from pter
End:
48,723,797 bp from pter
Size:
22,434 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000003.11 NT_022517.18 Proteins for NCKIPSD gene
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene ,
Novus Biologicals , and/or
Sino Biological ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 May 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abnova ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
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User Feedback UniProtKB/Swiss-Prot: SPN90_HUMAN, Q9NZQ3 (See
protein sequence )Recommended Name: NCK-interacting protein with SH3 domain Size : 722 amino acids; 78960 Da
Subunit : Associates with the intermediate filaments, vimentin and desmin. Binds the first and third SH3 domains of NCK.Binds the proline-rich domains of N-WASP through its SH3 domain (By similarity). Similarly, binds diaphanous protein homolog 1 (DRF1). Binds the SH3 domains of GRB2 through its proline-rich domains
Subcellular location : Nucleus. Note=Colocalizes with DRF1 at membrane ruffles, and with Nck at Z-disks in maturecardiac myocytes
Secondary accessions : Q9UGM8Alternative splicing : 2 isoforms : Q9NZQ3-1 Q9NZQ3-2 Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_057537.1 NP_909119.1 ENSEMBL proteins: ENSP00000342621 ENSP00000416904 ENSP00000408588 ENSP00000416144 ENSP00000406442 ENSP00000396683 ENSP00000409675 ENSP00000294129 ENSP00000389059 Human Recombinant Proteins 2 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
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NCKIPSD for ontologies About GeneDecksing Antibodies for NCKIPSD: Assays for NCKIPSD:
Protein
Domains/ Families for NCKIPSD gene(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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NCKIPSD for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q9NZQ3 ProtoNet protein and cluster: Q9NZQ3
1 Blocks protein family : IPB001452 SH3 domain signature UniProtKB/Swiss-Prot: SPN90_HUMAN, Q9NZQ3 Similarity : Contains 1 SH3 domain
Gene Function for NCKIPSD gene
(According to MGI May 08 2010, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Millipore ,
Abnova ,
siRNAs from
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Sigma-Aldrich ,
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Sino Biological ,
Ontologies according to Gene Ontology Consortium 01 May 2010 via
Entrez Gene .)
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User Feedback UniProtKB/Swiss-Prot: SPN90_HUMAN, Q9NZQ3 Function : Has an important role in stress fiber formation induced by active diaphanous protein homolog 1 (DRF1).Induces microspike formation, in vivo (By similarity). In vitro, stimulates N-WASP-induced ARP2/3 complex activation in the absence of CDC42 (By similarity). May play an important role in the maintenance of sarcomeres and/or in the assembly of myofibrils into sarcomeres. Implicated in regulation of actin polymerization and cell adhesion
3 Gene Ontology (GO) molecular function terms (GO ID links to tree view) :
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NCKIPSD for ontologies About GeneDecksing Animal Models: 5 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Nckipsd) :
NCKIPSD for phenotypes About GeneDecksing Pathways & Interactions for NCKIPSD gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
Applied Biosystems GeneAssist ,
KEGG
and/or UniProtKB ,
(map by GeneGo ),
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 May 2010 via
Entrez Gene) .
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User Feedback SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for NCKIPSD 5/15 Interacting proteins for NCKIPSD (Q9NZQ3 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 15
) About this table 3 Gene Ontology (GO) biological process terms (GO ID links to tree view) :
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NCKIPSD for ontologies About GeneDecksing
Drugs & Compounds for NCKIPSD gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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NCKIPSD for compounds About GeneDecksing Browse Tocris compounds for NCKIPSD 3 Novoseek chemical compound relationships for NCKIPSD gene
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Transcripts for NCKIPSD gene(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 223 Homo sapiens; Apr 2 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
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User Feedback Assays: Applied Biosystems TaqMan® Gene Expression Assays: NM_016453 NM_184231 Clones: Origene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NCKIPSD Origene Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NCKIPSD Origene untagged cDNA clones in CMV expression vector (see all 2 ): NCKIPSD
Primers: Origene genome-wide validated SYBR primer pairs: NCKIPSD SABiosciences RT2 qPCR Primer Assay for NCKIPSD: PPH10887A
REFSEQ mRNAs for NCKIPSD gene (2 alternative transcripts): NM_016453.2 NM_184231.1
Additional cDNA sequence: AF178432.1 AF303581.1 AJ242655.2 AK294151.1 AL049430.1 AY453794.1 BC006255.2 BC016052.1 BC026280.1 CR609217.1 CR624793.1
9 DOTS entries : DT.442329 DT.100781728 DT.305127 DT.40271098 DT.97846133 DT.100781726 DT.99950774 DT.95075914
DT.92430019 1 AceView cDNA sequence :
BF894800
highest scoring ESTs for NCKIPSD :BC006255 BC016052 AA322751 AF178432 AF303581 AI245778 AI420887 AI827711 AJ242655 AL042685 Unigene Cluster for NCKIPSD:
NCK interacting protein with SH3 domain Hs.655006 [show with all ESTs ] Unigene Representative Sequence: AJ242655 GeneLoc Exon Structure 10 Ensembl transcripts including schematic representations : ENST00000341520
ENST00000426678
ENST00000453349
ENST00000454134
ENST00000415281
ENST00000413374
ENST00000439518
ENST00000470006
ENST00000294129
ENST00000416649
Expression for NCKIPSD gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 223 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems ,
Primers from
OriGene and/or
SABiosciences
)
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User Feedback NCKIPSD expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for NCKIPSD 1 / 2 / 3
6 probe-sets matching NCKIPSD gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
56174_at2 , 3
U95-B
1
0.81
1.00
0.91
1.07
AL042685
0.60
1.00
0.82
1
60710_at2 , 3
U95-C
1
0.44
1.00
-0.03
0.93
AI245778
0.60
1.00
0.82
1
218697_at2 , 3
U133-A
1
1.00
1.00
--
--
NM_016453
0.60
1.00
0.82
1
233165_at2 , 3
U133-B
1
0.36
1.00
--
--
AJ242655
0.60
1.00
0.82
1
218697_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
233165_at2
U133Plus2
1
0.36
1.00
--
--
--
--
--
--
--
About this table
NCKIPSD for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TGTATTTTCC SOURCE GeneReport for Unigene cluster: Hs.655006 Expression variation in blood from EXPOLDB for NCKIPSD
UniProtKB/Swiss-Prot: SPN90_HUMAN, Q9NZQ3 Tissue specificity : Highest expression in heart, brain, skeletal muscle, kidney and liver. Lower levels in placenta,lung, small intestine and leukocytes. Weak expression in colon, thymus and spleen
Primers: Origene genome-wide validated SYBR primer pairs: NCKIPSD SABiosciences RT2 qPCR Primer Assay for NCKIPSD: PPH10887A
Orthologs for NCKIPSD gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI May 08 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for NCKIPSD gene from 5/7 species (see all 7
)
About this table Species with no ortholog for NCKIPSD ENSEMBL Gene Tree for NCKIPSD Paralogs for NCKIPSD gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Genomic Variants for NCKIPSD gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for NCKIPSD (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 1 variation for NCKIPSD 1 CNV : 9448
Disorders & Mutations for NCKIPSD gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
BCGD,
and/or TGDB .)
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NCKIPSD for disorders About GeneDecksing
OMIM: 606671 UniProtKB/Swiss-Prot: SPN90_HUMAN, Q9NZQ3
A chromosomal aberration involving NCKIPSD/AF3p21 is found in therapy-related leukemia. Translocation t(3;11)(p21;q23) with MLL
2 Novoseek disease relationships for NCKIPSD gene
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Medical News for NCKIPSD gene (Possibly Related Articles in
Doctor's Guide )
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Publications for NCKIPSD gene (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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User Feedback 10/22 PubMed articles for NCKIPSD gene (see all 22
): Novel SH3 protein encoded by the AF3p21 gene is fused to the mixed lineage leukemia protein in a therapy-related leukemia with t(3;11)(p21;q23). (PubMed id 10648423) 1, 2, 3 , 4 Sano K.... Nakamura H. (2000) The VacA toxin of Helicobacter pylori identifies a new intermediate filament-interacting protein. (PubMed id 10619843) 1, 2, 3 , 4 de Bernard M....Montecucco C. (2000) Genomic organization, tissue expression and cellular localization of AF3p21, a fusion partner of MLL in therapy-related leukemia. (PubMed id 11241789) 1, 3 , 4 Hayakawa A.... Sano K. (2001) SPIN90 (SH3 protein interacting with Nck, 90 kDa), an adapter protein that is developmentally regulated during cardiac myocyte differentiation. (PubMed id 11278500) 3 , 4 Lim C.S.... Song W.K. (2001) mDia-interacting protein acts downstream of rho-mDia and modifies src activation and stress fiber formation. (PubMed id 11509578) 3 , 4 Satoh S. and Tominaga T. (2001) Dia-interacting protein modulates formin-mediated actin assembly at the cell cortex. (PubMed id 17398099) 1, 3 Eisenmann K.M....Alberts A.S. (2007) Regulation of SPIN90 phosphorylation and interaction with Nck by ERK and cell adhesion. (PubMed id 14559906) 1, 3 Lim C.S....Song W.K. (2003) Palladin interacts with SH3 domains of SPIN90 and Src and is required for Src-induced cytoskeletal remodeling. (PubMed id 17537434) 1, 3 Ronty M....Carpen O. (2007) SPIN90-IRSp53 complex participates in Rac-induced mem brane ruffling. (PubMed id 19460367) 1, 3 Teodorof C....Song W.K. (year=2009;month=Aug;day=15) Phosphoproteome of resting human platelets. (PubMed id 18088087) 4 Zahedi R.P.... Sickmann A. (2008)
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Genome Databases showing NCKIPSD gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
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Other Databases showing NCKIPSD gene
(According to HUGE )
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Specialized Databases showing NCKIPSD gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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User Feedback Patent Information for NCKIPSD gene: Search GeneIP for patents involving NCKIPSD GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search Services for NCKIPSD gene (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Novus Biologicals ,Epitomics , Sigma-Aldrich , R&D Systems , SABiosciences , Millipore , Abnova , Clones available from OriGene , Sigma-Aldrich , Sino Biological , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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