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Aliases for NCKAP5-IT1 Gene

Subcategory (RNA class) for NCKAP5-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NCKAP5-IT1 Gene

  • NCKAP5 Intronic Transcript 1 2 3 5
  • NCKAP5 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for NCKAP5-IT1 Gene

Previous GeneCards Identifiers for NCKAP5-IT1 Gene

  • GC00U933176
  • GC02M134190

Summaries for NCKAP5-IT1 Gene

GeneCards Summary for NCKAP5-IT1 Gene

NCKAP5-IT1 (NCKAP5 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NCKAP5-IT1 Gene

Genomics for NCKAP5-IT1 Gene

Regulatory Elements for NCKAP5-IT1 Gene

Enhancers for NCKAP5-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G133433 1.2 FANTOM5 ENCODE 0.7 -0.8 -779 2.8 PKNOX1 NFIB INSM2 FEZF1 RAD21 BRCA1 RFX5 ZNF366 ZSCAN5C FOS NCKAP5 NCKAP5-IT1 GC02P133505
GH02G133430 0.7 ENCODE 0.7 +2.5 2474 1.2 RFX1 HLF CEBPB CEBPG ZNF384 MNT NFIL3 ZNF692 FOS CUX1 NCKAP5-IT1 RN7SKP154
GH02G133420 1 Ensembl ENCODE 0.4 +12.4 12421 1.6 CTCF TBP PKNOX1 KLF1 SUZ12 SIN3A CEBPG RAD21 CTBP1 GATA3 NCKAP5-IT1 RN7SKP154
GH02G133504 1.3 Ensembl ENCODE dbSUPER 0.2 -71.2 -71223 1.4 ESRRA NFIB ZBTB7B CTBP1 ZNF316 GATA3 EED FOSL2 FOS IKZF2 NCKAP5 GC02P133505 NCKAP5-IT1
GH02G133476 0.7 ENCODE 0.3 -43.7 -43710 1.5 GATAD2A SOX5 SOX13 FOXA2 CEBPG ZNF316 MAFF ZSCAN16 CEBPA TCF7 GC02P133505 NCKAP5-IT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NCKAP5-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for NCKAP5-IT1 Gene

Chromosome:
2
Start:
133,431,666 bp from pter
End:
133,433,897 bp from pter
Size:
2,232 bases
Orientation:
Minus strand

Genomic View for NCKAP5-IT1 Gene

Genes around NCKAP5-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NCKAP5-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NCKAP5-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for NCKAP5-IT1 Gene

Proteins for NCKAP5-IT1 Gene

Post-translational modifications for NCKAP5-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NCKAP5-IT1 Gene

Domains & Families for NCKAP5-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NCKAP5-IT1 Gene

Function for NCKAP5-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NCKAP5-IT1 Gene

Localization for NCKAP5-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NCKAP5-IT1 Gene

Pathways & Interactions for NCKAP5-IT1 Gene

SuperPathways for NCKAP5-IT1 Gene

No Data Available

Interacting Proteins for NCKAP5-IT1 Gene

Gene Ontology (GO) - Biological Process for NCKAP5-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NCKAP5-IT1 Gene

Drugs & Compounds for NCKAP5-IT1 Gene

No Compound Related Data Available

Transcripts for NCKAP5-IT1 Gene

mRNA/cDNA for NCKAP5-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NCKAP5-IT1 Gene

No ASD Table

Relevant External Links for NCKAP5-IT1 Gene

GeneLoc Exon Structure for
NCKAP5-IT1
ECgene alternative splicing isoforms for
NCKAP5-IT1

Expression for NCKAP5-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NCKAP5-IT1 Gene

genes like me logo Genes that share expression patterns with NCKAP5-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NCKAP5-IT1 Gene

Orthologs for NCKAP5-IT1 Gene

Evolution for NCKAP5-IT1 Gene

ENSEMBL:
Gene Tree for NCKAP5-IT1 (if available)
TreeFam:
Gene Tree for NCKAP5-IT1 (if available)

No data available for Orthologs for NCKAP5-IT1 Gene

Paralogs for NCKAP5-IT1 Gene

No data available for Paralogs for NCKAP5-IT1 Gene

Variants for NCKAP5-IT1 Gene

Relevant External Links for NCKAP5-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NCKAP5-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NCKAP5-IT1 Gene

Disorders for NCKAP5-IT1 Gene

No disorders were found for NCKAP5-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for NCKAP5-IT1 Gene

Publications for NCKAP5-IT1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for NCKAP5-IT1 Gene

Sources for NCKAP5-IT1 Gene

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