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Aliases for NCK1-AS1 Gene

Subcategory (RNA class) for NCK1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NCK1-AS1 Gene

  • NCK1 Antisense RNA 1 (Head To Head) 2 3 5
  • SLC35G2 Antisense RNA 1 2 3
  • SLC35G2-AS1 3

External Ids for NCK1-AS1 Gene

Previous GeneCards Identifiers for NCK1-AS1 Gene

  • GC03M136562

Summaries for NCK1-AS1 Gene

GeneCards Summary for NCK1-AS1 Gene

NCK1-AS1 (NCK1 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for NCK1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NCK1-AS1 Gene

Genomics for NCK1-AS1 Gene

GeneHancer (GH) Regulatory Elements for NCK1-AS1 Gene

Promoters and enhancers for NCK1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I136860 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 554.8 -0.1 -78 3.3 HDGF PKNOX1 SMAD1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 SLC30A9 NCK1 NCK1-AS1 STAG1 IL20RB MSL2 SLC35G2 ENSG00000273486 ENSG00000242968
GH03I136892 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE 16.9 -31.6 -31627 3.1 GATA3 FOXA2 POLR2A JUN CEBPB CBFA2T3 FOS NCK1 IL20RB NCK1-AS1 ENSG00000273486 RAD51AP1P1 GC03P136873
GH03I136817 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 9.5 +42.9 42877 2.8 PKNOX1 ATF1 ZFP64 ARID4B SIN3A DMAP1 ZNF48 GLIS2 ZNF143 FOS SLC35G2 ENSG00000273486 NCK1-AS1
GH03I136929 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE 9 -68.5 -68504 1.9 ZNF664 MAX USF2 CEBPB NCK1 ENSG00000273486 NCK1-AS1 IL20RB RAD51AP1P1 GC03P136873
GH03I136883 Enhancer 0.9 Ensembl ENCODE dbSUPER 13.2 -23.1 -23118 3 SRF POLR2A ELF1 RUNX3 NCK1 NCK1-AS1 ENSG00000273486 SLC35G2 ENSG00000242968 IL20RB RNU6-789P STAG1 GC03P136873 RAD51AP1P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around NCK1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NCK1-AS1 Gene

Genomic Locations for NCK1-AS1 Gene
chr3:136,841,726-136,862,063
(GRCh38/hg38)
Size:
20,338 bases
Orientation:
Minus strand
chr3:136,560,568-136,580,896
(GRCh37/hg19)

Genomic View for NCK1-AS1 Gene

Genes around NCK1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NCK1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NCK1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NCK1-AS1 Gene

Proteins for NCK1-AS1 Gene

Post-translational modifications for NCK1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NCK1-AS1 Gene

Domains & Families for NCK1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NCK1-AS1 Gene

Function for NCK1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NCK1-AS1 Gene

Localization for NCK1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NCK1-AS1 Gene

Pathways & Interactions for NCK1-AS1 Gene

SuperPathways for NCK1-AS1 Gene

No Data Available

Interacting Proteins for NCK1-AS1 Gene

Gene Ontology (GO) - Biological Process for NCK1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NCK1-AS1 Gene

Drugs & Compounds for NCK1-AS1 Gene

No Compound Related Data Available

Transcripts for NCK1-AS1 Gene

mRNA/cDNA for NCK1-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NCK1-AS1 Gene

No ASD Table

Relevant External Links for NCK1-AS1 Gene

GeneLoc Exon Structure for
NCK1-AS1
ECgene alternative splicing isoforms for
NCK1-AS1

Expression for NCK1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NCK1-AS1 Gene

genes like me logo Genes that share expression patterns with NCK1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NCK1-AS1 Gene

Orthologs for NCK1-AS1 Gene

Evolution for NCK1-AS1 Gene

ENSEMBL:
Gene Tree for NCK1-AS1 (if available)
TreeFam:
Gene Tree for NCK1-AS1 (if available)

No data available for Orthologs for NCK1-AS1 Gene

Paralogs for NCK1-AS1 Gene

No data available for Paralogs for NCK1-AS1 Gene

Variants for NCK1-AS1 Gene

Sequence variations from dbSNP and Humsavar for NCK1-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000002543 -- 136,844,135(-) T/C intron_variant
rs1000146391 -- 136,850,694(-) A/G intron_variant
rs1000273820 -- 136,858,073(-) T/A intron_variant
rs1000497115 -- 136,856,703(-) G/A intron_variant
rs1000580493 -- 136,850,384(-) G/A intron_variant

Additional Variant Information for NCK1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NCK1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NCK1-AS1 Gene

Disorders for NCK1-AS1 Gene

Additional Disease Information for NCK1-AS1

No disorders were found for NCK1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NCK1-AS1 Gene

Publications for NCK1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for NCK1-AS1 Gene

Sources for NCK1-AS1 Gene

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