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Aliases for NCK1-AS1 Gene

Subcategory (RNA class) for NCK1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NCK1-AS1 Gene

  • NCK1 Antisense RNA 1 (Head To Head) 2 3 5
  • SLC35G2 Antisense RNA 1 2 3
  • SLC35G2-AS1 3

External Ids for NCK1-AS1 Gene

Previous GeneCards Identifiers for NCK1-AS1 Gene

  • GC03M136562

Summaries for NCK1-AS1 Gene

GeneCards Summary for NCK1-AS1 Gene

NCK1-AS1 (NCK1 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for NCK1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NCK1-AS1 Gene

Genomics for NCK1-AS1 Gene

Regulatory Elements for NCK1-AS1 Gene

Enhancers for NCK1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H136892 0.8 Ensembl ENCODE 16.9 -31.6 -31628 3 GATA3 FOXA2 POLR2A JUN CEBPB FOS IL20RB NCK1-AS1 ENSG00000273486 NCK1 RAD51AP1P1 GC03P136873
GH03H136883 1 Ensembl ENCODE dbSUPER 13.2 -23.1 -23118 3 POLR2A ELF1 RUNX3 NCK1 NCK1-AS1 ENSG00000273486 SLC35G2 ENSG00000242968 IL20RB RNU6-789P STAG1 GC03P136873 RAD51AP1P1
GH03H136931 1.1 Ensembl ENCODE dbSUPER 9.3 -70.5 -70519 1 ZNF217 IKZF1 EBF1 ZNF24 IKZF2 RELA IL20RB ENSG00000273486 NCK1-AS1 RAD51AP1P1
GH03H136817 1 ENCODE 9.5 +42.9 42878 2 PKNOX1 ATF1 ZFP64 ARID4B SIN3A DMAP1 GLIS2 FOS SP3 MXD4 ENSG00000273486 NCK1-AS1 SLC35G2
GH03H136837 1.2 Ensembl ENCODE 7.2 +22.8 22831 2 HDAC1 PKNOX1 ATF1 TBL1XR1 ARNT ZBTB40 TCF12 EGR1 ZNF366 FOS ENSG00000273486 ENSG00000261758 SLC35G2 ENSG00000242968 STAG1 NCK1-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NCK1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for NCK1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000158926 -237 2601 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 SLC30A9 ZNF143

Genomic Location for NCK1-AS1 Gene

Chromosome:
3
Start:
136,841,726 bp from pter
End:
136,862,063 bp from pter
Size:
20,338 bases
Orientation:
Minus strand

Genomic View for NCK1-AS1 Gene

Genes around NCK1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NCK1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NCK1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NCK1-AS1 Gene

Proteins for NCK1-AS1 Gene

Post-translational modifications for NCK1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NCK1-AS1 Gene

Domains & Families for NCK1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NCK1-AS1 Gene

Function for NCK1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NCK1-AS1 Gene

Localization for NCK1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NCK1-AS1 Gene

Pathways & Interactions for NCK1-AS1 Gene

SuperPathways for NCK1-AS1 Gene

No Data Available

Interacting Proteins for NCK1-AS1 Gene

Gene Ontology (GO) - Biological Process for NCK1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NCK1-AS1 Gene

Drugs & Compounds for NCK1-AS1 Gene

No Compound Related Data Available

Transcripts for NCK1-AS1 Gene

mRNA/cDNA for NCK1-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NCK1-AS1 Gene

No ASD Table

Relevant External Links for NCK1-AS1 Gene

GeneLoc Exon Structure for
NCK1-AS1
ECgene alternative splicing isoforms for
NCK1-AS1

Expression for NCK1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NCK1-AS1 Gene

genes like me logo Genes that share expression patterns with NCK1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NCK1-AS1 Gene

Orthologs for NCK1-AS1 Gene

Evolution for NCK1-AS1 Gene

ENSEMBL:
Gene Tree for NCK1-AS1 (if available)
TreeFam:
Gene Tree for NCK1-AS1 (if available)

No data available for Orthologs for NCK1-AS1 Gene

Paralogs for NCK1-AS1 Gene

No data available for Paralogs for NCK1-AS1 Gene

Variants for NCK1-AS1 Gene

Sequence variations from dbSNP and Humsavar for NCK1-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000002543 -- 136,844,135(+) TGCAG(C/T)GAGCC intron-variant
rs1000146391 -- 136,850,694(+) GAATT(A/G)AAAAA intron-variant, upstream-variant-2KB
rs1000273820 -- 136,858,073(+) TAACC(A/T)GGCCA intron-variant
rs1000497115 -- 136,856,703(+) TCTCT(A/G)TAATG intron-variant
rs1000580493 -- 136,850,384(+) TGGGA(A/G)GAGTT intron-variant, upstream-variant-2KB

Relevant External Links for NCK1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NCK1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NCK1-AS1 Gene

Disorders for NCK1-AS1 Gene

Relevant External Links for NCK1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NCK1-AS1

No disorders were found for NCK1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NCK1-AS1 Gene

Publications for NCK1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60

Products for NCK1-AS1 Gene

Sources for NCK1-AS1 Gene

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