 |
 | Services
| |
 |
Aliases & Descriptions for NCK1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| MGC12668 2 | | NCK 2, 3 | | NCKalpha 1, 2 | | Nck-1 3 |
| | | Descriptions |
|---|
| NCK adaptor protein 1 2, 3 | | NCK tyrosine kinase 2 | | SH2/SH3 adaptor protein NCK-alpha 2, 3 | | melanoma NCK protein 2 | | non-catalytic region of tyrosine kinase 2 |
|
| | Search outside databases for aliases for NCK1 genePrevious GC identifers: GC03P133543 GC03P137332 GC03P137862 GC03P137901 |
Summaries for NCK1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for NCK1: The protein encoded by this gene is one of the signaling and transforming proteins containing Src homology 2 and 3 (SH2 and SH3) domains. It is located in the cytoplasm and is an adaptor protein involved in transducing signals from receptor tyrosine kinases to downstream signal recipients such as RAS. [provided by RefSeq] UniProtKB/Swiss-Prot: NCK1_HUMAN, P16333Function: Adapter protein which associates with tyrosine-phosphorylated growth factor receptors or their cellular substrates. Maintains low levels of EIF2S1 phosphorylation by promoting its dephosphorylation by PP1Gene Wiki entry for NCK1 |
Genomic Location for NCK1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the NCK1 gene 
Entrez Gene cytogenetic band: 3q21 Ensembl cytogenetic band: 3q22.3 HGNC cytogenetic band: 3q21NCK1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 3 GeneLoc Exon Structure GeneLoc location for GC03P138063:
(about GC identifiers)
Start:
|
138,063,763 bp from pter |
End:
|
138,150,658 bp from pter |
Size:
|
86,896 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000003.10 NT_005612.15
| Proteins for NCK1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: NCK1_HUMAN, P16333 (See
protein sequence)Recommended Name: Cytoplasmic protein NCK1 Size: 377 amino acids; 42864 Da
Subunit: Associates with BLNK, PLCG1, VAV1 and NCK1 in a B-cell antigen receptor-dependent fashion. Interacts with SOCS7. Part of a complex containing PPP1R15B, PP1 and NCK1. Interacts with RALGPS1
Subcellular location: Cytoplasm. Endoplasmic reticulum
PDB structures from and Proteopedia :2CI8 (3D)
 2CI9 (3D)
 2CUB (3D)
 2JS0 (3D)
 2JS2 (3D)
 2JW4 (3D)
 Post-translational modifications:
Phosphorylated on Ser and Tyr residues1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_006144.1
ENSEMBL proteins: ENSP00000288986
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for NCK1: Assays for NCK1: | Protein
Domains/ Families for NCK1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P16333
ProtoNet protein and cluster: P16333 2 Blocks protein families: IPB000980 SH2 domain signature IPB001452 SH3 domain signature
UniProtKB/Swiss-Prot: NCK1_HUMAN, P16333Similarity: Contains 1 SH2 domainSimilarity: Contains 3 SH3 domains | Gene Function for NCK1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_006153
Applied Biosystems Silencer® siRNAs for NCK1
Sigma-Aldrich siRNA for NCK1  Sigma-Aldrich shRNA Panels and shRNA for NCK1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_006153                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_006153                                  untagged cDNA clones in CMV expression vector (see all 2): NM_006153 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_006153
UniProtKB/Swiss-Prot: NCK1_HUMAN, P16333Function: Adapter protein which associates with tyrosine-phosphorylated growth factor receptors or their cellular substrates. Maintains low levels of EIF2S1 phosphorylation by promoting its dephosphorylation by PP1Genatlas biochemistry entry for NCK1:transduction adaptor protein 110 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Nck1):
4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for NCK1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/6 Sigma-Aldrich "Your Favorite Gene" Pathways for NCK1 (Your Favorite Gene powered by Ingenuity) (see all 6
) 
Gene Network CentralTM Interacting Genes and Proteins Network for NCK1 
5/274 Interacting proteins for NCK1 (P163331, 2 ENSP000002889863) via UniProtKB, MINT, and/or STRING (see all 274
)About this table
5/8 Gene Ontology (GO) biological process terms (links to tree view) (see all 8
): About this table
|
Drugs & Compounds for NCK1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for NCK1 9 Novoseek chemical compound relationships for NCK1 gene
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| tyrosine |
72.43 |
79 |
1448108 (4), 1333047 (3), 10229072 (3), 1280326 (3) (see all 46) |
| phosphotyrosine |
65.67 |
8 |
9362449 (3), 15132304 (2), 8265614 (1) |
| phosphatidylinositol |
41.26 |
7 |
8890167 (1), 7692230 (1), 9837978 (1), 10523848 (1) (see all 7) |
| threonine |
37.19 |
8 |
1333047 (2), 9135144 (1), 1280326 (1), 7706279 (1) (see all 5) |
| pip2 |
36.69 |
1 |
12147689 (1) |
| proline |
28.84 |
2 |
10671570 (1) |
| phosphoinositide |
28.39 |
4 |
8894489 (1), 9531977 (1) |
| vanadate |
20.02 |
2 |
8895336 (2) |
| phenylalanine |
14.40 |
2 |
10202139 (1), 11551902 (1) |
About this table
|
Transcripts for NCK1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_006153
Sigma-Aldrich siRNA for NCK1  Sigma-Aldrich shRNA Panels and shRNA for NCK1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_006153 REFSEQ mRNAs for NCK1 gene: NM_006153.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_006153               OriGene GFP tagged cDNA clone in CMV expression vector: NM_006153                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_006153                                  untagged cDNA clones in CMV expression vector (see all 2): NM_006153  Additional cDNA sequence: AK301460.1 AK312692.1 BC006403.2 X17576.1 8 DOTS entries: DT.413499 DT.95265172 DT.91707118 DT.100022098 DT.120842121 DT.91694270 DT.101976672 DT.120842106 24/87 AceView cDNA sequences (see all 87
):BC006403 NM_006153 AA278763 AI754384 AA746252 BF445782 AL597174 BM975093 BF032608 CB132726 AI360552 AA724030 BM981906 BQ002749 AU107243 BG402926 CB070168 BQ428732 BF686176 BF671694 BI598035 D58896 AI935447 CF994948
highest scoring ESTs for NCK1:X17576 AA151454 AA151455 AA278763 AA278867 AA280548 AA724030 AA746252 AI003628 AI075925 Unigene Cluster for NCK1: NCK adaptor protein 1 Hs.477693 [show with all ESTs]Unigene Representative Sequence: NM_006153
GeneLoc Exon Structure
5/8 Alternative Splicing Database (ASD) splice patterns (SP) for NCK1 (see all 8
)
| ExUns: | 1a | · | 1b | · | 1c | · | 1d | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | · | 5c | ^ | 6 | ^ | 7a | · | 7b | · | 7c | · | 7d | · | 7e | ^ | 8a | · | 8b | · | 8c | ^ | 9 | |
| SP1: | |   | |   | |   | - |   | - |   | - |   | - |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | - |   | |   | - |   | - |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | - |   | |   | - |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | - |   | - |   | - |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for NCK1
1 Ensembl transcript including schematic representation: ENST00000288986
|
Expression for NCK1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| NCK1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for NCK1
1 / 2 / 3 6 probe-sets matching NCK1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TTGTACAATT
SOURCE GeneReport for Unigene cluster: Hs.477693
Expression variation in blood from EXPOLDB for NCK1 |
Orthologs for NCK1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for NCK1 gene from 5/10 species (see all 10
)
About this table Species with no ortholog for NCK1
ENSEMBL Gene Tree for NCK1 | Paralogs for NCK1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for NCK1 gene
- GRAP2 NCK22
|
SNPs/Variants for NCK1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for NCK1 (up to first 250kb)
|
Disorders & Mutations for NCK1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 600508
4 Novoseek disease relationships for NCK1 gene
About this table
|
Medical News for NCK1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for NCK1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/193 PubMed articles for NCK1 gene (see all 193
):- The SH2/SH3 domain-containing protein Nck is recognized by certain anti-phospholipase C-gamma 1 monoclonal antibodies, and its phosphorylation on tyrosine is stimulated by platelet-derived growth factor and epidermal growth factor treatment. (PubMed id 1448108)1, 3, 4 Meisenhelder J. and Hunter T. (1992)
- Chromosome locations of genes encoding human signal transduction adapter proteins, Nck (NCK), Shc (SHC1), and Grb2 (GRB2). (PubMed id 7806213)1, 2, 3 Huebner K....Cannizzaro L. (1994)
- A novel ligand for an SH3 domain of the adaptor protein Nck bears an SH2 domain and nuclear signaling motifs. (PubMed id 9344857)1, 3, 4 Matuoka K.... Takenawa T. (1997)
- Identification of Nck family genes, chromosomal localization, expression, and signaling specificity. (PubMed id 9737977)1, 2, 3 Chen M....Li W. (1998)
- Identification and characterization of a new family of guanine nucleotide exchange factors for the ras-related GTPase Ral. (PubMed id 10747847)1, 3, 4 Rebhun J.F....Quilliam L.A. (2000)
- Nck in a complex containing the catalytic subunit of protein phosphatase 1 regulates eukaryotic initiation factor 2alpha signaling and cell survival to endoplasmic reticulum stress. (PubMed id 16835242)3, 4 Latreille M. and Larose L. (2006)
- Time-resolved mass spectrometry of tyrosine phosphorylation sites in the epidermal growth factor receptor signaling network reveals dynamic modules. (PubMed id 15951569)3, 4 Zhang Y.... White F.M. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- BLNK: a central linker protein in B cell activation. (PubMed id 9697839)3, 4 Fu C.... Chan A.C. (1998)
- Phosphorylation of Nck in response to a variety of receptors, phorbol myristate acetate, and cyclic AMP. (PubMed id 1333046)3, 4 Park D. and Rhee S.G. (1992)
|
Search for NCK1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing NCK1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing NCK1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing NCK1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for NCK1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for NCK1:

 | |
 | | | | |
|
 |  |  |
| Antibodies & Assays for NCK1  |
| | | | Search Tocris compounds for NCK1 |
|
 |
 | | | |
GeneCards Homepage - Last full update: 1 Jul 2009
Incremental update: 13 Oct 2009
|