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Aliases for NCF4-AS1 Gene

Subcategory (RNA class) for NCF4-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NCF4-AS1 Gene

  • NCF4 Antisense RNA 1 2 3 5

External Ids for NCF4-AS1 Gene

Summaries for NCF4-AS1 Gene

GeneCards Summary for NCF4-AS1 Gene

NCF4-AS1 (NCF4 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NCF4-AS1 Gene

Genomics for NCF4-AS1 Gene

Regulatory Elements for NCF4-AS1 Gene

Enhancers for NCF4-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22G037030 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.8 -163.1 -163122 5.4 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 SLC30A9 TMPRSS6 MPST TEX33 ENSG00000231467 NCF4-AS1 NCF4 IL2RB ENSG00000229971 TST CARD10
GH22G037014 1.6 Ensembl ENCODE dbSUPER 10.8 -150.2 -150233 12.5 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 MPST KCTD17 ANKRD54 ENSG00000231467 TMPRSS6 NCF4-AS1 NCF4 IL2RB ENSG00000229971 TST
GH22G036911 1.5 FANTOM5 ENCODE dbSUPER 11.3 -43.1 -43065 3.5 HDGF ATF1 PKNOX1 WRNIP1 TCF12 GATA2 ELK1 ZNF143 JUNB ZNF592 NCF4 CSF2RB CYTH4 NCF4-AS1 RAC2 LOC105373022
GH22G036920 1.4 Ensembl ENCODE dbSUPER 11.9 -51.4 -51390 3.3 HDGF PKNOX1 ARID4B ZNF2 ZNF143 FOS DEK ZNF263 YY2 JUNB NCF4-AS1 NCF4 ENSG00000229971 MPST LOC105373023 CSF2RB
GH22G036781 1.2 Ensembl ENCODE 11.3 +88.3 88293 1.2 HDGF RB1 NFIB FEZF1 ZNF2 RAD21 YY1 RARA ZNF143 FOS ENSG00000234979 PVALB NCF4 NCF4-AS1 ENSG00000229971 ENSG00000231467 TMPRSS6 IL2RB IFT27 GC22M036788
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NCF4-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for NCF4-AS1 Gene

Chromosome:
22
Start:
36,847,372 bp from pter
End:
36,870,441 bp from pter
Size:
23,070 bases
Orientation:
Minus strand

Genomic View for NCF4-AS1 Gene

Genes around NCF4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NCF4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NCF4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NCF4-AS1 Gene

Proteins for NCF4-AS1 Gene

Post-translational modifications for NCF4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NCF4-AS1 Gene

Domains & Families for NCF4-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NCF4-AS1 Gene

Function for NCF4-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NCF4-AS1 Gene

Localization for NCF4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NCF4-AS1 Gene

Pathways & Interactions for NCF4-AS1 Gene

SuperPathways for NCF4-AS1 Gene

No Data Available

Interacting Proteins for NCF4-AS1 Gene

Gene Ontology (GO) - Biological Process for NCF4-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NCF4-AS1 Gene

Drugs & Compounds for NCF4-AS1 Gene

No Compound Related Data Available

Transcripts for NCF4-AS1 Gene

mRNA/cDNA for NCF4-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NCF4-AS1 Gene

No ASD Table

Relevant External Links for NCF4-AS1 Gene

GeneLoc Exon Structure for
NCF4-AS1
ECgene alternative splicing isoforms for
NCF4-AS1

Expression for NCF4-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NCF4-AS1 Gene

Orthologs for NCF4-AS1 Gene

Evolution for NCF4-AS1 Gene

ENSEMBL:
Gene Tree for NCF4-AS1 (if available)
TreeFam:
Gene Tree for NCF4-AS1 (if available)

No data available for Orthologs for NCF4-AS1 Gene

Paralogs for NCF4-AS1 Gene

No data available for Paralogs for NCF4-AS1 Gene

Variants for NCF4-AS1 Gene

Sequence variations from dbSNP and Humsavar for NCF4-AS1 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs387906808 Pathogenic 36,867,434(+) GATGC(A/C/G/T)GATAC intron-variant, reference, missense
rs869025585 Pathogenic 36,864,953(+) GGATC(-/AAGGAGGATC)CAAGT intron-variant, reference, frameshift-variant, utr-variant-5-prime
rs876657377 Pathogenic 36,864,944(+) GACAA(-/AAGGAGGATC)CAAGT intron-variant, reference, frameshift-variant, utr-variant-5-prime
rs10854695 Likely benign 36,864,081(+) ATCTC(A/G)GCCAA intron-variant, reference, synonymous-codon, utr-variant-5-prime
rs148141762 Likely benign 36,861,077(+) TGAGA(C/T)GAGAC intron-variant, upstream-variant-2KB, utr-variant-5-prime

Relevant External Links for NCF4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NCF4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NCF4-AS1 Gene

Disorders for NCF4-AS1 Gene

No disorders were found for NCF4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for NCF4-AS1 Gene

Publications for NCF4-AS1 Gene

  1. Differential expression profile of long noncoding RNAs in human chorionic villi of early recurrent miscarriage. (PMID: 27836685) Wang L. … Tang L. (Clin. Chim. Acta 2017) 2 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for NCF4-AS1 Gene

Sources for NCF4-AS1 Gene

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