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Aliases for NCF4-AS1 Gene

Subcategory (RNA class) for NCF4-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NCF4-AS1 Gene

  • NCF4 Antisense RNA 1 2 3 5

External Ids for NCF4-AS1 Gene

Summaries for NCF4-AS1 Gene

GeneCards Summary for NCF4-AS1 Gene

NCF4-AS1 (NCF4 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for NCF4-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NCF4-AS1 Gene

Genomics for NCF4-AS1 Gene

GeneHancer (GH) Regulatory Elements for NCF4-AS1 Gene

Promoters and enhancers for NCF4-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22I036871 Enhancer 0.7 ENCODE dbSUPER 550.8 -1.5 -1503 0.2 CTCF JUND USF1 FOSL2 FOS NCF4-AS1 PVALB NCF4 LOC105373022
GH22I036870 Enhancer 0.5 ENCODE 550.8 0.0 -23 0.2 SMARCE1 EGR1 DPF2 FOSL2 FOS NCF4-AS1 NCF4 LOC105373022
GH22I037014 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 10.8 -150.2 -150232 12.5 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B MPST TST RBFOX2 KCTD17 ENSG00000231467 TMPRSS6 NCF4-AS1 NCF4 IL2RB ENSG00000229971
GH22I036911 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.3 -43.1 -43065 3.5 HDGF ZSCAN4 MAX ZMYM3 POLR2A ZNF143 ETV6 ATF7 IKZF2 SMARCA5 CSF2RB NCF4 CYTH4 NCF4-AS1 RAC2 LOC105373022
GH22I036920 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 11.9 -51.4 -51389 3.3 HDGF PKNOX1 ZSCAN4 PAX8 EBF1 BATF IRF4 RELA CTBP1 POLR2A CSF2RB NCF4-AS1 NCF4 ENSG00000229971 MPST LOC105373023
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around NCF4-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NCF4-AS1 Gene

Genomic Locations for NCF4-AS1 Gene
chr22:36,847,372-36,870,441
(GRCh38/hg38)
Size:
23,070 bases
Orientation:
Minus strand
chr22:37,243,415-37,266,483
(GRCh37/hg19)

Genomic View for NCF4-AS1 Gene

Genes around NCF4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NCF4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NCF4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NCF4-AS1 Gene

Proteins for NCF4-AS1 Gene

Post-translational modifications for NCF4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NCF4-AS1 Gene

Domains & Families for NCF4-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NCF4-AS1 Gene

Function for NCF4-AS1 Gene

Phenotypes From GWAS Catalog for NCF4-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NCF4-AS1 Gene

Localization for NCF4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NCF4-AS1 Gene

Pathways & Interactions for NCF4-AS1 Gene

SuperPathways for NCF4-AS1 Gene

No Data Available

Interacting Proteins for NCF4-AS1 Gene

Gene Ontology (GO) - Biological Process for NCF4-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NCF4-AS1 Gene

Drugs & Compounds for NCF4-AS1 Gene

No Compound Related Data Available

Transcripts for NCF4-AS1 Gene

mRNA/cDNA for NCF4-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NCF4-AS1 Gene

No ASD Table

Relevant External Links for NCF4-AS1 Gene

GeneLoc Exon Structure for
NCF4-AS1
ECgene alternative splicing isoforms for
NCF4-AS1

Expression for NCF4-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NCF4-AS1 Gene

Orthologs for NCF4-AS1 Gene

Evolution for NCF4-AS1 Gene

ENSEMBL:
Gene Tree for NCF4-AS1 (if available)
TreeFam:
Gene Tree for NCF4-AS1 (if available)

No data available for Orthologs for NCF4-AS1 Gene

Paralogs for NCF4-AS1 Gene

No data available for Paralogs for NCF4-AS1 Gene

Variants for NCF4-AS1 Gene

Sequence variations from dbSNP and Humsavar for NCF4-AS1 Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs10854695 benign, likely-benign, not specified, Chronic granulomatous disease, Granulomatous disease, chronic, autosomal recessive, cytochrome b-positive, type III 36,864,081(-) G/A/T genic_downstream_transcript_variant, intron_variant
rs148141762 likely-benign, Chronic granulomatous disease 36,861,077(-) C/T genic_downstream_transcript_variant, intron_variant
rs150103256 uncertain-significance, Chronic granulomatous disease 36,871,659(-) G/A/C upstream_transcript_variant
rs200052796 uncertain-significance, Chronic granulomatous disease 36,865,078(-) C/A/T genic_downstream_transcript_variant, intron_variant
rs200865261 uncertain-significance, Chronic granulomatous disease 36,864,039(-) G/A/T genic_downstream_transcript_variant, intron_variant

Additional Variant Information for NCF4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NCF4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NCF4-AS1 Gene

Disorders for NCF4-AS1 Gene

Additional Disease Information for NCF4-AS1

No disorders were found for NCF4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NCF4-AS1 Gene

Publications for NCF4-AS1 Gene

  1. Differential expression profile of long noncoding RNAs in human chorionic villi of early recurrent miscarriage. (PMID: 27836685) Wang L … Tang L (Clinica chimica acta; international journal of clinical chemistry 2017) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for NCF4-AS1 Gene

Sources for NCF4-AS1 Gene

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