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Aliases for NCBP2-AS2 Gene

Subcategory (RNA class) for NCBP2-AS2 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for NCBP2-AS2 Gene

  • NCBP2 Antisense RNA 2 (Head To Head) 2 3 5
  • NCBP2 Antisense Gene Protein 2 4
  • NCBP2 Antisense RNA 2 4

External Ids for NCBP2-AS2 Gene

ORGUL Members for NCBP2-AS2 Gene

Previous GeneCards Identifiers for NCBP2-AS2 Gene

  • GC03P196671

Summaries for NCBP2-AS2 Gene

GeneCards Summary for NCBP2-AS2 Gene

NCBP2-AS2 (NCBP2 Antisense RNA 2 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NCBP2-AS2 Gene

Genomics for NCBP2-AS2 Gene

Regulatory Elements for NCBP2-AS2 Gene

Enhancers for NCBP2-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F196938 0.5 ENCODE 35.7 -0.2 -246 7.3 HDGF CREB3L1 MLX WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 NCBP2-AS2 PIGZ ENSG00000234742 SENP5 NCBP2-AS1 NCBP2 LRCH3
GH03F196866 0.6 ENCODE 29.1 -74.6 -74578 2.5 ATF1 CREB3L1 ARID4B SIN3A ZNF48 BRCA1 ETS1 YY1 GATA2 ELK1 NCBP2-AS2 RPL36P7 NCBP2 NCBP2-AS1 CEP19 ENSG00000234742 SENP5 GC03M196873
GH03F196968 1.4 FANTOM5 ENCODE 6.8 +26.8 26770 2.4 PKNOX1 CREB3L1 SIN3A ZNF48 GLIS2 ZNF143 KLF13 ZNF263 REST SMARCB1 LOC220729 UBXN7-AS1 ENSG00000249626 MELTF-AS1 PIGZ SENP5 NCBP2-AS2 NRROS GC03P196980
GH03F196676 0.5 Ensembl 5.8 -265.0 -265023 1.6 ZNF362 ZBTB33 NCBP2-AS2 PIGZ GC03M196709 PIGX
GH03F196960 0.2 ENCODE 0.3 +19.8 19779 3.1 MLX ARID4B DMAP1 SLC30A9 PAF1 SP5 MXD4 PPARG KAT8 MIER3 PIGZ NCBP2-AS2
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around NCBP2-AS2 on UCSC Golden Path with GeneCards custom track

Promoters for NCBP2-AS2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001383961 -323 2601 HDGF CREB3L1 MLX WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9

Genomic Location for NCBP2-AS2 Gene

Chromosome:
3
Start:
196,942,623 bp from pter
End:
196,944,013 bp from pter
Size:
1,391 bases
Orientation:
Plus strand

Genomic View for NCBP2-AS2 Gene

Genes around NCBP2-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NCBP2-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NCBP2-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NCBP2-AS2 Gene

Proteins for NCBP2-AS2 Gene

  • Protein details for NCBP2-AS2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q69YL0-NCAS2_HUMAN
    Recommended name:
    Uncharacterized protein NCBP2-AS2
    Protein Accession:
    Q69YL0

    Protein attributes for NCBP2-AS2 Gene

    Size:
    99 amino acids
    Molecular mass:
    10891 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NCBP2-AS2 Gene

Post-translational modifications for NCBP2-AS2 Gene

No Post-translational modifications

Other Protein References for NCBP2-AS2 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for NCBP2-AS2 Gene

Domains & Families for NCBP2-AS2 Gene

Protein Domains for NCBP2-AS2 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with NCBP2-AS2: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NCBP2-AS2 Gene

Function for NCBP2-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NCBP2-AS2 Gene

Localization for NCBP2-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NCBP2-AS2 Gene

Pathways & Interactions for NCBP2-AS2 Gene

SuperPathways for NCBP2-AS2 Gene

No Data Available

Interacting Proteins for NCBP2-AS2 Gene

Selected Interacting proteins: Q69YL0-NCAS2_HUMAN for NCBP2-AS2 Gene via IID

Gene Ontology (GO) - Biological Process for NCBP2-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NCBP2-AS2 Gene

Transcripts for NCBP2-AS2 Gene

mRNA/cDNA for NCBP2-AS2 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for NCBP2-AS2 Gene

No ASD Table

Relevant External Links for NCBP2-AS2 Gene

GeneLoc Exon Structure for
NCBP2-AS2
ECgene alternative splicing isoforms for
NCBP2-AS2

Expression for NCBP2-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NCBP2-AS2 Gene

Protein differential expression in normal tissues from HIPED for NCBP2-AS2 Gene

This gene is overexpressed in Stomach (28.4), Gallbladder (8.1), and Placenta (6.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for NCBP2-AS2 Gene



Protein tissue co-expression partners for NCBP2-AS2 Gene

genes like me logo Genes that share expression patterns with NCBP2-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for NCBP2-AS2 Gene

Orthologs for NCBP2-AS2 Gene

Evolution for NCBP2-AS2 Gene

ENSEMBL:
Gene Tree for NCBP2-AS2 (if available)
TreeFam:
Gene Tree for NCBP2-AS2 (if available)

No data available for Orthologs for NCBP2-AS2 Gene

Paralogs for NCBP2-AS2 Gene

No data available for Paralogs for NCBP2-AS2 Gene

Variants for NCBP2-AS2 Gene

Sequence variations from dbSNP and Humsavar for NCBP2-AS2 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1054278 -- 196,943,221(+) GGAGA(A/C)AGCCC nc-transcript-variant, upstream-variant-2KB
rs113165664 -- 196,941,121(+) GAGAA(A/G)GAATA intron-variant, upstream-variant-2KB
rs115005109 -- 196,942,527(+) ACAAT(A/G/T)CGGCG upstream-variant-2KB, utr-variant-5-prime
rs11544135 -- 196,942,900(+) GCTCC(A/C)TGTGC nc-transcript-variant, upstream-variant-2KB
rs115898338 -- 196,942,001(+) GCTTC(A/G)CCGAT intron-variant, upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for NCBP2-AS2 Gene

Variant ID Type Subtype PubMed ID
esv2763775 CNV gain+loss 21179565
esv3599293 CNV gain 21293372
nsv1003135 CNV gain 25217958
nsv593086 CNV loss 21841781

Relevant External Links for NCBP2-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NCBP2-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NCBP2-AS2 Gene

Disorders for NCBP2-AS2 Gene

Relevant External Links for NCBP2-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NCBP2-AS2

No disorders were found for NCBP2-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NCBP2-AS2 Gene

Publications for NCBP2-AS2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3 64
  3. N-terminome analysis of the human mitochondrial proteome. (PMID: 25944712) Vaca Jacome A.S. … Carapito C. (Proteomics 2015) 4 64
  4. An important role for CDK2 in G1 to S checkpoint activation and DNA damage response in human embryonic stem cells. (PMID: 21319273) Neganova I. … Lako M. (Stem Cells 2011) 3 64
  5. The full-ORF clone resource of the German cDNA consortium. (PMID: 17974005) Bechtel S. … Schupp I. (BMC Genomics 2007) 4 64

Products for NCBP2-AS2 Gene

Sources for NCBP2-AS2 Gene

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