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Aliases for NCBP2-AS2 Gene

Subcategory (RNA class) for NCBP2-AS2 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for NCBP2-AS2 Gene

  • NCBP2 Antisense RNA 2 (Head To Head) 2 3 5
  • NCBP2 Antisense Gene Protein 2 4
  • NCBP2 Antisense RNA 2 4

External Ids for NCBP2-AS2 Gene

ORGUL Members for NCBP2-AS2 Gene

Previous GeneCards Identifiers for NCBP2-AS2 Gene

  • GC03P196671

Summaries for NCBP2-AS2 Gene

GeneCards Summary for NCBP2-AS2 Gene

NCBP2-AS2 (NCBP2 Antisense RNA 2 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for NCBP2-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NCBP2-AS2 Gene

Genomics for NCBP2-AS2 Gene

Regulatory Elements for NCBP2-AS2 Gene

Enhancers for NCBP2-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H196938 1.2 ENCODE 35.7 -0.2 -246 7 HDGF PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 NCBP2-AS2 PIGZ SENP5 NCBP2-AS1 NCBP2
GH03H196866 1 ENCODE 29.1 -74.6 -74578 2 HDGF ATF1 ARNT ARID4B SIN3A BRCA1 YY1 ETS1 GATA2 ELK1 NCBP2-AS2 RPL36P7 NCBP2 NCBP2-AS1 CEP19 SENP5 GC03M196873
GH03H196968 1.6 FANTOM5 ENCODE dbSUPER 6.9 +26.8 26770 2 PKNOX1 SIN3A ZNF766 GLIS2 ZNF143 ZNF207 ATF7 RUNX3 REST SMARCB1 SDHAP1 LOC220729 LRCH3 UBXN7 ENSG00000234742 SENP5 RPL35A PIGZ NCBP2-AS1 UBXN7-AS1
GH03H196676 0.2 dbSUPER 5.8 -264.9 -264898 2 NCBP2-AS2 PIGZ GC03M196709 PIGX
GH03H196960 1.2 ENCODE dbSUPER 0.4 +19.8 19779 3 ELF3 FOXA2 MLX ARID4B DMAP1 RARA SLC30A9 CREM MIXL1 PAF1 PIGZ NCBP2-AS2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NCBP2-AS2 on UCSC Golden Path with GeneCards custom track

Promoters for NCBP2-AS2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000164473 -223 2401 HDGF PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9

Genomic Location for NCBP2-AS2 Gene

Chromosome:
3
Start:
196,942,623 bp from pter
End:
196,944,013 bp from pter
Size:
1,391 bases
Orientation:
Plus strand

Genomic View for NCBP2-AS2 Gene

Genes around NCBP2-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NCBP2-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NCBP2-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NCBP2-AS2 Gene

Proteins for NCBP2-AS2 Gene

  • Protein details for NCBP2-AS2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q69YL0-NCAS2_HUMAN
    Recommended name:
    Uncharacterized protein NCBP2-AS2
    Protein Accession:
    Q69YL0

    Protein attributes for NCBP2-AS2 Gene

    Size:
    99 amino acids
    Molecular mass:
    10891 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NCBP2-AS2 Gene

Post-translational modifications for NCBP2-AS2 Gene

No Post-translational modifications

Other Protein References for NCBP2-AS2 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for NCBP2-AS2 Gene

Domains & Families for NCBP2-AS2 Gene

Gene Families for NCBP2-AS2 Gene

Human Protein Atlas (HPA):
  • Predicted secreted proteins

Protein Domains for NCBP2-AS2 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with NCBP2-AS2: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NCBP2-AS2 Gene

Function for NCBP2-AS2 Gene

Phenotypes From GWAS Catalog for NCBP2-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NCBP2-AS2 Gene

Localization for NCBP2-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NCBP2-AS2 Gene

Pathways & Interactions for NCBP2-AS2 Gene

SuperPathways for NCBP2-AS2 Gene

No Data Available

Interacting Proteins for NCBP2-AS2 Gene

Selected Interacting proteins: Q69YL0-NCAS2_HUMAN for NCBP2-AS2 Gene via IID

Gene Ontology (GO) - Biological Process for NCBP2-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NCBP2-AS2 Gene

Drugs & Compounds for NCBP2-AS2 Gene

No Compound Related Data Available

Transcripts for NCBP2-AS2 Gene

mRNA/cDNA for NCBP2-AS2 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for NCBP2-AS2 Gene

No ASD Table

Relevant External Links for NCBP2-AS2 Gene

GeneLoc Exon Structure for
NCBP2-AS2
ECgene alternative splicing isoforms for
NCBP2-AS2

Expression for NCBP2-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NCBP2-AS2 Gene

Protein differential expression in normal tissues from HIPED for NCBP2-AS2 Gene

This gene is overexpressed in Stomach (28.4), Gallbladder (8.1), and Placenta (6.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for NCBP2-AS2 Gene



Protein tissue co-expression partners for NCBP2-AS2 Gene

genes like me logo Genes that share expression patterns with NCBP2-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NCBP2-AS2 Gene

Orthologs for NCBP2-AS2 Gene

Evolution for NCBP2-AS2 Gene

ENSEMBL:
Gene Tree for NCBP2-AS2 (if available)
TreeFam:
Gene Tree for NCBP2-AS2 (if available)

No data available for Orthologs for NCBP2-AS2 Gene

Paralogs for NCBP2-AS2 Gene

No data available for Paralogs for NCBP2-AS2 Gene

Variants for NCBP2-AS2 Gene

Sequence variations from dbSNP and Humsavar for NCBP2-AS2 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000108563 -- 196,941,161(+) GGCGC(A/G)ATCTC intron-variant, upstream-variant-2KB
rs1000807537 -- 196,940,812(+) AATCA(G/T)GCCTG intron-variant, upstream-variant-2KB
rs1000859702 -- 196,941,070(+) GACTC(G/T)GTCTC intron-variant, upstream-variant-2KB
rs1001237265 -- 196,941,428(+) AGCGT(C/G)AAACA intron-variant, upstream-variant-2KB
rs1001268638 -- 196,941,693(+) CCAAC(C/T)GTATT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for NCBP2-AS2 Gene

Variant ID Type Subtype PubMed ID
esv2763775 CNV gain+loss 21179565
esv3599293 CNV gain 21293372
nsv1003135 CNV gain 25217958
nsv593086 CNV loss 21841781

Relevant External Links for NCBP2-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NCBP2-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NCBP2-AS2 Gene

Disorders for NCBP2-AS2 Gene

Relevant External Links for NCBP2-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NCBP2-AS2

No disorders were found for NCBP2-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NCBP2-AS2 Gene

Publications for NCBP2-AS2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 60
  2. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein MY … Mann M (Cell 2015) 3 60
  3. N-terminome analysis of the human mitochondrial proteome. (PMID: 25944712) Vaca Jacome AS … Carapito C (Proteomics 2015) 4 60
  4. An important role for CDK2 in G1 to S checkpoint activation and DNA damage response in human embryonic stem cells. (PMID: 21319273) Neganova I … Lako M (Stem cells (Dayton, Ohio) 2011) 3 60
  5. The full-ORF clone resource of the German cDNA Consortium. (PMID: 17974005) Bechtel S … Schupp I (BMC genomics 2007) 4 60

Products for NCBP2-AS2 Gene

Sources for NCBP2-AS2 Gene

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