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Aliases for NCAPG Gene

Aliases for NCAPG Gene

  • Non-SMC Condensin I Complex Subunit G 2 3 4 5
  • Chromosome Condensation Protein G 2 3
  • Chromosome-Associated Protein G 3 4
  • Melanoma Antigen NY-MEL-3 3 4
  • Condensin Subunit CAP-G 3 4
  • XCAP-G Homolog 3 4
  • CAPG 3 4
  • Non-SMC Condensin I Complex, Subunit G 2
  • Condensin Complex Subunit 3 3
  • NY-MEL-3 3
  • NYMEL3 4
  • HCAP-G 4
  • CHCG 3
  • YCG1 3

External Ids for NCAPG Gene

Previous GeneCards Identifiers for NCAPG Gene

  • GC04P017421
  • GC04P017167

Summaries for NCAPG Gene

Entrez Gene Summary for NCAPG Gene

  • This gene encodes a subunit of the condensin complex, which is responsible for the condensation and stabilization of chromosomes during mitosis and meiosis. Phosphorylation of the encoded protein activates the condensin complex. There are pseudogenes for this gene on chromosomes 8 and 15. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2012]

GeneCards Summary for NCAPG Gene

NCAPG (Non-SMC Condensin I Complex Subunit G) is a Protein Coding gene. Among its related pathways are Aurora B signaling and Mitotic Prometaphase. GO annotations related to this gene include binding.

UniProtKB/Swiss-Prot for NCAPG Gene

  • Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.

Gene Wiki entry for NCAPG Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NCAPG Gene

Genomics for NCAPG Gene

Regulatory Elements for NCAPG Gene

Enhancers for NCAPG Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G017575 1.5 FANTOM5 ENCODE 11.5 -232.2 -232183 5.3 HDGF PKNOX1 FOXA2 MLX ARNT AGO1 WRNIP1 ARID4B SIN3A DMAP1 LAP3 MED28 DCAF16 ENSG00000249502 NCAPG QDPR LCORL GC04M017599
GH04G017543 1.5 FANTOM5 Ensembl ENCODE 10.3 -266.2 -266238 1.3 PKNOX1 FOXA2 ATF1 MLX ARID4B SP5 ZHX2 MIER3 ETV4 FOXP1 CLRN2 QDPR NCAPG DCAF16 GC04M017552
GH04G017807 1.4 Ensembl ENCODE 9 +0.3 336 7.6 HNRNPUL1 HDGF PKNOX1 MLX CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 DCAF16 MED28 LCORL NCAPG GC04M017884
GH04G017548 1 Ensembl ENCODE 11.8 -261.5 -261454 1.3 HDAC1 CTCF ATF1 IRF2 SAP130 HINFP ARNT ARID4B SIN3A RAD21 QDPR DCAF16 NCAPG ENSG00000249502 MED28 GC04M017552 CLRN2
GH04G017817 0.7 ENCODE 10 +6.4 6420 0.2 HDGF CTCF FOXA2 TRIM22 RAD21 FOXA1 CBX5 ZNF143 SMC3 MLLT1 LCORL NCAPG GC04M017884
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NCAPG on UCSC Golden Path with GeneCards custom track

Promoters for NCAPG Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000166452 -113 4601 HNRNPUL1 HDGF PKNOX1 MLX CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2

Genomic Location for NCAPG Gene

Chromosome:
4
Start:
17,810,813 bp from pter
End:
17,844,865 bp from pter
Size:
34,053 bases
Orientation:
Plus strand

Genomic View for NCAPG Gene

Genes around NCAPG on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NCAPG Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NCAPG Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NCAPG Gene

Proteins for NCAPG Gene

  • Protein details for NCAPG Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BPX3-CND3_HUMAN
    Recommended name:
    Condensin complex subunit 3
    Protein Accession:
    Q9BPX3
    Secondary Accessions:
    • Q3MJE0
    • Q96SV9
    • Q9BUR3
    • Q9BVY1
    • Q9H914
    • Q9H9Z6
    • Q9HBI9

    Protein attributes for NCAPG Gene

    Size:
    1015 amino acids
    Molecular mass:
    114334 Da
    Quaternary structure:
    • Component of the condensin complex, which contains the SMC2 and SMC4 heterodimer, and three non SMC subunits that probably regulate the complex: NCAPH/BRRN1, NCAPD2/CAPD2 and NCAPG.
    Miscellaneous:
    • Overexpressed in some cancer lines and some tumor cells.
    SequenceCaution:
    • Sequence=AAH00827.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAB14429.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAB55165.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

neXtProt entry for NCAPG Gene

Post-translational modifications for NCAPG Gene

  • Phosphorylated by CDK1. Its phosphorylation, as well as that of NCAPD2 and NCAPH subunits, activates the condensin complex and is required for chromosome condensation (By similarity).
  • Ubiquitination at Lys11, Lys235, Lys522, Lys717, and posLast=852852
  • Modification sites at PhosphoSitePlus

Other Protein References for NCAPG Gene

No data available for DME Specific Peptides for NCAPG Gene

Domains & Families for NCAPG Gene

Protein Domains for NCAPG Gene

Suggested Antigen Peptide Sequences for NCAPG Gene

Graphical View of Domain Structure for InterPro Entry

Q9BPX3

UniProtKB/Swiss-Prot:

CND3_HUMAN :
  • Belongs to the CND3 (condensin subunit 3) family.
Family:
  • Belongs to the CND3 (condensin subunit 3) family.
genes like me logo Genes that share domains with NCAPG: view

No data available for Gene Families for NCAPG Gene

Function for NCAPG Gene

Molecular function for NCAPG Gene

UniProtKB/Swiss-Prot Function:
Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.

Gene Ontology (GO) - Molecular Function for NCAPG Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 12138188
genes like me logo Genes that share ontologies with NCAPG: view

Phenotypes for NCAPG Gene

GenomeRNAi human phenotypes for NCAPG:
genes like me logo Genes that share phenotypes with NCAPG: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for NCAPG Gene

Localization for NCAPG Gene

Subcellular locations from UniProtKB/Swiss-Prot for NCAPG Gene

Nucleus. Cytoplasm. Chromosome. Note=In interphase cells, the majority of the condensin complex is found in the cytoplasm, while a minority of the complex is associated with chromatin. A subpopulation of the complex however remains associated with chromosome foci in interphase cells. During mitosis, most of the condensin complex is associated with the chromatin. At the onset of prophase, the regulatory subunits of the complex are phosphorylated by CDK1, leading to condensins association with chromosome arms and to chromosome condensation. Dissociation from chromosomes is observed in late telophase.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for NCAPG gene
Compartment Confidence
nucleus 5
cytosol 5
cytoskeleton 2

Gene Ontology (GO) - Cellular Components for NCAPG Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000779 condensed chromosome, centromeric region IEA --
GO:0000793 condensed chromosome IEA --
GO:0000796 condensin complex IEA,IDA 11136719
GO:0005634 nucleus NAS 10910072
GO:0005694 chromosome IEA --
genes like me logo Genes that share ontologies with NCAPG: view

Pathways & Interactions for NCAPG Gene

genes like me logo Genes that share pathways with NCAPG: view

Pathways by source for NCAPG Gene

1 BioSystems pathway for NCAPG Gene
1 GeneGo (Thomson Reuters) pathway for NCAPG Gene

Gene Ontology (GO) - Biological Process for NCAPG Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007049 cell cycle IEA --
GO:0007067 mitotic nuclear division IEA --
GO:0007076 mitotic chromosome condensation IEA,NAS 10910072
GO:0030261 chromosome condensation IEA --
GO:0051301 cell division IEA --
genes like me logo Genes that share ontologies with NCAPG: view

No data available for SIGNOR curated interactions for NCAPG Gene

Drugs & Compounds for NCAPG Gene

No Compound Related Data Available

Transcripts for NCAPG Gene

Unigene Clusters for NCAPG Gene

Non-SMC condensin I complex, subunit G:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for NCAPG Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8a · 8b ^ 9a · 9b ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18a · 18b ^ 19 ^ 20 ^
SP1: - - - -
SP2:
SP3:
SP4:
SP5:

ExUns: 21
SP1:
SP2:
SP3:
SP4:
SP5:

Relevant External Links for NCAPG Gene

GeneLoc Exon Structure for
NCAPG
ECgene alternative splicing isoforms for
NCAPG

Expression for NCAPG Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NCAPG Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for NCAPG Gene

This gene is overexpressed in Testis (x5.9).

Protein differential expression in normal tissues from HIPED for NCAPG Gene

This gene is overexpressed in Bone (38.3), Breast (8.7), and Pancreas (6.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for NCAPG Gene



Protein tissue co-expression partners for NCAPG Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of NCAPG Gene:

NCAPG

SOURCE GeneReport for Unigene cluster for NCAPG Gene:

Hs.567567

mRNA Expression by UniProt/SwissProt for NCAPG Gene:

Q9BPX3-CND3_HUMAN
Tissue specificity: Highly expressed in testis.

Evidence on tissue expression from TISSUES for NCAPG Gene

  • Blood(4.2)
  • Skin(4.2)
genes like me logo Genes that share expression patterns with NCAPG: view

Primer Products

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for NCAPG Gene

Orthologs for NCAPG Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for NCAPG Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia NCAPG 34 35
  • 99.87 (n)
cow
(Bos Taurus)
Mammalia NCAPG 34
  • 90.17 (n)
HCAP-G 35
  • 89 (a)
OneToOne
dog
(Canis familiaris)
Mammalia NCAPG 34 35
  • 88.52 (n)
mouse
(Mus musculus)
Mammalia Ncapg 34 16 35
  • 86.45 (n)
rat
(Rattus norvegicus)
Mammalia Ncapg 34
  • 86.03 (n)
oppossum
(Monodelphis domestica)
Mammalia NCAPG 35
  • 75 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia NCAPG 35
  • 63 (a)
OneToOne
chicken
(Gallus gallus)
Aves NCAPG 34 35
  • 70.79 (n)
lizard
(Anolis carolinensis)
Reptilia NCAPG 35
  • 60 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ncapg 34
  • 64.65 (n)
MGC76110 34
African clawed frog
(Xenopus laevis)
Amphibia LOC398088 34
zebrafish
(Danio rerio)
Actinopterygii ncapg 34 35
  • 59.07 (n)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.13920 34
fruit fly
(Drosophila melanogaster)
Insecta Cap-G 34 35
  • 40.69 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP007568 34
  • 39.45 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes YCG1 35 37
  • 20 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 34 (a)
OneToOne
Species where no ortholog for NCAPG was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for NCAPG Gene

ENSEMBL:
Gene Tree for NCAPG (if available)
TreeFam:
Gene Tree for NCAPG (if available)

Paralogs for NCAPG Gene

Pseudogenes.org Pseudogenes for NCAPG Gene

genes like me logo Genes that share paralogs with NCAPG: view

No data available for Paralogs for NCAPG Gene

Variants for NCAPG Gene

Sequence variations from dbSNP and Humsavar for NCAPG Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
VAR_036125 A colorectal cancer sample
rs10002231 -- 17,808,840(+) cctgg(C/G)caaca intron-variant, upstream-variant-2KB
rs1000271043 -- 17,839,139(+) TCAGT(A/G)TCTTG intron-variant
rs1000308888 -- 17,811,378(+) CAGAA(A/G)GCCTC intron-variant, upstream-variant-2KB
rs1000326272 -- 17,831,513(+) GAAAA(A/T)TAAAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NCAPG Gene

Variant ID Type Subtype PubMed ID
esv2425595 CNV deletion 19546169
esv2645526 CNV deletion 19546169
esv3893889 CNV loss 25118596
nsv819190 CNV gain 19587683

Variation tolerance for NCAPG Gene

Residual Variation Intolerance Score: 24.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.86; 79.40% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for NCAPG Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NCAPG

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NCAPG Gene

Disorders for NCAPG Gene

Relevant External Links for NCAPG

Genetic Association Database (GAD)
NCAPG
Human Genome Epidemiology (HuGE) Navigator
NCAPG
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NCAPG

No disorders were found for NCAPG Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NCAPG Gene

Publications for NCAPG Gene

  1. Serological cloning of a melanocyte rab guanosine 5'-triphosphate- binding protein and a chromosome condensation protein from a melanoma complementary DNA library. (PMID: 10910072) Jaeger D. … Chen Y.-T. (Cancer Res. 2000) 2 3 4 22 64
  2. Chromosome condensation by a human condensin complex in Xenopus egg extracts. (PMID: 11136719) Kimura K. … Hirano T. (J. Biol. Chem. 2001) 2 3 4 64
  3. A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci. (PMID: 20189936) Okada Y. … Kamatani N. (Hum. Mol. Genet. 2010) 3 46 64
  4. The role of height-associated loci identified in genome wide association studies in the determination of pediatric stature. (PMID: 20546612) Zhao J. … Grant S.F. (BMC Med. Genet. 2010) 3 46 64
  5. Many sequence variants affecting diversity of adult human height. (PMID: 18391951) Gudbjartsson D.F. … Stefansson K. (Nat. Genet. 2008) 3 46 64

Products for NCAPG Gene

Sources for NCAPG Gene

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