Free for academic non-profit institutions. Other users need a Commercial license

Aliases for NCAM1-AS1 Gene

Subcategory (RNA class) for NCAM1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NCAM1-AS1 Gene

  • NCAM1 Antisense RNA1 2 3 5

External Ids for NCAM1-AS1 Gene

Previous GeneCards Identifiers for NCAM1-AS1 Gene

  • GC11M113145

Summaries for NCAM1-AS1 Gene

GeneCards Summary for NCAM1-AS1 Gene

NCAM1-AS1 (NCAM1 Antisense RNA1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NCAM1-AS1 Gene

Genomics for NCAM1-AS1 Gene

Regulatory Elements for NCAM1-AS1 Gene

Enhancers for NCAM1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G113187 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.2 +82.8 82843 7.1 PKNOX1 ATF1 CREB3L1 ZSCAN4 FEZF1 CREM CEBPB NR2F2 CREB3 SMARCA4 NCAM1-AS1 NCAM1 GC11P112980
GH11G112960 1.6 FANTOM5 ENCODE dbSUPER 9.9 +311.2 311227 3.8 PKNOX1 SIN3A FEZF1 GLI4 ZNF2 GLIS2 KLF7 ZNF263 SP3 YY2 NCAM1 LOC105369499 NCAM1-AS1 LOC101928847
GH11G113183 1.6 FANTOM5 Ensembl ENCODE dbSUPER 9.7 +89.3 89327 1.4 TFAP4 TFE3 JUN MAX USF2 CEBPB CEBPG EP300 RFX5 JUND NCAM1-AS1 NCAM1 GC11P112980
GH11G112612 0.8 Ensembl ENCODE 9.9 +659.8 659786 3.4 RFX1 JUND GLIS1 JUN PRDM10 FOS EP300 NCAM1 NCAM1-AS1 ENSG00000212397 GC11M112603 LOC105369496
GH11G114129 1.3 Ensembl ENCODE dbSUPER 5.4 -859.9 -859863 8.1 CTCF ETV1 TEAD4 CEBPG RAD21 YY1 FOSL1 GATA2 SCRT2 PRDM10 NCAM1-AS1 LOC101928875 GC11M114060
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NCAM1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for NCAM1-AS1 Gene

Chromosome:
11
Start:
113,269,532 bp from pter
End:
113,273,901 bp from pter
Size:
4,370 bases
Orientation:
Minus strand

Genomic View for NCAM1-AS1 Gene

Genes around NCAM1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NCAM1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NCAM1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NCAM1-AS1 Gene

Proteins for NCAM1-AS1 Gene

Post-translational modifications for NCAM1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NCAM1-AS1 Gene

Domains & Families for NCAM1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NCAM1-AS1 Gene

Function for NCAM1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NCAM1-AS1 Gene

Localization for NCAM1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NCAM1-AS1 Gene

Pathways & Interactions for NCAM1-AS1 Gene

SuperPathways for NCAM1-AS1 Gene

No Data Available

Interacting Proteins for NCAM1-AS1 Gene

Gene Ontology (GO) - Biological Process for NCAM1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NCAM1-AS1 Gene

Drugs & Compounds for NCAM1-AS1 Gene

No Compound Related Data Available

Transcripts for NCAM1-AS1 Gene

mRNA/cDNA for NCAM1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NCAM1-AS1 Gene

No ASD Table

Relevant External Links for NCAM1-AS1 Gene

GeneLoc Exon Structure for
NCAM1-AS1
ECgene alternative splicing isoforms for
NCAM1-AS1

Expression for NCAM1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NCAM1-AS1 Gene

genes like me logo Genes that share expression patterns with NCAM1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NCAM1-AS1 Gene

Orthologs for NCAM1-AS1 Gene

Evolution for NCAM1-AS1 Gene

ENSEMBL:
Gene Tree for NCAM1-AS1 (if available)
TreeFam:
Gene Tree for NCAM1-AS1 (if available)

No data available for Orthologs for NCAM1-AS1 Gene

Paralogs for NCAM1-AS1 Gene

No data available for Paralogs for NCAM1-AS1 Gene

Variants for NCAM1-AS1 Gene

Sequence variations from dbSNP and Humsavar for NCAM1-AS1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000017383 -- 113,270,147(+) TCGCA(A/T)CTCAG intron-variant
rs1000300789 -- 113,274,980(+) GAAAG(C/G)ACTCG intron-variant, upstream-variant-2KB
rs1000820631 -- 113,273,887(+) GGCTG(A/G)GATAA intron-variant, nc-transcript-variant
rs1001287371 -- 113,274,242(+) CACCC(A/T)CCCCT intron-variant, upstream-variant-2KB
rs1001890170 -- 113,269,309(+) GGCTG(A/G)GTCTT intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for NCAM1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv483080 CNV loss 15286789

Relevant External Links for NCAM1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NCAM1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NCAM1-AS1 Gene

Disorders for NCAM1-AS1 Gene

Relevant External Links for NCAM1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NCAM1-AS1

No disorders were found for NCAM1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NCAM1-AS1 Gene

Publications for NCAM1-AS1 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 64
  2. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey S.D. … Anand S. (Diabetes Care 2010) 3 64
  3. Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip. (PMID: 19913121) Talmud P.J. … . (Am. J. Hum. Genet. 2009) 3 64

Products for NCAM1-AS1 Gene

Sources for NCAM1-AS1 Gene

Content
Loading form....