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Aliases for NCAM1-AS1 Gene

Subcategory (RNA class) for NCAM1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NCAM1-AS1 Gene

  • NCAM1 Antisense RNA1 2 3 5

External Ids for NCAM1-AS1 Gene

Previous GeneCards Identifiers for NCAM1-AS1 Gene

  • GC11M113145

Summaries for NCAM1-AS1 Gene

GeneCards Summary for NCAM1-AS1 Gene

NCAM1-AS1 (NCAM1 Antisense RNA1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for NCAM1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NCAM1-AS1 Gene

Genomics for NCAM1-AS1 Gene

GeneHancer (GH) Regulatory Elements for NCAM1-AS1 Gene

Promoters and enhancers for NCAM1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I112960 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 9.9 +311.2 311227 3.8 PKNOX1 SIN3A FEZF1 GLI4 ZNF2 GLIS2 ZNF213 ZNF143 KLF7 KLF13 NCAM1 LOC101928847 ENSG00000270179 NKAPD1 ZW10 TTC12 NCAM1-AS1
GH11I113187 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.2 +82.8 82843 7.1 PKNOX1 ATF1 ZSCAN4 FEZF1 RCOR1 ATF7 RUNX3 CREM NR2F2 ZNF148 NCAM1-AS1 NCAM1 GC11P112980
GH11I113183 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 9.7 +89.3 89327 1.4 TFAP4 TFE3 JUN MAX USF2 CEBPB CEBPG EP300 RFX5 JUND NCAM1-AS1 NCAM1 GC11P112980
GH11I112612 Enhancer 0.7 Ensembl ENCODE 9.9 +659.8 659786 3.4 SP1 JUND POLR2A GLIS1 JUN PRDM10 NCAM1 NCAM1-AS1 GC11M112603 ENSG00000212397 LOC105369496 LOC101928823
GH11I114129 Enhancer 1.1 Ensembl ENCODE dbSUPER 5.4 -859.9 -859863 8.1 CTCF ETV1 CEBPG RAD21 YY1 FOSL1 GATA3 POLR2A SCRT2 NFE2 NCAM1-AS1 LOC101928875 GC11M114060 ZBTB16
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around NCAM1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NCAM1-AS1 Gene

Genomic Locations for NCAM1-AS1 Gene
chr11:113,269,532-113,273,901
(GRCh38/hg38)
Size:
4,370 bases
Orientation:
Minus strand
chr11:113,140,254-113,144,623
(GRCh37/hg19)

Genomic View for NCAM1-AS1 Gene

Genes around NCAM1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NCAM1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NCAM1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NCAM1-AS1 Gene

Proteins for NCAM1-AS1 Gene

Post-translational modifications for NCAM1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NCAM1-AS1 Gene

Domains & Families for NCAM1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NCAM1-AS1 Gene

Function for NCAM1-AS1 Gene

Phenotypes From GWAS Catalog for NCAM1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NCAM1-AS1 Gene

Localization for NCAM1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NCAM1-AS1 Gene

Pathways & Interactions for NCAM1-AS1 Gene

SuperPathways for NCAM1-AS1 Gene

No Data Available

Interacting Proteins for NCAM1-AS1 Gene

Gene Ontology (GO) - Biological Process for NCAM1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NCAM1-AS1 Gene

Drugs & Compounds for NCAM1-AS1 Gene

No Compound Related Data Available

Transcripts for NCAM1-AS1 Gene

mRNA/cDNA for NCAM1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NCAM1-AS1 Gene

No ASD Table

Relevant External Links for NCAM1-AS1 Gene

GeneLoc Exon Structure for
NCAM1-AS1
ECgene alternative splicing isoforms for
NCAM1-AS1

Expression for NCAM1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NCAM1-AS1 Gene

genes like me logo Genes that share expression patterns with NCAM1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NCAM1-AS1 Gene

Orthologs for NCAM1-AS1 Gene

Evolution for NCAM1-AS1 Gene

ENSEMBL:
Gene Tree for NCAM1-AS1 (if available)
TreeFam:
Gene Tree for NCAM1-AS1 (if available)

No data available for Orthologs for NCAM1-AS1 Gene

Paralogs for NCAM1-AS1 Gene

No data available for Paralogs for NCAM1-AS1 Gene

Variants for NCAM1-AS1 Gene

Sequence variations from dbSNP and Humsavar for NCAM1-AS1 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000017383 -- 113,270,147(-) T/A intron_variant
rs1000300789 -- 113,274,980(-) G/C upstream_transcript_variant
rs1000820631 -- 113,273,887(-) G/A non_coding_transcript_variant
rs1001287371 -- 113,274,242(-) T/A upstream_transcript_variant
rs1001890170 -- 113,269,309(-) A/G downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for NCAM1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv483080 CNV loss 15286789

Additional Variant Information for NCAM1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NCAM1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NCAM1-AS1 Gene

Disorders for NCAM1-AS1 Gene

Additional Disease Information for NCAM1-AS1

No disorders were found for NCAM1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NCAM1-AS1 Gene

Publications for NCAM1-AS1 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 58
  2. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey SD … DREAM investigators (Diabetes care 2010) 3 58
  3. Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip. (PMID: 19913121) Talmud PJ … BRIGHT Consortium (American journal of human genetics 2009) 3 58

Products for NCAM1-AS1 Gene

Sources for NCAM1-AS1 Gene

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