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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

NCAM1 Gene

protein-coding GIFtS: 72
GCID: GC11P112831

neural cell adhesion molecule 1

Explore 160 diseases affiliated with
NCAM1 via

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
Neural Cell Adhesion Molecule 1¹ ²		Neural Cell Adhesion Molecule, NCAM²
NCAM¹ ² ³		N-CAM-1³
CD56¹ ²		NCAM-1³
MSK39² ⁵		CD56 Antigen³
Antigen Recognized By Monoclonal Antibody 5.1H11²

External Ids:	HGNC: 7656¹	Entrez Gene: 4684²	Ensembl: ENSG00000149294⁷	OMIM: 116930⁵	UniProtKB: P13591³

Export aliases for NCAM1 gene to outside databases

Previous GC identifers: GC11P115185 GC11P114344 GC11P112866 GC11P112369 GC11P112337 GC11P108759

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for NCAM1:

This gene encodes a cell adhesion protein which is a member of the immunoglobulin superfamily. The encoded protein is

involved in cell-to-cell interactions as well as cell-matrix interactions during development and differentiation. The

encoded protein has been shown to be involved in development of the nervous system, and for cells involved in the

expansion of T cells and dendritic cells which play an important role in immune surveillance. Alternative splicing

results in multiple transcript variants. (provided by RefSeq, Jun 2011)

UniProtKB/Swiss-Prot: NCAM1_HUMAN, P13591

Function: This protein is a cell adhesion molecule involved in neuron-neuron adhesion, neurite fasciculation, outgrowth

of neurites, etc

Gene Wiki entry for NCAM1 (Neural cell adhesion molecule)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000011.9 NC_018922.1 NT_033899.8

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the NCAM1 gene promoter:
AML1a
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: NCAM1 promoter sequence

Search SABiosciences Chromatin IP Primers for NCAM1

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat NCAM1

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11q23.1 Ensembl cytogenetic band: 11q23.2 HGNC cytogenetic band: 11q23.2

NCAM1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
NCAM1 gene location

GeneLoc information about chromosome 11 GeneLoc Exon Structure

GeneLoc location for GC11P112831: view genomic region (about GC identifiers)

Start:	112,831,995 bp from pter	End:	113,149,158 bp from pter
Size:	317,164 bases	Orientation:	plus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: NCAM1_HUMAN, P13591 (See protein sequence)

Recommended Name: Neural cell adhesion molecule 1 precursor

Size: 858 amino acids; 94574 Da

Subcellular location: Isoform 1: Cell membrane; Single-pass type I membrane protein

Subcellular location: Isoform 2: Cell membrane; Single-pass type I membrane protein

Subcellular location: Isoform 3: Cell membrane; Lipid-anchor, GPI-anchor

Subcellular location: Isoform 4: Cell membrane; Lipid-anchor, GPI-anchor (Potential)

Subcellular location: Isoform 5: Secreted

Subcellular location: Isoform 6: Secreted (Potential)

Sequence caution: Sequence=BAD92680.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;

5 PDB 3D structures from and Proteopedia for NCAM1:

2E3V (3D)

2HAZ (3D)

2VKW (3D)

2VKX (3D)

3MTR (3D)

Secondary accessions: A8K8T8 P13592 P13593 Q05C58 Q15829 Q16180 Q16209 Q59FL7 Q86X47 Q96CJ3

Alternative splicing: 6 isoforms: P13591-2 P13591-1 P13591-3, P13592-2 P13591-4 P13591-5, P13592-1 P13591-6 (May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay)

Explore the universe of human proteins at neXtProt for NCAM1: NX_P13591

Post-translational modifications:

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_P13591

NCAM1 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins (5 alternative transcripts):

NP_000606.3 NP_001070150.1 NP_001229536.1 NP_001229537.1 NP_851996.2

ENSEMBL proteins:

ENSP00000433345 ENSP00000384055 ENSP00000318472 ENSP00000390982

Reactome Protein details: P13591
Human Recombinant Protein Products:

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	Novus Biologicals NCAM1 Proteins Novus Biologicals NCAM1 Lysates
	Browse Sino Biological Recombinant Proteins
	ProSpec Recombinant Protein for NCAM1
	Uscn Proteins for NCAM1

Gene Ontology (GO): 5/11 cellular component terms (GO ID links to tree view) (see all 11): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0000139	Golgi membrane	TAS	--
GO:0005576	extracellular region	IEA	--
GO:0005886	plasma membrane	TAS	--
GO:0009897	external side of plasma membrane	IDA	17213291
GO:0009986	cell surface	IDA	10766765

NCAM1 for ontologies About GeneDecksing

NCAM1 Antibody Products:

	EMD Millipore Mono- and Polyclonal Antibodies for the study of NCAM1
	R&D Systems Antibodies for NCAM1 (NCAM-1/CD56)
	Cell Signaling Technology (CST) Antibodies for NCAM1
	OriGene Antibodies (see all 4): NCAM1 OriGene Custom Antibody Services for NCAM1
	GenScript Superior Antibodies for NCAM1
	Novus Biologicals NCAM1 Antibodies
	Abcam antibodies for NCAM1
	Uscn Antibodies for NCAM1
	ThermoFisher Antibody for NCAM1

Assay Products for NCAM1:

	Browse Kits and Assays available from EMD Millipore
	OriGene Custom Immunoassay Development Browse OriGene Fluorogenic Cell Assay Kits
	R&D Systems ELISAs for NCAM1 (NCAM-1/CD56) (see all)
	GenScript Custom Assay Services for NCAM1
	Browse Enzo Life Sciences for kits & assays
	Uscn ELISAs and CLIAs for NCAM1

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

NCAM1 for domains About GeneDecksing

5/6 InterPro domains/families (see all 6):

IPR003598 Ig_sub2

IPR007110 Ig-like_dom

IPR003961 Fibronectin_type3

IPR013098 Ig_I-set

IPR009138 Neural_cell_adh

Graphical View of Domain Structure for InterPro Entry P13591

ProtoNet protein and cluster: P13591

3 Blocks protein families:

IPB003598 Immunoglobulin C-2 type

IPB009138 Neural cell adhesion molecule signature

IPB013098 Immunoglobulin I-set

UniProtKB/Swiss-Prot: NCAM1_HUMAN, P13591

Similarity: Contains 2 fibronectin type-III domains

Similarity: Contains 5 Ig-like C2-type (immunoglobulin-like) domains

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Function Summary:

UniProtKB/Swiss-Prot: NCAM1_HUMAN, P13591

Function: This protein is a cell adhesion molecule involved in neuron-neuron adhesion, neurite fasciculation, outgrowth

of neurites, etc

Genatlas biochemistry entry for NCAM1:

cell adhesion molecule,neural,1,immunoglobulin superfamily

miRNA Products:		miRTarBase miRNAs that target NCAM1: hsa-mir-210 (MIRT003159), hsa-mir-122 (MIRT003090)

		OriGene 3'-UTR Clone (see all 3): NCAM1 Browse MicroRNA Expression Plasmids
		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat NCAM1
		8/37 QIAGEN miScript miRNA Assays for microRNAs that regulate NCAM1 (see all 37):
		hsa-miR-124* hsa-miR-100* hsa-miR-429 hsa-miR-128 hsa-miR-200a hsa-miR-16-1* hsa-miR-30d hsa-miR-141

		SwitchGear 3'UTR luciferase reporter plasmid: NCAM1 3' UTR sequence

Inhib. RNA Products:		Browse for Gene Knock-down Tools from EMD Millipore
		OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for NCAM1 (see all 7) OriGene shRNA RFP: NCAM1 OriGene siRNA: NCAM1
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Gene Editing
Products:

DNA2.0 Custom Protein Engineering Service for NCAM1

Clone Products:		Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
		OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for NCAM1 (see all 8) OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for NCAM1 (see all 3) OriGene custom cloning services � gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
		GenScript: all cDNA clones in your preferred vector (see all 3): NCAM1 (NM_001076682)
		Browse Sino Biological Human cDNA Clones
		DNA2.0 Custom Codon Optimized Gene Synthesis Service for NCAM1
		Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat NCAM1

Cell Line Products:		GenScript Custom overexpressing Cell Line Services for NCAM1
		LifeMap BioReagents: cell line associated with NCAM1: PureStem 4D20.8, NCr-fac Progenitor

In Situ Assay
Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NCAM1

Gene Ontology (GO): 1 molecular function term (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005515	protein binding	--	--

NCAM1 for ontologies About GeneDecksing

3 GenomeRNAi human phenotypes for NCAM1:

Decreased cell number, increas

Synthetic lethal with Ras

Synthetic lethal with c-Myc af

Animal Models:
Mouse knock-outs for NCAM1: Ncam1^tm2Mag Ncam1^tm1.1Mag Ncam1^tm1Cgn Ncam1^tm1Mag
6 MGI mutant phenotypes (inferred from 6 alleles) (MGI details for Ncam1):

behavior/neurological	cellular	growth/size	mortality/aging	nervous system
vision/eye

NCAM1 for phenotypes About GeneDecksing

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Unified GeneCards pathways - 5/12 super-pathways (see all 12) About this table

See pathways by source

Super-pathway

contained gene-specific pathways

Axon guidance

	Axon guidance	1.00			L1CAM interactions	0.39
	Developmental Biology	0.69			Signal transduction by L1	0.12

Cell adhesion_Cell-matrix glycoconjugates

Cell adhesion_Cell-matrix glycoconjugates

1.00

Cell adhesion Cell-matrix glycoconjugates

0.97

Interferon gamma signaling

Interferon gamma signaling

1.00

Expression of IFNG-stimulated genes

0.72

NCAM signaling for neurite out-growth

NCAM signaling for neurite out-growth

1.00

NCAM1 interactions

0.62

Cytokine Signaling in Immune system

Cytokine Signaling in Immune system

1.00

Interferon Signaling

0.61

Pathway sources
See GeneCards unified pathways
Show all pathways

1 EMD Millipore Pathway for NCAM1

Cell adhesion Cell-matrix glycoconjugates

3 Cell Signaling Technology (CST) Pathways for NCAM1

	Neuroscience
	Lymphocyte Signaling
	Adhesion

1 GeneGo (Thomson Reuters) Pathway for NCAM1

Cell adhesion Cell-matrix glycoconjugates

1 BioSystems Pathway for NCAM1

FGF signaling pathway

5/11 Reactome Pathways for NCAM1 (see all 11)

	L1CAM interactions
	Developmental Biology
	Interferon gamma signaling
	Cytokine Signaling in Immune system
	NCAM1 interactions

2 Kegg Pathways (Kegg details for NCAM1):

	Cell adhesion molecules (CAMs)
	Prion diseases

NCAM1 for pathways About GeneDecksing

Interactions:

SABiosciences Gene Network Central^TM Interacting Genes and Proteins Network for NCAM1

STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

5/91 Interacting proteins for NCAM1 (P13591^{2, 3} ENSP00000318472⁴) via UniProtKB, MINT, STRING, and/or I2D (see all 91)

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
BDNF	P23560³, ENSP00000414303⁴	I2D: score=1 STRING: ENSP00000414303
GDNF	P39905³, ENSP00000317145⁴	I2D: score=1 STRING: ENSP00000317145
MDK	P21741³, ENSP00000352852⁴	I2D: score=1 STRING: ENSP00000352852
PRKCB	P05771³, ENSP00000305355⁴	I2D: score=1 STRING: ENSP00000305355
SPTB	P11277³, ENSP00000374372⁴	I2D: score=1 STRING: ENSP00000374372

About this table

Gene Ontology (GO): 5/9 biological process terms (GO ID links to tree view) (see all 9): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0001928	regulation of exocyst assembly	IEA	--
GO:0007155	cell adhesion	NAS	10770948
GO:0007166	cell surface receptor signaling pathway	--	--
GO:0007411	axon guidance	TAS	--
GO:0019221	cytokine-mediated signaling pathway	TAS	--

NCAM1 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

NCAM1 for compounds About GeneDecksing

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for NCAM1
10/57 Novoseek chemical compound relationships for NCAM1 gene (see all 57) About this table

Compound	-log (P-Val)	Hits	PubMed IDs for Articles with Shared Sentences (# sentences)
nkh 1	75.8	1	1706237 (1)
fuc-gm1	64.6	1	7982239 (1)
sialic acid	53.4	32	17986141 (3), 9774483 (2), 8567623 (2), 1891065 (1) (see all 21)
neurocan	49.9	17	8910306 (5), 7513709 (4), 8663515 (2), 11766883 (1)
smcc	38.1	3	15010880 (1), 14652811 (1)
retinoic acid	36.1	21	7522652 (3), 10222420 (3), 9222276 (2), 16469417 (2) (see all 8)
chondroitin sulfate	33.1	13	16181411 (3), 8663515 (2), 8910306 (2), 7513709 (2) (see all 6)
paraffin	28	9	9416693 (2), 14959847 (2), 10821486 (1), 15309466 (1) (see all 6)
tyrosine	27.7	17	9559292 (1), 9168199 (1), 11520897 (1), 18772882 (1) (see all 16)
polysaccharide	17	12	12791681 (3), 18981104 (2), 7726560 (2), 11598089 (1) (see all 8)

Search CenterWatch for drugs/clinical trials and news about NCAM1

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for NCAM1 gene (5 alternative transcripts):

NM_000615.6 NM_001076682.3 NM_001242607.1 NM_001242608.1 NM_181351.4

Unigene Clusters for NCAM1:

Neural cell adhesion molecule 1

Hs.503878 [show with all ESTs], Hs.733031 [show with all ESTs]

Unigene Representative Sequences: NM_001242607, X55322

18/31 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 31):

ENST00000531915 ENST00000527506 ENST00000533760(uc001pnp.3 uc021qqo.1)

ENST00000528742 ENST00000397957(uc021qqp.1 uc001pnq.3 uc001pnr.3 uc001pns.3)

ENST00000534618 ENST00000526427 ENST00000524665 ENST00000529420(uc001pno.3)

ENST00000531838 ENST00000534015 ENST00000525973 ENST00000531044 ENST00000529356

ENST00000534046 ENST00000530543 ENST00000526322 ENST00000531817

miRNA Products:		OriGene 3'-UTR Clone (see all 3): NCAM1 Browse OriGene MicroRNA Expression Plasmids
		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat NCAM1
		8/37 QIAGEN miScript miRNA Assays for microRNAs that regulate NCAM1 (see all 37):
		hsa-miR-124* hsa-miR-100* hsa-miR-429 hsa-miR-128 hsa-miR-200a hsa-miR-16-1* hsa-miR-30d hsa-miR-141

		SwitchGear 3'UTR luciferase reporter plasmid: NCAM1 3' UTR sequence

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		QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat NCAM1
		QIAGEN QuantiFast Probe-based Assays in human, mouse, rat NCAM1

Additional cDNA sequence: X55322.1

24/26 DOTS entries (see all 26):

DT.120699894 DT.100786315 DT.91779848 DT.91947069 DT.120699994 DT.87017842 DT.95243682 DT.305278

DT.100786313 DT.319668 DT.101973402 DT.120700032 DT.100677975 DT.120699897 DT.120699900 DT.120699934

DT.120699940 DT.120699950 DT.120699974 DT.120699977 DT.40262367 DT.423052 DT.95267640 DT.120699938

24/303 AceView cDNA sequences (see all 303):

M17409 BM664047 BM692477 AI264045 AA334449 AI083705 BF530497 AA774090

BE935920 AW129092 AI962556 BU730268 BM804748 AV725113 AI075858 BF341180

BF059414 AL157650 AI582842 BM970307 BM709462 AW007527 BM510929 BM784425

GeneLoc Exon Structure

5 Alternative Splicing Database (ASD) splice patterns (SP) for NCAM1 About this scheme

ExUns:	1	^	2	^	3	^	4	^	5	^	6	^	7	^	8	^	9	^	10	^	11	^	12	^	13	^	14	^	15a	·	15b	^	16a	·	16b	^	17a	·	17b	^	18	^	19	^	20
SP1:																													-				-		-		-						-
SP2:															-														-
SP3:
SP4:
SP5:

ECgene alternative splicing isoforms for NCAM1

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

NCAM1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: CAAGAGTTTT

About this image

NCAM1 expression in embryonic tissues and stem cells

Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

10/37 LifeMap In Vivo Development Anatomical Compartments/Cells (see all 37)

Tissue

Anatomical Compartment

Cell

Category (developmental path)

Blood

Rostral Synchondroses

Bone, Cartilage

Bone, Cartilage

Bone, Cartilage

Endocardium

Metanephric Mesenchyme

Metanephric Mesenchyme Cells

Kidney

Bone

Autopod Epiphyseal End

Prechondrocytes

Bone, Cartilage

Bone

Stylopod Epiphyseal End

Prechondrocytes

Bone, Cartilage

Bone

Zeugopod Epiphyseal End

Prechondrocytes

Bone, Cartilage

Bone

Autopod Perichondrium

Endochondral Preosteoblasts

Bone

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

Stem Cell Differentiation: 10/12 LifeMap Cells (see all 12)

Name

Category

PureStem™ progenitor T36 (Embryonic Progenitor Cell)

Blimp1- mVenus and stella-ECFP genetically modified stem cells (Embryonic Stem Cell)

Early Embryo, Inner Cell Mass

Natural killer-like cells (Derivation of hemato...)

GABA neuron-like cells (Generation of motor ...)

Brain

Anterior neural specified EBs (Differentiation of h...)

Neurospheres (Generation of neuros...)

NCAM-positive cells (Generation of skelet...)

Mixed skeletal precursors (Generation of skelet...)

Midbrain neural progenitor-like cells (Differentiation of h...)

Photoreceptor-like cells (Differentiation of h...)

See NCAM1 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for NCAM1

SOURCE GeneReport for Unigene clusters: Hs.503878 Hs.733031

SABiosciences Expression via Pathway-Focused PCR Arrays including NCAM1 (see all 6):

cAMP / Ca2+ Signaling PathwayFinder in human mouse rat

Extracellular Matrix & Adhesion Molecules in human mouse rat

Cell Surface Markers in human mouse rat

Lymphoma in human mouse rat

Synaptic Plasticity in human mouse rat

Primer Products:		OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for NCAM1 Browse OriGene validated miRNA SYBR primer pairs
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		QIAGEN QuantiFast Probe-based Assays in human, mouse, rat NCAM1

In Situ
Assay Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NCAM1

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of animals.

Orthologs for NCAM1 gene from 5/16 species (see all 16) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
chicken (Gallus gallus)	Aves	NCAM1¹	neural cell adhesion molecule 1	81.93(n) 88.37(a)		428253 NM_001128828.1 NP_001122300.1
lizard (Anolis carolinensis)	Reptilia	NCAM1⁶	--	64(a)	1 ↔ 1	GL343354.1(608176-677439)
African clawed frog (Xenopus laevis)	Amphibia	NCAM²	cell adhesion molecule	76.27(n)		M76710.1
zebrafish (Danio rerio)	Actinopterygii	AY029402.1²	--	75.44(n)		30447 AY029402.1
honey bee (Apis mellifera)	Insecta	--	--	17(a)	possible ortholog	Group2.12(589688-640550)

ENSEMBL Gene Tree for NCAM1 (if available)
TreeFam Gene Tree for NCAM1 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
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Paralogs for NCAM1 gene

NCAM2² NTM² NEGR1² IGLON5² LSAMP² OPCML²

3 SIMAP similar genes for NCAM1 using alignment to 6 protein entries: NCAM1_HUMAN (see all proteins):

NCAM2 NTM K-SAM

NCAM1 for paralogs About GeneDecksing

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
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SNP ID	Valid	Clinical significance	Chr 11 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs77149491^1,2	C,	--	108759567(+)	`AAATCC/GCAGCT`	5	--	us2k¹		2		WA	120
rs7942799^1,2	C,F,A,	--	108760763(+)	`CTGAAG/CGATGG`	5	--	int¹		6		NA WA CSA EA	246
rs12272270^1,2		--	108761267(+)	`GGGCGG/CACATT`	5	--	int¹		4		NA WA EA	242
rs73573285^1,2	C,F,	--	108761497(+)	`CGGCGA/TCCAAT`	5	--	int¹		3		WA NA EA	358
rs6589351^1,2	C,F,A,H,	--	108761941(+)	`GGAGGG/TGTGGG`	5	--	int¹		2		WA EA	238
rs73573289^1,2	C,	--	108762599(+)	`TGTCCG/AGGGCA`	5	--	int¹		1		WA	2
rs112035566^1,2		--	108762788(+)	`GTATAC/AATTTT`	5	--	int¹		1		CSA	2
rs77207826^1,2	F,	--	108762954(+)	`GCTACT/CTTACA`	5	--	int¹		1		NA	120
rs76069517^1,2	F,	--	108763034(+)	`AAGTTG/AACTGT`	5	--	int¹		1		NA	120
rs77163774^1,2	C,	--	108763838(+)	`CTCAG-/TTAGGT`	5	--	int¹		0	--	--	--	--

HapMap Linkage Disequilibrium report for NCAM1 (112831995 - 113081995 bp, first 250kb of NCAM1)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 4 variations for NCAM1
3 CNVs: 48692 86044 66071
1 Indel: 48691
Human Gene Mutation Database (HGMD): NCAM1

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

NCAM1 for disorders           About GeneDecksing

OMIM gene information: 116930    OMIM disorders: --

20/160 diseases for NCAM1 (see all 160):    About MalaCards

monoclonal gammopathy of uncertain significance lethal midline granuloma monoclonal gammopathy of undetermined significance inclusion body myopathy

primary pigmented nodular adrenocortical disease spinal muscular atrophy diffuse large b-cell lymphoma langerhans-cell histiocytosis

hypersensitivity reaction type ii disease primitive neuroectodermal tumor pyloric stenosis bile duct cancer

muscular dystrophy centronuclear myopathy myxopapillary ependymoma becker muscular dystrophy

b-cell lymphomas plasma cell leukemia neuroectodermal tumors hemophagocytic lymphohistiocytosis

11 diseases from the University of Copenhagen DISEASES database for NCAM1:

Lymphoma Leukemia Multiple myeloma Carcinoma

Hemophagocytic lymphohistiocytosis Lung cancer Neuroblastoma Leukopenia

Hypersensitivity reaction type II disease Myeloid sarcoma Germ cell cancer

10/92 Novoseek disease relationships for NCAM1 gene (see all 92) About this table

Disease	-log (P-Val)	Hits	PubMed IDs for Articles with Shared Sentences (# sentences)
small cell lung cancer	65.1	37	16159442 (6), 9416693 (3), 2165922 (3), 1314069 (1) (see all 18)
carcinoma neuroendocrine	58.5	4	18726606 (1), 8141431 (1), 7773512 (1)
peripheral neuroepithelioma	49.6	1	1867319 (1)
neuroendocrine tumors	49.2	9	10821486 (1), 12744370 (1), 16115052 (1), 15242781 (1) (see all 8)
carcinoma merkel cell	49.1	5	16115052 (3), 7773512 (2)
sma ii	47.4	1	8583219 (1)
tumors	46.4	236	9587126 (7), 12744370 (6), 11249065 (5), 7523154 (5) (see all 99)
plasma cell myeloma	43.9	7	1721526 (2), 8520507 (1), 17122631 (1), 18480010 (1)
centronuclear myopathy	43.7	2	1517767 (1), 7969799 (1)
hirschsprung disease	42.7	10	8689902 (3), 11854929 (2), 8176609 (2), 8405855 (2) (see all 5)

Genetic Association Database (GAD): NCAM1
Human Genome Epidemiology (HuGE) Navigator: NCAM1 (30 documents)

Export disorders for NCAM1 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
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PubMed articles for NCAM1 gene, integrated from 9 sources (see all 785):
(articles sorted by number of sources associating them with NCAM1)

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Molecular and functional analysis of human natural killer cell- associated neural cell adhesion molecule (N-CAM/CD56). (PubMed id 1710251)^{1, 2, 9} Lanier L.L....Phillips J.H. (1991)
Splicing of the VASE exon of neural cell adhesion molecule (NCAM) in human small-cell lung carcinoma (SCLC). (PubMed id 1339414)^{1, 2, 9} van Duijnhoven H.L.... Patel K. (1992)
Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry. (PubMed id 16335952)^{1, 2} Liu T.... Smith R.D. (2005)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)^{1, 2} Ota T.... Sugano S. (2004)
Association of neural cell adhesion molecule 1 gene polymorphisms with bipolar affective disorder in Japanese individuals. (PubMed id 15050861)^{1, 4} Arai M....Yoshikawa T. (2004)
Complementary DNA sequence encoding the major neural cell adhesion molecule isoform in a human small cell lung cancer cell line. (PubMed id 8075973)^{1, 2} Saito S.... Kawase I. (1994)
Complete sequence and in vitro expression of a tissue-specific phosphatidylinositol-linked N-CAM isoform from skeletal muscle. (PubMed id 3253057)^{1, 2} Barton C.H.... Walsh F.S. (1988)
Alternative splicing generates a secreted form of N-CAM in muscle and brain. (PubMed id 3203385)^{1, 2} Gower H.J.... Walsh F.S. (1988)
Human muscle neural cell adhesion molecule (N-CAM): identification of a muscle-specific sequence in the extracellular domain. (PubMed id 2887295)^{1, 2} Dickson G.... Walsh F.S. (1987)
Clinicopathological correlates of plasma cell CD56 (NCAM) expression in multiple myeloma. (PubMed id 18231917)^{1, 9} Kraj M....Szpila T. (2008)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Disorders
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 4684	HGNC: 7656	AceView: NCAM1	Ensembl:ENSG00000149294	euGenes: HUgn4684
ECgene: NCAM1	Kegg: 4684	H-InvDB: NCAM1

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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Name	Description
PharmGKB entry for NCAM1	Pharmacogenomics, SNPs, Pathways
ATLAS Chromosomes in Cancer entry for NCAM1	Genetics and Cytogenetics in Oncology and Haematology
Wikipedia	http://en.wikipedia.org/wiki/NCAM
Functional Glycomics Gateway - Glycan Binding	http://www.functionalglycomics.org/glycomics/GBPServlet?&operationType=view&cbpId=cbp_hum_Itlect_264

Intellectual Property for NCAM1 gene
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Patent Information for NCAM1 gene:
Search GeneIP for patents involving NCAM1

GeneCards and IP:
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NCAM1 Gene

neural cell adhesion molecule 1

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Dementia
LUNG TUMOR
PLASMACYTOSIS
Pituitary Tumors
involvement CNS
Bile Duct Cancer
INCLUSION BODY MYOPATHY
Lymphoma T-Cell
Transitional Meningioma
COLON CARCINOMA
LUNG CARCINOMA
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SMA II
PANCREATIC CARCINOMA
plasma cell myeloma
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chronic liver disease
Carcinoma Neuroendocrine
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Lymphoma T-Cell Peripheral
Polymyositis
LEUKAEMIA LYMPHOCYTIC

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NCAM1 Gene

neural cell adhesion molecule 1

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