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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

NBR2 Gene

RNA gene   GIFtS: 36
GCID: GC17P041277

Neighbor Of BRCA1 Gene 2 (Non-Protein Coding)

(Previous name: neighbor of BRCA1 gene 2)
  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Subcategory (RNA class): lncRNA

Quality score for this RNA gene is 3

Aliases
Neighbor Of BRCA1 Gene 2 (Non-Protein Coding)1 2
Neighbor Of BRCA1 Gene 21
Non-Protein Coding RNA 1921
NCRNA001922
Neighbor Of BRCA1 Gene 2 Protein3

External Ids:    HGNC: 206911   Entrez Gene: 102302   Ensembl: ENSG000001984967   UniProtKB: O154533   
ORGUL members:         
NONCODE14:n383179 n383181 n386184 n383180      

Export aliases for NBR2 gene to outside databases

Previous GC identifers: GC17P041024 GC17P043442 GC17P041186 GC17P041650 GC17P038531 GC17P037043


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for NBR2 Gene:
This gene was identified by its close proximity on chromosome 17 to tumor suppressor gene BRCA1. Experimental
evidence indicates that the two genes share a bi-directional promoter. Transcription for either gene is
controlled individually by distinct transcriptional repressor factors. A short (112 amino acid) open reading
frame is observed which includes a region derived from a LINE1 element. A strong Kozak signal is not observed for
the putative ORF and the stop codon is more than 55 bases upstream of the last splice site for the transcript
suggesting that the transcript is subject to nonsense-mediated decay. Therefore, this gene does not appear to
encode a protein. (provided by RefSeq, Jul 2008)

GeneCards Summary for NBR2 Gene: 
NBR2 (neighbor of BRCA1 gene 2 (non-protein coding)) is an RNA gene, and is affiliated with the lncRNA class. Diseases associated with NBR2 include bilateral breast cancer, and sporadic breast cancer.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000017.10  NC_018928.2  NT_010783.15  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the NBR2 gene promoter:
         ATF-2   c-Jun   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for NBR2

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat NBR2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17q21   Ensembl cytogenetic band:  17q21.31   HGNC cytogenetic band: 17q21

NBR2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
NBR2 gene location

GeneLoc information about chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17P041277:  view genomic region     (about GC identifiers)

Start:
41,277,600 bp from pter      End:
41,305,688 bp from pter
Size:
28,089 bases      Orientation:
plus strand
ORGUL member locations:
Legend (see complete legend)

ORGUL Member Locations for NBR2

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: NBR2_HUMAN, O15453 (See protein sequence)
Recommended Name: Next to BRCA1 gene 2 protein  
Size: 112 amino acids; 12357 Da
Miscellaneous: BRCA1 and NBR2 genes may be coregulated, depending on the relative abundance of specific
transcription factors. When balance between expression of the two genes is disrupted, abnormal cell growth and
differentiation may occur
Secondary accessions: Q3LRJ7

Explore the universe of human proteins at neXtProt for NBR2: NX_O15453

NBR2 Protein expression data from MOPED1, PaxDb2 and MAXQB3 : --

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section
HGNC Gene Families: 
LNCRNA: Long non-coding RNAs

ProtoNet protein and cluster: O15453


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
About This Section

Phenotypes:
     1 GenomeRNAi human phenotype for NBR2:
 Synthetic lethal with Ras 

Animal Models:
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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
About This Section




Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for NBR2

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
Browse Small Molecules at EMD Millipore
Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for NBR2

Search CenterWatch for drugs/clinical trials and news about NBR2

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
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About This Section

REFSEQ mRNAs for NBR2 gene: 
NM_005821.4  

Unigene Clusters for NBR2:

Neighbor of BRCA1 gene 2 (non-protein coding)
Hs.373818  [show with all ESTs], Hs.559259  [show with all ESTs]
Unigene Representative Sequences: BC034248, BQ883641
4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000460115(uc002idg.3) ENST00000356906(uc002idf.3 uc010czb.2)
ENST00000467245(uc002idh.3) ENST00000587322
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Additional mRNA sequence: 

BC000924.3 BT007332.1 

24/37 DOTS entries (see all 37):

DT.100832873  DT.92417048  DT.97858444  DT.120910787  DT.75190497  DT.40108675  DT.100816331  DT.120982774 
DT.120983128  DT.87015353  DT.97838754  DT.120982812  DT.95340910  DT.75119216  DT.102839963  DT.87008244 
DT.95263448  DT.99928669  DT.120983134  DT.437274  DT.91680369  DT.92464067  DT.95305503  DT.100728131 

24/69 AceView cDNA sequences (see all 69):

AY597810 BQ286035 CD358597 NM_005821 BQ269397 BQ019077 BF935789 BC034248 
CD103023 BU542220 BV179550 BV196057 AW117709 AI633677 BI259104 BM806681 
AV691787 BU552436 U88573 BM046519 BC022065 AU135669 AA551672 AA463326 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

Expression evidence for NBR2:none

NBR2 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: TGCCGGGAGG
NBR2 Expression
About this image


Genevestigator expression for NBR2

SOURCE GeneReport for Unigene clusters: Hs.373818 Hs.559259

UniProtKB/Swiss-Prot: NBR2_HUMAN, O15453
Tissue specificity: Ubiquitous

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In Situ
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section
  --

ENSEMBL Gene Tree for NBR2 (if available)
TreeFam Gene Tree for NBR2 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
Paralogs for NBR2 gene
3 SIMAP similar genes for NBR2 using alignment to 2 protein entries:     NBR2_HUMAN (see all proteins):
ARL17A    ARL17B    ARL17

NBR2 for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

10/373 SNPs in NBR2 are shown (see all 373)    About this table     
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 17 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1837963231,2
--41279529(+) TGTAAA/GCGCAC 1 -- int10--------
rs80770351,2
C,F--41279534(+) acgcaC/Tcaatc 1 -- int12Minor allele frequency- T:0.50NA 4
rs7999101,2
C,F,A--41279561(+) caaatG/Ctagtg 1 -- int14Minor allele frequency- C:0.33MN NA EA 250
rs1478727581,2
--41279633(+) GTATAG/TCTAGC 1 -- int10--------
rs1416646321,2
--41279762(+) CCCGCG/TGGGTG 1 -- int10--------
rs344101381,2
C,F--41279770(-) GCCACT/CGGCAC 1 -- int19Minor allele frequency- C:0.29MN NA WA CSA EA 373
rs359811661,2
C,F--41279837(-) GTCTCT/GATCTC 1 -- int15Minor allele frequency- G:0.33MN NA WA CSA 9
rs129477821,2
C,F,A--41279882(+) taaaaG/Agacaa 1 -- int16Minor allele frequency- A:0.27MN NA WA CSA 11
rs1128817751,2
C--41279884(+) AAAAG-/ACAAAAT 1 -- int11Minor allele frequency- AC:0.50CSA 2
rs1814206371,2
--41279885(+) AAAGAC/GAAAAT 1 -- int10--------

HapMap Linkage Disequilibrium report for NBR2 (41277600 - 41305688 bp)

Structural Variations
     Database of Genomic Variants (DGV) 5 variations for NBR2:    About this table     
Variant IDTypeSubtypePubMed ID
esv2672913CNV Deletion23128226
nsv457743CNV Loss19166990
nsv470587CNV Loss18288195
nsv908259CNV Loss21882294
esv33998OTHER Inversion15654335

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section
3 diseases for NBR2:    About MalaCards
bilateral breast cancer    sporadic breast cancer    breast cancer


NBR2 for disorders           About GeneDecksing


Export disorders for NBR2 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for NBR2 gene, integrated from 9 sources (see all 13):
(articles sorted by number of sources associating them with NBR2)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Isolation and characterisation of the NBR2 gene which lies head to head with the human BRCA1 gene. (PubMed id 9215675)1, 2, 3 Xu C.-F....Solomon E. (1997)
  2. Model of transcriptional regulation of the BRCA1-NBR2 bi-directional transcriptional unit. (PubMed id 15777733)1, 3 Suen T.C....Goss P.E. (2005)
  3. A de novo complete BRCA1 gene deletion identified in a Spanish woman with early bilateral breast cancer. (PubMed id 21989022)1 Garcia-Casado Z....Lopez-Guerrero J.A. (2011)
  4. Comparative analysis of cancer genes in the human and chimpanzee genomes. (PubMed id 16438707)1 Puente X.S....Lopez-Otin C. (2006)
  5. Specific binding of the methyl binding domain protein 2 at the BRCA1-NBR2 locus. (PubMed id 16052033)1 Auriol E....Dante R. (2005)
  6. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
  7. Structural evolution of the BRCA1 genomic region in primates. (PubMed id 15533724)1 Jin H....Roberts R.G. (2004)
  8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
  9. Expression profiles and intergenic structure of head-to-head oriented Brca1 and Nbr1 genes. (PubMed id 11179671)1 Dimitrov S.... Forejt J. (2001)
  10. Expression of BRCA1, NBR1 and NBR2 genes in human breast cancer cells. (PubMed id 11508855)1 Dimitrov S.D....Forejt J. (2001)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 10230 HGNC: 20691 AceView: NBR2 Ensembl:ENSG00000198496 euGenes: HUgn10230
ECgene: NBR2 H-InvDB: NBR2

(According to HUGE)
About This Section
  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for NBR2 Pharmacogenomics, SNPs, Pathways
ATLAS Chromosomes in Cancer entry for NBR2 Genetics and Cytogenetics in Oncology and Haematology

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for NBR2 gene:
Search GeneIP for patents involving NBR2

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
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 Browse Proteins at Cloud-Clone Corp.
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 Search LifeMap BioReagents cell lines for NBR2
 Gene Synthesis
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 Protein Production and Purification
 Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NBR2
 Browse SwitchGear 3'UTR luciferase reporter plasmids for NBR2
 Browse SwitchGear Promoter luciferase reporter plasmids for NBR2
 ThermoFisher Antibodies for NBR2
 Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat NBR2
 inGenious Targeting Laboratory - Custom generated mouse model solutions for NBR2
 inGenious Targeting Laboratory - Custom generated inducible mouse model solutions for NBR2
Customized:
 lentivirus for stable overexpression of NBR2
 lentivirus expression plasmids for stable overexpression of NBR2
 adenovirus for overexpression of NBR2
 Search LSBio for Antibodies for NBR2
Customized transgenic rodents for:
 Humanization
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GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 3 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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transforming growth factor, beta 1
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