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NBPF21P Gene(Pseudogene)

NBPF Member 21, Pseudogene

GCID:
GC03M036633
GIFtS:
12
Genes Participants
UDN Logo

Aliases for NBPF21P Gene

Aliases for NBPF21P Gene

  • NBPF Member 21, Pseudogene 2 3 5
  • Neuroblastoma Breakpoint Family, Member 21, Pseudogene 2

External Ids for NBPF21P Gene

Summaries for NBPF21P Gene

Entrez Gene Summary for NBPF21P Gene

  • This pseudogene on chromosome 3 is a member of the neuroblastoma breakpoint family (NBPF) which consists of dozens of recently duplicated genes primarily located in segmental duplications on human chromosome 1. This gene family has experienced its greatest expansion within the human lineage and has expanded, to a lesser extent, among primates in general. Members of this gene family are characterized by tandemly repeated copies of DUF1220 protein domains. Gene copy number variations in the human chromosomal region 1q21.1, where most DUF1220 domains are located, have been implicated in a number of developmental and neurogenetic diseases such as microcephaly, macrocephaly, autism, schizophrenia, cognitive disability, congenital heart disease, neuroblastoma, and congenital kidney and urinary tract anomalies. Altered expression of some gene family members is associated with several types of cancer. This gene family contains numerous pseudogenes. [provided by RefSeq, Jun 2013]

GeneCards Summary for NBPF21P Gene

NBPF21P (NBPF Member 21, Pseudogene) is a Pseudogene. Diseases associated with NBPF21P include Neuroblastoma.

Additional gene information for NBPF21P Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NBPF21P Gene

Genomics for NBPF21P Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for NBPF21P Gene

Promoters and enhancers for NBPF21P Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH03I036635 Enhancer 0.2 dbSUPER 550.8 +1.7 1687 0.9 NBPF21P STAC
GH03I036647 Enhancer 1 ENCODE dbSUPER 0.4 -11.5 -11474 3.7 PKNOX1 ATF1 BATF ZBTB40 RFX5 RCOR1 FOS ATF7 CEBPB ZNF398 NBPF21P GC03P036685
GH03I036677 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.3 -41.3 -41341 4.1 GTF2E2 JUN TAL1 EBF1 CEBPG BATF ZBTB40 RFX5 FOSL1 ZNF547 DCLK3 GC03P036685 NBPF21P
GH03I036652 Enhancer 0.5 dbSUPER 0.4 -15.4 -15356 0.8 FOSL1 MEIS2 ZNF766 NFE2 ZFX NR2C2 NBPF21P GC03P036685
GH03I036380 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 0.1 +256.9 256948 1.7 ZSCAN5A KLF1 ZNF449 ZNF133 MAX KLF17 ZNF76 HIC1 E2F1 ZNF335 STAC NBPF21P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around NBPF21P on UCSC Golden Path with GeneCards custom track

Genomic Locations for NBPF21P Gene

Genomic Locations for NBPF21P Gene
chr3:36,616,006-36,637,797
(GRCh38/hg38)
Size:
21,792 bases
Orientation:
Minus strand
chr3:36,657,498-36,679,289
(GRCh37/hg19)

Genomic View for NBPF21P Gene

Genes around NBPF21P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NBPF21P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NBPF21P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for NBPF21P Gene

Proteins for NBPF21P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for NBPF21P Gene

No Post-translational modifications

No data available for DME Specific Peptides for NBPF21P Gene

Domains & Families for NBPF21P Gene

Gene Families for NBPF21P Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with NBPF21P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NBPF21P Gene

Function for NBPF21P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for NBPF21P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NBPF21P Gene

Localization for NBPF21P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NBPF21P Gene

Pathways & Interactions for NBPF21P Gene

SuperPathways for NBPF21P Gene

PathCards logo More details on SuperPathways for NBPF21P
No Data Available

Interacting Proteins for NBPF21P Gene

Gene Ontology (GO) - Biological Process for NBPF21P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NBPF21P Gene

Drugs & Compounds for NBPF21P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for NBPF21P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for NBPF21P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for NBPF21P Gene

No ASD Table

Relevant External Links for NBPF21P Gene

GeneLoc Exon Structure for
NBPF21P
ECgene alternative splicing isoforms for
NBPF21P

Expression for NBPF21P Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NBPF21P Gene

mRNA expression in normal human tissues for NBPF21P Gene
mRNA expression by GTEx for NBPF21P Gene

NURSA nuclear receptor signaling pathways regulating expression of NBPF21P Gene:

NBPF21P
genes like me logo Genes that share expression patterns with NBPF21P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NBPF21P Gene

Orthologs for NBPF21P Gene

Evolution for NBPF21P Gene

ENSEMBL:
Gene Tree for NBPF21P (if available)
TreeFam:
Gene Tree for NBPF21P (if available)

No data available for Orthologs for NBPF21P Gene

Paralogs for NBPF21P Gene

No data available for Paralogs for NBPF21P Gene

Variants for NBPF21P Gene

Additional Variant Information for NBPF21P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NBPF21P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NBPF21P Gene

Disorders for NBPF21P Gene

MalaCards: The human disease database

(1) MalaCards diseases for NBPF21P Gene - From: GeneCards

Disorder Aliases PubMed IDs
neuroblastoma
  • neuroblastoma, susceptibility to
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for NBPF21P

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with NBPF21P: view

No data available for UniProtKB/Swiss-Prot and Genatlas for NBPF21P Gene

Publications for NBPF21P Gene

  1. A novel gene family NBPF: intricate structure generated by gene duplications during primate evolution. (PMID: 16079250) Vandepoele K … van Roy F (Molecular biology and evolution 2005) 2 3 58
  2. Evolutionary history and genome organization of DUF1220 protein domains. (PMID: 22973535) O'Bleness MS … Sikela JM (G3 (Bethesda, Md.) 2012) 3 58

Products for NBPF21P Gene

Sources for NBPF21P Gene

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