NBPF20 Gene
protein-coding GIFtS: 31
GCID: GC01M148250
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neuroblastoma breakpoint family, member 20
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Aliases
for NBPF20 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Neuroblastoma Breakpoint Family, Member 201 | | LOC1002881422 | | Neuroblastoma Breakpoint Family Member2 |
Export aliases for NBPF20 gene to outside databasesPrevious GC identifers: GC01P9K0165 GC01M146616 |
Summaries
for NBPF20 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Gene Wiki entry for NBPF20 (NBPF10)
|
Genomic Views
for NBPF20 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the NBPF20 gene promoter:
Max1 AhR C/EBPbeta AML1a GCNF GATA-1 GCNF-1 c-Myb GCNF-2 c-Myc
Other transcription factors
Search SABiosciences Chromatin IP Primers for NBPF20
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat NBPF20 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 1q21.2 Ensembl cytogenetic band: 1q21.2 HGNC cytogenetic band: 1q21.2NBPF20 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 1 GeneLoc Exon Structure GeneLoc location for GC01M148250: view genomic region
(about GC identifiers)
Start:
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148,250,249 bp from pter |
End:
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148,361,181 bp from pter |
Size:
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110,933 bases |
Orientation:
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minus strand |
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Proteins
for NBPF20 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: NBPFK_HUMAN, Q3BBV1 (See
protein sequence)Recommended Name: Neuroblastoma breakpoint family member 20 Size: 942 amino acids; 108576 Da
Subcellular location: Cytoplasm (Probable)
Miscellaneous: Encoded by one of the numerous copies of NBPF genes clustered in the p36, p12 and q21 region of thechromosome 1Explore the universe of human proteins at neXtProt for NBPF20: NX_Q3BBV1
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q3BBV1
NBPF20 Protein expression data from MOPED and PaxDb: About this image 
ENSEMBL proteins: ENSP00000358203 ENSP00000358189 ENSP00000358190 ENSP00000389520
Human Recombinant Protein Products:
Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005737 | cytoplasm |
-- | -- |
NBPF20 for ontologies About GeneDecksing
NBPF20 Antibody Products:
Assay Products for NBPF20: |
Protein
Domains /
Families
for NBPF20 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
NBPF20 for domains About GeneDecksing
1 InterPro domain/family:Graphical View of Domain Structure for InterPro Entry Q3BBV1ProtoNet protein and cluster: Q3BBV1 UniProtKB/Swiss-Prot: NBPFK_HUMAN, Q3BBV1Similarity: Belongs to the NBPF familySimilarity: Contains 7 NBPF domains |
Function
for NBPF20 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NBPF20 |
|
Pathways & Interactions
for NBPF20 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for NBPF20
STRING Interaction
Network Preview (showing 2 interactants - click image to see more details)
2 Interacting proteins for NBPF20 (ENSP000003582034) via UniProtKB, MINT, STRING, and/or I2DAbout this table
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Drugs & Compounds
for NBPF20 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for NBPF20
Search CenterWatch for drugs/clinical trials and news about NBPF20 / NBPFK 
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Transcripts
for NBPF20 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
4 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000369202(uc021owf.1 uc001eri.1 uc021owj.1 uc021owp.1 uc021owb.1 uc021owk.1 uc010pan.1 uc021owm.1 uc021owu.1 uc001erg.1 uc001erq.1 uc001eru.1 uc021oww.1 uc021owq.1 uc021owv.1 uc021owg.1 uc021ows.1 uc021owy.1 uc021own.1 uc010paq.2 uc021owz.1 uc001erl.1 uc021owh.1 uc021owl.1 uc021owx.1 uc021oxa.1 uc021owt.1 uc021owr.1 uc001esa.1 uc001erb.3 uc021owo.1 uc001erc.4 uc001erd.4 uc010paj.2)
ENST00000369188(uc009wkf.1) ENST00000369189(uc010pav.2 uc010paw.2)
ENST00000414710
GeneLoc Exon Structure
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Expression
for NBPF20 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| NBPF20 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image
See NBPF20 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for NBPF20
SABiosciences Custom PCR Arrays for NBPF20
Primer
Products: |  | Browse OriGene genome-wide validated SYBR primer pairs
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat NBPF20 | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat NBPF20 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat NBPF20 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NBPF20 |
Orthologs
for NBPF20 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
--
ENSEMBL Gene Tree for NBPF20 (if available)
TreeFam Gene Tree for NBPF20 (if available) |
Paralogs
for NBPF20 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for NBPF20 gene
- NBPF32 NBPF62 NBPF82 ENSG000002326372 NBPF162 NBPF92 NBPF42 NBPF112
- NBPF242 NBPF152 NBPF142 NBPF102 NBPF122
18 SIMAP similar genes for NBPF20 using alignment to 2 protein entries: NBPFK_HUMAN (see all proteins):NBPF21 LOC101059961 NBPF1 NBPF15 NBPF16 AL592307.2
NBPF14 NBPF24 NBPF8 NBPF9 NBPF10 NBPF12
NBPF11 NBPF5 NBPF7 NBPF3 NBPF6 NBPF4
NBPF20 for paralogs About GeneDecksing
2 Pseudogenes.org Pseudogenes for NBPF20
PGOHUM00000244259 PGOHUM00000244926
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Genomic Variants
for NBPF20 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 1 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for NBPF20 (148250249 - 148361181 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for NBPF20: -- | SABiosciences Cancer Mutation PCR Assays |
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Disorders
/ Diseases
for NBPF20 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
NBPF20 for disorders About GeneDecksing
OMIM gene information: 614007
OMIM disorders: --
1  disease for NBPF20: About MalaCardsneuroblastoma
Export disorders for NBPF20 gene to outside databases
|
Publications
for NBPF20 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed article for NBPF20 gene integrated from 9 sources:
(articles sorted by number of sources associating them with NBPF20) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- A novel gene family NBPF: intricate structure generated by gene duplications during primate evolution. (PubMed id 16079250)2, 3 Vandepoele K.... van Roy F. (2005)
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External Searches for NBPF20 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing NBPF20 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing NBPF20 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing NBPF20 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
|
About This Section
| Patent Information for NBPF20 gene:
Search GeneIP for patents involving NBPF20
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for NBPF20 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
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 |
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|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat NBPF20 | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing NBPF20 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat NBPF20 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat NBPF20 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat NBPF20 | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat NBPF20 |
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 |  |  |  | |
| | | | Search Tocris compounds for NBPF20 |
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 | | | NBPF20 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NBPF20 |
|  |  |  | | | | Search ThermoFisher Antibodies for NBPF20 |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat NBPF20 |
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