Free for academic non-profit institutions. Other users need a Commercial license

Aliases for NBPF18P Gene

Aliases for NBPF18P Gene

  • Neuroblastoma Breakpoint Family Member 18, Pseudogene 2 3
  • Neuroblastoma Breakpoint Family, Member 18, Pseudogene 2

External Ids for NBPF18P Gene

Previous GeneCards Identifiers for NBPF18P Gene

  • GC01U901194
  • GC01P150253
  • GC01P151986

Summaries for NBPF18P Gene

Entrez Gene Summary for NBPF18P Gene

  • This pseudogene is a member of the neuroblastoma breakpoint family (NBPF) which consists of dozens of recently duplicated genes primarily located in segmental duplications on human chromosome 1. This gene family has experienced its greatest expansion within the human lineage and has expanded, to a lesser extent, among primates in general. Members of this gene family are characterized by tandemly repeated copies of DUF1220 protein domains. Gene copy number variations in the human chromosomal region 1q21.1, where most DUF1220 domains are located, have been implicated in a number of developmental and neurogenetic diseases such as microcephaly, macrocephaly, autism, schizophrenia, mental retardation, congenital heart disease, neuroblastoma, and congenital kidney and urinary tract anomalies. Altered expression of some gene family members is associated with several types of cancer. This gene family contains numerous pseudogenes. [provided by RefSeq, Jun 2013]

GeneCards Summary for NBPF18P Gene

NBPF18P (Neuroblastoma Breakpoint Family Member 18, Pseudogene) is a Pseudogene. Diseases associated with NBPF18P include Neuroblastoma.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NBPF18P Gene

Genomics for NBPF18P Gene

Regulatory Elements for NBPF18P Gene

Enhancers for NBPF18P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F152013 0.2 ENCODE 0.8 -4.5 -4459 0.2 CTCF ZNF654 MNT GATAD2B REST RAD21 SMARCA4 SMC3 PRDM1 SCNM1 THEM4 THEM5 S100A11 NBPF18P ENSG00000229021
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around NBPF18P on UCSC Golden Path with GeneCards custom track

Genomic Location for NBPF18P Gene

Chromosome:
1
Start:
152,018,278 bp from pter
End:
152,022,509 bp from pter
Size:
4,232 bases
Orientation:
Plus strand

Genomic View for NBPF18P Gene

Genes around NBPF18P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NBPF18P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NBPF18P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NBPF18P Gene

Proteins for NBPF18P Gene

Post-translational modifications for NBPF18P Gene

No Post-translational modifications

No data available for DME Specific Peptides for NBPF18P Gene

Domains & Families for NBPF18P Gene

Gene Families for NBPF18P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with NBPF18P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NBPF18P Gene

Function for NBPF18P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NBPF18P Gene

Localization for NBPF18P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NBPF18P Gene

Pathways & Interactions for NBPF18P Gene

SuperPathways for NBPF18P Gene

No Data Available

Interacting Proteins for NBPF18P Gene

Gene Ontology (GO) - Biological Process for NBPF18P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NBPF18P Gene

Transcripts for NBPF18P Gene

mRNA/cDNA for NBPF18P Gene

(3) Selected AceView cDNA sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NBPF18P Gene

No ASD Table

Relevant External Links for NBPF18P Gene

GeneLoc Exon Structure for
NBPF18P
ECgene alternative splicing isoforms for
NBPF18P

Expression for NBPF18P Gene

mRNA expression in normal human tissues for NBPF18P Gene

mRNA differential expression in normal tissues according to GTEx for NBPF18P Gene

This gene is overexpressed in Testis (x38.9).

NURSA nuclear receptor signaling pathways regulating expression of NBPF18P Gene:

NBPF18P
genes like me logo Genes that share expression patterns with NBPF18P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for NBPF18P Gene

Orthologs for NBPF18P Gene

No data available for Orthologs and Evolution for NBPF18P Gene

Paralogs for NBPF18P Gene

No data available for Paralogs for NBPF18P Gene

Variants for NBPF18P Gene

Sequence variations from dbSNP and Humsavar for NBPF18P Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs112005072 -- 152,017,361(+) CTCAC(A/G)TCAAA intron-variant, upstream-variant-2KB
rs112049255 -- 152,016,606(+) CTTCC(C/T)GTGAC intron-variant, upstream-variant-2KB
rs112684990 -- 152,018,298(+) GCAAA(G/T)CCTGG intron-variant, nc-transcript-variant
rs113300669 -- 152,017,585(+) ACAAA(A/G)TAGTA intron-variant, upstream-variant-2KB
rs113351429 -- 152,016,556(+) CTCTG(A/G)AAGGG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for NBPF18P Gene

Variant ID Type Subtype PubMed ID
nsv1007097 CNV gain 25217958
nsv946389 CNV duplication 23825009

Relevant External Links for NBPF18P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NBPF18P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NBPF18P Gene

Disorders for NBPF18P Gene

MalaCards: The human disease database

(1) MalaCards diseases for NBPF18P Gene - From: GeneCards

Disorder Aliases PubMed IDs
neuroblastoma
  • neuroblastoma 1
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for NBPF18P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NBPF18P
genes like me logo Genes that share disorders with NBPF18P: view

No data available for UniProtKB/Swiss-Prot and Genatlas for NBPF18P Gene

Publications for NBPF18P Gene

  1. A novel gene family NBPF: intricate structure generated by gene duplications during primate evolution. (PMID: 16079250) Vandepoele K. … van Roy F. (Mol. Biol. Evol. 2005) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for NBPF18P Gene

Sources for NBPF18P Gene

Content
Loading form....