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Aliases for NBAT1 Gene

Subcategory (RNA class) for NBAT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NBAT1 Gene

  • Neuroblastoma Associated Transcript 1 2 3 5
  • Cancer Susceptibility Candidate 14 (Non-Protein Coding) 2 3
  • Neuroblastoma Associated Transcript-1 2
  • NBAT-1 3
  • CASC14 3

External Ids for NBAT1 Gene

Previous HGNC Symbols for NBAT1 Gene

  • CASC14

Summaries for NBAT1 Gene

GeneCards Summary for NBAT1 Gene

NBAT1 (Neuroblastoma Associated Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with NBAT1 include Neuroblastoma.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NBAT1 Gene

Genomics for NBAT1 Gene

Regulatory Elements for NBAT1 Gene

Enhancers for NBAT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G022145 1.8 VISTA Ensembl ENCODE dbSUPER 7 -1.0 -1028 6.3 PKNOX1 FOXA2 ARID4B SIN3A RAD21 RFX5 ZNF335 GATA2 SCRT2 FOS NBAT1 ENSG00000219404
GH06G022140 1.4 Ensembl ENCODE dbSUPER 6.6 +5.0 5006 3.9 ELF3 FOXA2 NFIB ARID4B THRB RARA FOS MIXL1 MXD4 MIER2 NBAT1 PIR35992
GH06G022070 1.5 FANTOM5 Ensembl ENCODE dbSUPER 5.6 +75.1 75118 4.1 ZNF175 CEBPG RAD21 EED TRIM24 ZNF584 PRDM10 ZNF174 YY2 CEBPB RN7SKP240 NBAT1 GC06P021990
GH06G022062 1.3 Ensembl ENCODE dbSUPER 5.7 +83.8 83786 2.8 PKNOX1 TBL1XR1 WRNIP1 RELB ETV6 IKZF2 CREM CBFB USF2 JUNB NBAT1 RN7SKP240 GC06P021990
GH06G022112 1 Ensembl ENCODE 6.5 +34.0 33969 2.2 JUN RAD21 GATA2 FOSL2 FOS MAFK NFE2L2 TCF7L2 HLF BHLHE40 NBAT1 PIR35992
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NBAT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for NBAT1 Gene

Chromosome:
6
Start:
22,134,602 bp from pter
End:
22,147,193 bp from pter
Size:
12,592 bases
Orientation:
Minus strand

Genomic View for NBAT1 Gene

Genes around NBAT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NBAT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NBAT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NBAT1 Gene

Proteins for NBAT1 Gene

Post-translational modifications for NBAT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NBAT1 Gene

Domains & Families for NBAT1 Gene

Gene Families for NBAT1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with NBAT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NBAT1 Gene

Function for NBAT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NBAT1 Gene

Localization for NBAT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NBAT1 Gene

Pathways & Interactions for NBAT1 Gene

SuperPathways for NBAT1 Gene

No Data Available

Interacting Proteins for NBAT1 Gene

Gene Ontology (GO) - Biological Process for NBAT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NBAT1 Gene

Drugs & Compounds for NBAT1 Gene

No Compound Related Data Available

Transcripts for NBAT1 Gene

mRNA/cDNA for NBAT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NBAT1 Gene

No ASD Table

Relevant External Links for NBAT1 Gene

GeneLoc Exon Structure for
NBAT1
ECgene alternative splicing isoforms for
NBAT1

Expression for NBAT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NBAT1 Gene

NURSA nuclear receptor signaling pathways regulating expression of NBAT1 Gene:

NBAT1
genes like me logo Genes that share expression patterns with NBAT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NBAT1 Gene

Orthologs for NBAT1 Gene

Evolution for NBAT1 Gene

ENSEMBL:
Gene Tree for NBAT1 (if available)
TreeFam:
Gene Tree for NBAT1 (if available)

No data available for Orthologs for NBAT1 Gene

Paralogs for NBAT1 Gene

No data available for Paralogs for NBAT1 Gene

Variants for NBAT1 Gene

Sequence variations from dbSNP and Humsavar for NBAT1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000150088 -- 22,142,382(+) GTAAG(A/T)GTATT intron-variant
rs1000198385 -- 22,145,511(+) GCTCT(C/T)ACCCT intron-variant
rs1000517239 -- 22,146,342(+) TGGCA(C/T)TCATG intron-variant
rs1000601921 -- 22,134,201(+) TGATA(C/T)CATAT intron-variant
rs1000667932 -- 22,140,307(+) GAAAC(C/T)GTATG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NBAT1 Gene

Variant ID Type Subtype PubMed ID
nsv830602 CNV gain 17160897

Relevant External Links for NBAT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NBAT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NBAT1 Gene

Disorders for NBAT1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for NBAT1 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
neuroblastoma
  • neuroblastoma 1
- elite association - COSMIC cancer census association via MalaCards
Search NBAT1 in MalaCards View complete list of genes associated with diseases

Relevant External Links for NBAT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NBAT1
genes like me logo Genes that share disorders with NBAT1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for NBAT1 Gene

Publications for NBAT1 Gene

  1. Fighting Neuroblastomas with NBAT1. (PMID: 25859549) Pandey G.K. … Kanduri C. (Oncoscience 2015) 2 3 64
  2. NBAT1 suppresses breast cancer metastasis by regulating DKK1 via PRC2. (PMID: 26378045) Hu P. … Su S. (Oncotarget 2015) 2 3 64
  3. The risk-associated long noncoding RNA NBAT-1 controls neuroblastoma progression by regulating cell proliferation and neuronal differentiation. (PMID: 25517750) Pandey G.K. … Kanduri C. (Cancer Cell 2014) 3 64
  4. Common variation at 6q16 within HACE1 and LIN28B influences susceptibility to neuroblastoma. (PMID: 22941191) Diskin S.J. … Maris J.M. (Nat. Genet. 2012) 3 64
  5. Integrative genomics identifies LMO1 as a neuroblastoma oncogene. (PMID: 21124317) Wang K. … Maris J.M. (Nature 2011) 3 64

Products for NBAT1 Gene

Sources for NBAT1 Gene

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