Free for academic non-profit institutions. Other users need a Commercial license

NAV2-AS5 Gene(RNA Gene)

NAV2 Antisense RNA 5

GCID:
GC11M019502
GIFtS:
14
Genes Participants
UDN Logo

Aliases for NAV2-AS5 Gene

Subcategory (RNA class) for NAV2-AS5 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NAV2-AS5 Gene

  • NAV2 Antisense RNA 5 2 3 5
  • NAV2 Antisense RNA 5 (Non-Protein Coding) 2

External Ids for NAV2-AS5 Gene

Previous GeneCards Identifiers for NAV2-AS5 Gene

  • GC00U933090
  • GC11M019525

Summaries for NAV2-AS5 Gene

GeneCards Summary for NAV2-AS5 Gene

NAV2-AS5 (NAV2 Antisense RNA 5) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for NAV2-AS5 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NAV2-AS5 Gene

Genomics for NAV2-AS5 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for NAV2-AS5 Gene

Promoters and enhancers for NAV2-AS5 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11I019508 Enhancer 0.9 ENCODE 550.8 -1.1 -1080 0.2 ELF3 FOXA2 THRB RAD21 RARA RFX5 YY1 SMARCC2 RCOR1 FOS NAV2-AS5 ENSG00000207407 NAV2-AS4 NAV2
GH11I019365 Enhancer 0.9 Ensembl ENCODE 10.2 +138.5 138526 5.6 JUN MAX EBF1 YY1 CTBP1 GATA3 POLR2A FOS EZH2 HLF NAV2 NAV2-AS5 NAV2-IT1 GC11P019352 GC11P019350
GH11I019475 Enhancer 0.6 ENCODE 11.1 +31.9 31910 0.2 SRF JUNB DPF2 BATF ATF2 RAD21 SP1 GLIS1 IKZF1 HNF4A NAV2-AS5 NAV2-AS4 GC11M019401 RNA5SP335 NAV2
GH11I019395 Enhancer 0.4 ENCODE 11 +112.0 111990 0.1 MAX POU5F1 REST NAV2-AS5 NAV2 NAV2-AS4 HTATIP2 GC11M019401 RNA5SP335 NAV2-IT1
GH11I019441 Enhancer 1.5 Ensembl ENCODE dbSUPER 0.2 +65.0 65032 1.7 PKNOX1 SMAD1 ARNT IRF4 ZNF766 CBX5 ZNF143 ZNF207 FOS ZNF263 SPTY2D1 ENSG00000256361 TSG101 RNA5SP335 GC11M019401 NAV2-AS5 NAV2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around NAV2-AS5 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NAV2-AS5 Gene

Genomic Locations for NAV2-AS5 Gene
chr11:19,502,672-19,507,229
(GRCh38/hg38)
Size:
4,558 bases
Orientation:
Minus strand
chr11:19,524,219-19,528,776
(GRCh37/hg19)

Genomic View for NAV2-AS5 Gene

Genes around NAV2-AS5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NAV2-AS5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NAV2-AS5 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for NAV2-AS5 Gene

Proteins for NAV2-AS5 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for NAV2-AS5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NAV2-AS5 Gene

Domains & Families for NAV2-AS5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NAV2-AS5 Gene

Function for NAV2-AS5 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NAV2-AS5 Gene

Localization for NAV2-AS5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NAV2-AS5 Gene

Pathways & Interactions for NAV2-AS5 Gene

SuperPathways for NAV2-AS5 Gene

PathCards logo More details on SuperPathways for NAV2-AS5
No Data Available

Interacting Proteins for NAV2-AS5 Gene

Gene Ontology (GO) - Biological Process for NAV2-AS5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NAV2-AS5 Gene

Drugs & Compounds for NAV2-AS5 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for NAV2-AS5 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for NAV2-AS5 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NAV2-AS5 Gene

NAV2 antisense RNA 5:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for NAV2-AS5 Gene

No ASD Table

Relevant External Links for NAV2-AS5 Gene

GeneLoc Exon Structure for
NAV2-AS5
ECgene alternative splicing isoforms for
NAV2-AS5

Expression for NAV2-AS5 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NAV2-AS5 Gene

mRNA expression in normal human tissues for NAV2-AS5 Gene
mRNA expression by GTEx for NAV2-AS5 Gene

mRNA differential expression in normal tissues according to GTEx for NAV2-AS5 Gene

This gene is overexpressed in Testis (x28.0).

SOURCE GeneReport for Unigene cluster for NAV2-AS5 Gene:

Hs.434602
genes like me logo Genes that share expression patterns with NAV2-AS5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NAV2-AS5 Gene

Orthologs for NAV2-AS5 Gene

Evolution for NAV2-AS5 Gene

ENSEMBL:
Gene Tree for NAV2-AS5 (if available)
TreeFam:
Gene Tree for NAV2-AS5 (if available)

No data available for Orthologs for NAV2-AS5 Gene

Paralogs for NAV2-AS5 Gene

No data available for Paralogs for NAV2-AS5 Gene

Variants for NAV2-AS5 Gene

Sequence variations from dbSNP and Humsavar for NAV2-AS5 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1001049141 -- 19,508,172(-) T/A upstream_transcript_variant
rs1001523970 -- 19,506,386(-) G/A non_coding_transcript_variant
rs1001592714 -- 19,503,465(-) G/A/T non_coding_transcript_variant
rs1001666427 -- 19,507,314(-) A/C upstream_transcript_variant
rs1002594170 -- 19,504,764(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for NAV2-AS5 Gene

Variant ID Type Subtype PubMed ID
esv3891939 CNV gain 25118596

Additional Variant Information for NAV2-AS5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NAV2-AS5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NAV2-AS5 Gene

Disorders for NAV2-AS5 Gene

Additional Disease Information for NAV2-AS5

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for NAV2-AS5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NAV2-AS5 Gene

Publications for NAV2-AS5 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for NAV2-AS5 Gene

Sources for NAV2-AS5 Gene

Content
Loading form....