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NAV2-AS5 Gene(RNA Gene)

NAV2 Antisense RNA 5

GCID:
GC11M019502
GIFtS:
20
Genes Participants
UDN Logo

Aliases for NAV2-AS5 Gene

Subcategory (RNA class) for NAV2-AS5 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NAV2-AS5 Gene

  • NAV2 Antisense RNA 5 2 3 5
  • NAV2 Antisense RNA 5 (Non-Protein Coding) 2

External Ids for NAV2-AS5 Gene

Previous GeneCards Identifiers for NAV2-AS5 Gene

  • GC00U933090
  • GC11M019525

Summaries for NAV2-AS5 Gene

GeneCards Summary for NAV2-AS5 Gene

NAV2-AS5 (NAV2 Antisense RNA 5) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NAV2-AS5 Gene

Genomics for NAV2-AS5 Gene

Products:

  1. Regulatory Element

Regulatory Elements for NAV2-AS5 Gene

Enhancers for NAV2-AS5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G019365 1.1 Ensembl ENCODE 10.2 +138.5 138526 5.6 PKNOX1 TAF1 JUN MAX EBF1 ZIC2 RAD21 YY1 GATA3 CTBP1 NAV2 NAV2-AS5 NAV2-IT1 GC11P019350 GC11P019352
GH11G019475 0.7 ENCODE 11.1 +31.9 31911 0.2 MTA2 WRNIP1 JUNB DPF2 RAD21 SP1 GLIS1 EED IKZF1 HNF4A NAV2-AS5 NAV2-AS4 GC11M019401 RNA5SP335
GH11G019395 0.5 ENCODE 10.9 +112.0 111991 0.1 TEAD4 MAX POU5F1 KDM1A REST NAV2-AS5 NAV2 NAV2-AS4 HTATIP2 GC11M019401 RNA5SP335 NAV2-IT1
GH11G019508 0.9 ENCODE 0.7 -1.1 -1080 0.2 ELF3 FOXA2 THRB RAD21 RARA RFX5 YY1 SMARCC2 RCOR1 FOS LOC105376579 ENSG00000207407 NAV2-AS5 NAV2-AS4
GH11G019520 0.8 ENCODE 0.4 -12.9 -12900 0.2 ARNT NFIB FEZF1 ZIC2 ZNF324 ZNF664 CTBP1 ZNF366 ZBTB48 GLI2 NAV2-AS4 NAV2-AS5
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NAV2-AS5 on UCSC Golden Path with GeneCards custom track

Genomic Location for NAV2-AS5 Gene

Chromosome:
11
Start:
19,502,672 bp from pter
End:
19,507,229 bp from pter
Size:
4,558 bases
Orientation:
Minus strand

Genomic View for NAV2-AS5 Gene

Genes around NAV2-AS5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NAV2-AS5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NAV2-AS5 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for NAV2-AS5 Gene

Proteins for NAV2-AS5 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for NAV2-AS5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NAV2-AS5 Gene

Domains & Families for NAV2-AS5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NAV2-AS5 Gene

Function for NAV2-AS5 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NAV2-AS5 Gene

Localization for NAV2-AS5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NAV2-AS5 Gene

Pathways & Interactions for NAV2-AS5 Gene

SuperPathways for NAV2-AS5 Gene

PathCards logo More details on SuperPathways for NAV2-AS5
No Data Available

Interacting Proteins for NAV2-AS5 Gene

Gene Ontology (GO) - Biological Process for NAV2-AS5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NAV2-AS5 Gene

Drugs & Compounds for NAV2-AS5 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for NAV2-AS5 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for NAV2-AS5 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NAV2-AS5 Gene

NAV2 antisense RNA 5:
Representative Sequences:

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for NAV2-AS5 Gene

No ASD Table

Relevant External Links for NAV2-AS5 Gene

GeneLoc Exon Structure for
NAV2-AS5
ECgene alternative splicing isoforms for
NAV2-AS5

Expression for NAV2-AS5 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NAV2-AS5 Gene

mRNA expression in normal human tissues for NAV2-AS5 Gene
mRNA expression by GTEx for NAV2-AS5 Gene

mRNA differential expression in normal tissues according to GTEx for NAV2-AS5 Gene

This gene is overexpressed in Testis (x28.0).

SOURCE GeneReport for Unigene cluster for NAV2-AS5 Gene:

Hs.434602
genes like me logo Genes that share expression patterns with NAV2-AS5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NAV2-AS5 Gene

Orthologs for NAV2-AS5 Gene

Evolution for NAV2-AS5 Gene

ENSEMBL:
Gene Tree for NAV2-AS5 (if available)
TreeFam:
Gene Tree for NAV2-AS5 (if available)

No data available for Orthologs for NAV2-AS5 Gene

Paralogs for NAV2-AS5 Gene

No data available for Paralogs for NAV2-AS5 Gene

Variants for NAV2-AS5 Gene

Sequence variations from dbSNP and Humsavar for NAV2-AS5 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1001049141 -- 19,508,172(+) TGCTC(A/T)GTCTC intron-variant, upstream-variant-2KB
rs1001523970 -- 19,506,386(+) AGAAT(A/G)TTCTG intron-variant, nc-transcript-variant
rs1001592714 -- 19,503,465(+) CTCCC(A/G/T)CCTTC intron-variant, nc-transcript-variant
rs1001666427 -- 19,507,314(+) CCCCC(A/C)AAGAA intron-variant, upstream-variant-2KB
rs1002594170 -- 19,504,764(+) AGAGA(C/T)AGCCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NAV2-AS5 Gene

Variant ID Type Subtype PubMed ID
esv3891939 CNV gain 25118596

Relevant External Links for NAV2-AS5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NAV2-AS5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NAV2-AS5 Gene

Disorders for NAV2-AS5 Gene

Relevant External Links for NAV2-AS5

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NAV2-AS5

No disorders were found for NAV2-AS5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NAV2-AS5 Gene

Publications for NAV2-AS5 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for NAV2-AS5 Gene

Sources for NAV2-AS5 Gene

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