Free for academic non-profit institutions. Other users need a Commercial license

Aliases for NAV2-AS4 Gene

Subcategory (RNA class) for NAV2-AS4 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NAV2-AS4 Gene

  • NAV2 Antisense RNA 4 2 3 5
  • NAV2 Antisense RNA 4 (Non-Protein Coding) 2

External Ids for NAV2-AS4 Gene

Previous GeneCards Identifiers for NAV2-AS4 Gene

  • GC11M019533

Summaries for NAV2-AS4 Gene

GeneCards Summary for NAV2-AS4 Gene

NAV2-AS4 (NAV2 Antisense RNA 4) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NAV2-AS4 Gene

Genomics for NAV2-AS4 Gene

Regulatory Elements for NAV2-AS4 Gene

Enhancers for NAV2-AS4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F019389 1.1 ENCODE 10.4 +134.0 134000 1.9 PKNOX1 ZIC2 RAD21 NR2F2 YY1 GATA3 ATF3 CEBPA HNF4G ZBTB33 NAV2-AS4 HTATIP2 NAV2-IT1 GC11M019401 RNA5SP335
GH11F019475 0.2 ENCODE 10.3 +48.8 48760 0.2 MTA2 WRNIP1 JUNB RAD21 SP1 EED IKZF1 GLIS1 CREM NAV2-AS5 NAV2-AS4 GC11M019401 RNA5SP335
GH11F019561 0.2 ENCODE 10.2 -37.2 -37171 0.2 JUN NR2F2 NAV2-AS4 MIR4486 GC11M019543
GH11F019560 0.2 ENCODE 10.2 -36.5 -36482 0.6 NAV2-AS4 GC11M019543 MIR4486
GH11F019563 0.9 Ensembl ENCODE 10 -40.3 -40297 1.4 CTCF ZNF654 MAZ REST ZNF2 RAD21 SMARCA4 ZNF341 PATZ1 SMC3 ENSG00000207407 NAV2-AS4 MIR4486 GC11M019543
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around NAV2-AS4 on UCSC Golden Path with GeneCards custom track

Genomic Location for NAV2-AS4 Gene

Chromosome:
11
Start:
19,510,890 bp from pter
End:
19,524,078 bp from pter
Size:
13,189 bases
Orientation:
Minus strand

Genomic View for NAV2-AS4 Gene

Genes around NAV2-AS4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NAV2-AS4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NAV2-AS4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NAV2-AS4 Gene

Proteins for NAV2-AS4 Gene

Post-translational modifications for NAV2-AS4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NAV2-AS4 Gene

Domains & Families for NAV2-AS4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NAV2-AS4 Gene

Function for NAV2-AS4 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NAV2-AS4 Gene

Localization for NAV2-AS4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NAV2-AS4 Gene

Pathways & Interactions for NAV2-AS4 Gene

SuperPathways for NAV2-AS4 Gene

No Data Available

Interacting Proteins for NAV2-AS4 Gene

Gene Ontology (GO) - Biological Process for NAV2-AS4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NAV2-AS4 Gene

Transcripts for NAV2-AS4 Gene

mRNA/cDNA for NAV2-AS4 Gene

(2) Additional mRNA sequences :
(8) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NAV2-AS4 Gene

NAV2 antisense RNA 4:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NAV2-AS4 Gene

No ASD Table

Relevant External Links for NAV2-AS4 Gene

GeneLoc Exon Structure for
NAV2-AS4
ECgene alternative splicing isoforms for
NAV2-AS4

Expression for NAV2-AS4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NAV2-AS4 Gene

mRNA differential expression in normal tissues according to GTEx for NAV2-AS4 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x4.5), Testis (x4.1), and Liver (x4.0).

SOURCE GeneReport for Unigene cluster for NAV2-AS4 Gene:

Hs.132600
genes like me logo Genes that share expression patterns with NAV2-AS4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for NAV2-AS4 Gene

Orthologs for NAV2-AS4 Gene

Evolution for NAV2-AS4 Gene

ENSEMBL:
Gene Tree for NAV2-AS4 (if available)
TreeFam:
Gene Tree for NAV2-AS4 (if available)

No data available for Orthologs for NAV2-AS4 Gene

Paralogs for NAV2-AS4 Gene

No data available for Paralogs for NAV2-AS4 Gene

Variants for NAV2-AS4 Gene

Sequence variations from dbSNP and Humsavar for NAV2-AS4 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs10500850 -- 19,513,446(+) CATTG(C/T)GCATC intron-variant
rs1055543 -- 19,510,959(-) GCTGT(A/G)TGCAA intron-variant, nc-transcript-variant
rs11025163 -- 19,514,998(+) CTTTG(G/T)AAAGT intron-variant
rs11025164 -- 19,518,933(+) tagag(C/T)tccct intron-variant
rs11025165 -- 19,520,388(+) ATGCC(C/T)TGCCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NAV2-AS4 Gene

Variant ID Type Subtype PubMed ID
esv2676711 CNV deletion 23128226
esv3625537 CNV loss 21293372
esv3891939 CNV gain 25118596

Relevant External Links for NAV2-AS4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NAV2-AS4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NAV2-AS4 Gene

Disorders for NAV2-AS4 Gene

Relevant External Links for NAV2-AS4

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NAV2-AS4

No disorders were found for NAV2-AS4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NAV2-AS4 Gene

Publications for NAV2-AS4 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for NAV2-AS4 Gene

Sources for NAV2-AS4 Gene

Content
Loading form....