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Aliases & Descriptions for NAV2
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases EC 3.6.1.- 3 FLJ10633 1 , 2 FLJ11030 1 , 2 FLJ23707 1 , 2 FLJ77876 2 HELAD1 1 , 2 , 3 KIAA1419 1 , 2 , 3 , 5 POMFIL2 1 , 2 , 3 RAINB1 1 , 2 , 3 , 5 STEERIN2 2 , 3 Steerin-2 3 UNC53H2 2 unc53H2 3
Descriptions Helicase APC down-regulated 1 3 Pore membrane and/or filament-interacting-like protein 2 3 Retinoic acid inducible in neuroblastoma 1 3 Unc-53 homolog 2 3 helicase, APC down-regulated 1 2 neuron navigator 2 2 pore membrane and/or filament interacting like protein 2 2 retinoic acid inducible gene in neuroblastoma 1 2
Search outside databases for aliases for NAV2 genePrevious GC identifers: GC11P020896 GC11P020678 GC11P019411 GC11P019699
Summaries for NAV2 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for NAV2 : The vitamin A metabolite, all-trans retinoic acid (atRA), plays an important role in neuronaldevelopment, including neurite outgrowth. RAINB1 is an atRA-responsive gene.[supplied by OMIM] UniProtKB/Swiss-Prot: NAV2_HUMAN, Q8IVL1 Function : Possesses 3' to 5' helicase activity and exonuclease activity. Involved in neuronaldevelopment, specifically in the development of different sensory organs
Gene Wiki entry for NAV2
Genomic Location for NAV2
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the NAV2 gene Entrez Gene cytogenetic band: 11p15.1 Ensembl cytogenetic band: 11p15.1 HGNC cytogenetic band: 11p15.1 NAV2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure
GeneLoc location for GC11P019691:
(about GC identifiers )
Start:
19,691,457 bp from pter
End:
20,099,723 bp from pter
Size:
408,267 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000011.8 NT_009237.17 Proteins for NAV2
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: NAV2_HUMAN, Q8IVL1 (See
protein sequence )Recommended Name: Neuron navigator 2 Size : 2488 amino acids; 268133 Da
Subcellular location : Nucleus
Developmental stage : Highly expressed in the nervous system of developing embryos. Also expressedin fetal heart, liver and kidney
Caution : PubMed:15158073 experiments have been carried out in mouse
Sequence caution : Sequence=BAB85038.1; Type=Frameshift; Positions=2074;
PDB structures from and Proteopedia : 2YRN (3D)
 
Secondary accessions : Q8IVK3 Q8IVK4 Q8IVK5 Q8IVK6 Q8IVK7 Q8IVK8 Q8NHC9 Q8NHD0 Q8TDE9 Q8TDF0 Q8TEB3Q96B30 Q9NUZ6 Q9NVM7 Q9P2C8 Alternative splicing : 13 isoforms : Q8IVL1-1 Q8IVL1-2 Q8IVL1-3 Q8IVL1-4 Q8IVL1-5 Q8IVL1-6 Q8IVL1-7 Q8IVL1-8 Q8IVL1-9 Q8IVL1-10 Q8IVL1-11 Q8IVL1-12 Q8IVL1-13 (Additional isoforms may exist)
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (4 alternative transcripts):
NP_001104488.1 NP_001104489.1 NP_660093.2 NP_892009.3 ENSEMBL proteins: ENSP00000312169 ENSP00000379394 ENSP00000379396 ENSP00000353871 ENSP00000309577 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 1 Gene Ontology (GO) cellular component term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005634 nucleus
IEA --
About this table Antibodies for NAV2: Assays for NAV2:
Protein
Domains/ Families for NAV2(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q8IVL1 ProtoNet protein and cluster: Q8IVL1
1 Blocks protein family : IPB001715 Calponin-like actin-binding UniProtKB/Swiss-Prot: NAV2_HUMAN, Q8IVL1 Similarity : Belongs to the Nav/unc-53 familySimilarity : Contains 1 CH (calponin-homology) domain
Gene Function for NAV2
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_145117 Applied Biosystems Silencer ® siRNAs for NAV2 Sigma-Aldrich siRNA for NAV2 Sigma-Aldrich shRNA Panels and shRNA for NAV2 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 4 ): NM_001111018                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 4 ): NM_001111018                                  untagged cDNA clones in CMV expression vector (see all 5 ): NM_001111018  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_182964 UniProtKB/Swiss-Prot: NAV2_HUMAN, Q8IVL1 Function : Possesses 3' to 5' helicase activity and exonuclease activity. Involved in neuronaldevelopment, specifically in the development of different sensory organs Induction : By all-trans retinoic acid (atRA). Up-regulated in colorectal carcinomasEnzyme Number (IUBMB): EC 3.6.1.-
7 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Nav2) :4 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for NAV2
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Drugs & Compounds for NAV2 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for NAV2
Transcripts for NAV2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_145117 Sigma-Aldrich siRNA for NAV2 Sigma-Aldrich shRNA Panels and shRNA for NAV2 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001111018 NM_001111019 NM_145117 NM_182964
REFSEQ mRNAs for NAV2 gene (4 alternative transcripts): NM_001111018.1 NM_001111019.1 NM_145117.4 NM_182964.5
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001111018 NM_001111019 NM_145117 NM_182964
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 4 ): NM_001111018                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 4 ): NM_001111018                                  untagged cDNA clones in CMV expression vector (see all 5 ): NM_001111018  
Additional cDNA sequence: AJ488202.1
21 DOTS entries : DT.100785395 DT.406815 DT.445168 DT.100699961 DT.100693170 DT.100785398 DT.100023051 DT.100640016 DT.92058282 DT.100721645 DT.421264 DT.100693167 DT.117695 DT.120702225 DT.95273461 DT.120702063 DT.120702137 DT.40239601 DT.91711310 DT.91894626 DT.97823709
24/47 AceView cDNA sequences (see all 47
):AI739417 AJ488205 AJ488208 M79074 AA984260 BM800972 BX485661 BM714992 AA150056 BX502578 BQ431205 AA152178 AL699569 BG763937 BX502564 AA037745 BM676695 CD654605 BU739339 BG924941 BF511334 CD691701 BF511191 T24445
highest scoring ESTs for NAV2 :AA708740 AI971541 AA011020 AA042824 AA042992 AA115015 AA150056 AA256661 AA451836 AA493555
Unigene Clusters for NAV2: Neuron navigator 2 Hs.502116 [show with all ESTs ] , Hs.551898 [show with all ESTs ] , Hs.639427 , Hs.639428 Unigene Representative Sequences: NM_182964 , BG924941 , AJ488204 , AJ488202 GeneLoc Exon Structure 5/8 Alternative Splicing Database (ASD) splice patterns (SP) for NAV2 (see all 8
) ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21 ^ 22 ^ 23 ^ 24 ^ 25a · SP1 :                                                   -   SP2 :   -   -                                                 SP3 :                                                     SP4 :                                                     SP5 :     -                                                
ExUns: 25b ^ 26 ^ 27a · 27b ^ 28a · 28b SP1 :     -         SP2 :             SP3 :             SP4 :     -         SP5 :            
About this scheme ECgene alternative splicing isoforms for NAV2 5 Ensembl transcripts including schematic representations : ENST00000311043
ENST00000396085
ENST00000396087
ENST00000360655
ENST00000349880
Expression for NAV2
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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NAV2 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for NAV2 1 / 2 / 3
11 probe-sets matching NAV2 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene clusters: Hs.502116 Hs.551898 Hs.639427 Hs.639428 UniProtKB/Swiss-Prot: NAV2_HUMAN, Q8IVL1 Tissue specificity : Highly expressed in the brain, kidney and liver. Also expressed in the thyroid,mammary gland, spinal cord, heart, placenta and lung. Abundantly expressed in colon cancers
Orthologs for NAV2
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for NAV2 gene from 5/11 species (see all 11
)
About this table Species with no ortholog for NAV2 ENSEMBL Gene Tree for NAV2 Paralogs for NAV2 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for NAV2 gene NAV1 2 NAV3 2
SNPs/Variants for NAV2 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for NAV2 (up to first 250kb)
Disorders & Mutations for NAV2
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 607026 Human Gene Mutation Database : NAV2
Medical News for NAV2 (Possibly Related Articles in
Doctor's Guide )
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Publications for NAV2 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/20 PubMed articles for NAV2 gene (see all 20
): Neuron navigator: a human gene family with homology to unc-53, a cell guidance gene from Caenorhabditis elegans. (PubMed id 12079279) 2, 3, 4 Maes T.... Buesa C. (2002) Pore membrane and/or filament interacting like protein 1 (POMFIL1) is predominantly expressed in the nervous system and encodes different protein isoforms. (PubMed id 12062803) 2, 3, 4 Coy J.F....Poustka A. (2002) A mammalian homolog of unc-53 is regulated by all-trans retinoic acid in neuroblastoma cells and embryos. (PubMed id 11904404) 1, 3, 4 Merrill R.A.... Clagett-Dame M. (2002) A probability-based approach for high-throughput protein phosphorylation analysis and site localization. (PubMed id 16964243) 3, 4 Beausoleil S.A.... Gygi S.P. (2006) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 3, 4 Olsen J.V....Mann M. (2006) Sensory deficits in mice hypomorphic for a mammalian homologue of unc-53. (PubMed id 15158073) 3, 4 Peeters P.J.... Moechars D.W.E. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 3, 4 Ota T....Sugano S. (2004) Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones. (PubMed id 12168954) 3, 4 Nakajima D.... Nagase T. (2002) Isolation of HELAD1, a novel human helicase gene up-regulated in colorectal carcinomas. (PubMed id 12214280) 3, 4 Ishiguro H.... Furukawa Y. (2002)
Search for NAV2
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Genome Databases showing NAV2
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing NAV2
(According to HUGE )
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Specialized Databases showing NAV2 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for NAV2 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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