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Aliases & Descriptions for NAV1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| DKFZp781D0314 1, 2 | | FLJ12560 1, 2 | | FLJ14203 1, 2 | | KIAA1151 1, 2, 3, 5 | | KIAA1213 3 | | MGC14961 1, 2 | | POMFIL3 1, 2, 3, 5 | | STEERIN1 3 | | Steerin-1 3 | | steerin-1 1, 2 | | unc53H1 3 |
| | | Descriptions |
|---|
| Pore membrane and/or filament-interacting-like protein 3 3 | | Unc-53 homolog 1 3 | | neuron navigator 1 2 | | neuron navigator-1 2 | | pore membrane and/or filament interacting like protein 3 2 |
|
| | Search outside databases for aliases for NAV1 genePrevious GC identifers: GC01P199392 GC01P197115 GC01P198083 GC01P198905 GC01P198349 |
Summaries for NAV1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for NAV1: This gene belongs to the neuron navigator family and is expressed predominantly in the nervous system. The encoded protein contains coiled-coil domains and a conserved AAA domain characteristic for ATPases associated with a variety of cellular activities. This gene is similar to unc-53, a Caenorhabditis elegans gene involved in axon guidance. The exact function of this gene is not known. [provided by RefSeq] UniProtKB/Swiss-Prot: NAV1_HUMAN, Q8NEY1Function: May be involved in neuronal migration (By similarity)Gene Wiki entry for NAV1 |
Genomic Location for NAV1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the NAV1 gene 
Entrez Gene cytogenetic band: 1q32.3 Ensembl cytogenetic band: 1q32.1 HGNC cytogenetic band: 1q32.3NAV1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure GeneLoc location for GC01P199859:
(about GC identifiers)
Start:
|
199,859,224 bp from pter |
End:
|
200,062,720 bp from pter |
Size:
|
203,497 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000001.9 NT_004487.18
| Proteins for NAV1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: NAV1_HUMAN, Q8NEY1 (See
protein sequence)Recommended Name: Neuron navigator 1 Size: 1877 amino acids; 202472 Da
Subunit: Interacts with tubulin (By similarity)
Subcellular location: Cytoplasm, cytoskeleton (By similarity). Note=Associates with a subset of microtubule plus ends. Enriched in neuronal growth cones (By similarity)
Developmental stage: Expressed in fetal brain and heart
Sequence caution: Sequence=CAH71925.1; Type=Erroneous gene model prediction; Sequence=CAI17010.1; Type=Erroneous gene model prediction;
Secondary accessions: Q5SVH1 Q5SVH2 Q5SVH3 Q5SVH7 Q5VUY9 Q8IVL2 Q96II1 Q9H7V9 Q9H9S9 Q9H9T5 Q9UGI1 Q9ULK7 Q9ULR9Alternative splicing: 7 isoforms: Q8NEY1-1 Q8NEY1-2 Q8NEY1-3 Q8NEY1-4 Q8NEY1-5 Q8NEY1-6 Q8NEY1-7 Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_065176.2
ENSEMBL proteins: ENSP00000356271 ENSP00000356269 ENSP00000356265 ENSP00000295624 ENSP00000356264 ENSP00000356266 ENSP00000375828 ENSP00000356270
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for NAV1: Assays for NAV1: | Protein
Domains/ Families for NAV1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q8NEY1
ProtoNet protein and cluster: Q8NEY1 1 Blocks protein family: IPB008162 Inorganic pyrophosphatase
UniProtKB/Swiss-Prot: NAV1_HUMAN, Q8NEY1Similarity: Belongs to the Nav/unc-53 family | Gene Function for NAV1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_020443
Applied Biosystems Silencer® siRNAs for NAV1
Sigma-Aldrich siRNA for NAV1  Sigma-Aldrich shRNA for NAV1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_020443                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_020443                                  untagged cDNA clones in CMV expression vector (see all 2): AK056158 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_020443
UniProtKB/Swiss-Prot: NAV1_HUMAN, Q8NEY1Function: May be involved in neuronal migration (By similarity)2 Gene Ontology (GO) molecular function terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0000166 | nucleotide binding |
IEA | -- | | GO:0017111 | nucleoside-triphosphatase activity |
IEA | -- | About this table | Pathways & Interactions for NAV1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/7 Interacting proteins for NAV1 (ENSP000003562703) via UniProtKB, MINT, and/or STRING (see all 7
)About this table
3 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0007275 | multicellular organismal development |
IEA | -- | | GO:0007399 | nervous system development |
IEA | -- | | GO:0030154 | cell differentiation |
IEA | -- | About this table
|
Drugs & Compounds for NAV1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for NAV1
|
Transcripts for NAV1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_020443
Sigma-Aldrich siRNA for NAV1  Sigma-Aldrich shRNA for NAV1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_020443 REFSEQ mRNAs for NAV1 gene: NM_020443.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_020443               OriGene GFP tagged cDNA clone in CMV expression vector: NM_020443                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_020443                                  untagged cDNA clones in CMV expression vector (see all 2): AK056158  Additional cDNA sequence: AB032977.3 AB033039.1 AF086348.1 AJ488101.1 AK022622.1 AK022631.1 AK024265.1 AK056158.1 AK091567.1 AL133664.1 AY043013.1 BC007523.1 BC069250.1 BC117683.1 BX648460.1 CR936811.1 21 DOTS entries: DT.95311045 DT.95143036 DT.100017088 DT.205340 DT.101983412 DT.121338801 DT.95343066 DT.95131868 DT.100794609 DT.91826624 DT.95086544 DT.87046235 DT.91710046 DT.121338860 DT.75169939 DT.91954325 DT.86841911 DT.95311047 DT.40112361 DT.75110211 DT.97824207 24/293 AceView cDNA sequences (see all 293
):T16632 F03942 BM549511 BG118553 AI379115 BP344765 Z44991 AA564854 BQ185652 BM558821 AI272296 AK091567 AA043878 BU742933 BM052858 BU742921 BE326555 BC069250 AI937060 AA233277 Z41591 CB159133 AK056158 BU731888
highest scoring ESTs for NAV1:AA128296 AI003520 AI858038 Z78399 AA011315 AA043878 AA043997 AA128315 AA232974 AA233277 Unigene Cluster for NAV1: Neuron navigator 1 Hs.585374 [show with all ESTs]Unigene Representative Sequence: NM_020443
GeneLoc Exon Structure
5/7 Alternative Splicing Database (ASD) splice patterns (SP) for NAV1 (see all 7
)
| ExUns: | 1 | ^ | 2a | · | 2b | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6a | · | 6b | ^ | 7a | · | 7b | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 | ^ | 14 | ^ | 15 | ^ | 16 | ^ | 17a | · | 17b | ^ | 18 | ^ | 19 | ^ | 20a | · | 20b | ^ | 21 | ^ | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
| ExUns: | 22 | ^ | 23 | |
| SP1: | |   | |   | |
| SP2: | |   | |   | |
| SP3: | |   | |   | |
| SP4: | |   | |   | |
| SP5: | |   | |   |
About this scheme
ECgene alternative splicing isoforms for NAV1
8 Ensembl transcripts including schematic representations: ENST00000367302
ENST00000367300
ENST00000367296
ENST00000295624
ENST00000367295
ENST00000367297
ENST00000391966
ENST00000367301
|
Expression for NAV1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| NAV1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for NAV1
1 / 2 / 3 19 probe-sets matching NAV1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TCTCCTCCCA
SOURCE GeneReport for Unigene cluster: Hs.585374 UniProtKB/Swiss-Prot: NAV1_HUMAN, Q8NEY1Tissue specificity: Broadly expressed at low levels. Expressed at high levels in heart, skeletal muscle and placenta |
Orthologs for NAV1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for NAV1 gene from 3 species
About this table Species with no ortholog for NAV1
ENSEMBL Gene Tree for NAV1 | Paralogs for NAV1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for NAV1 gene
- NAV32 NAV22
|
SNPs/Variants for NAV1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for NAV1 (up to first 250kb)
|
Disorders & Mutations for NAV1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 611628
1 PharmGKB disease relationship for NAV1 geneAbout this table
|
Medical News for NAV1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for NAV1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/14 PubMed articles for NAV1 gene (see all 14
):- Neuron navigator: a human gene family with homology to unc-53, a cell guidance gene from Caenorhabditis elegans. (PubMed id 12079279)2, 3, 4 Maes T.... Buesa C. (2002)
- Pore membrane and/or filament interacting like protein 1 (POMFIL1) is predominantly expressed in the nervous system and encodes different protein isoforms. (PubMed id 12062803)2, 3, 4 Coy J.F....Poustka A. (2002)
- Sensory deficits in mice hypomorphic for a mammalian homologue of unc-53. (PubMed id 15158073)3, 4 Peeters P.J.... Moechars D.W.E. (2004)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)3, 4 Ota T....Sugano S. (2004)
- Characterization of cDNA clones selected by the GeneMark analysis from size-fractionated cDNA libraries from human brain. (PubMed id 10574461)3, 4 Hirosawa M....Ohara O. (1999)
- A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648)4 Dephoure N.... Gygi S.P. (2008)
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)3 Kimura K.... Sugano S. (2006)
- The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)4 Gregory S.G.... Bentley D.R. (2006)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)4 Gerhard D.S....Malek J. (2004)
- Classification of pediatric acute lymphoblastic leukemia by gene expression profiling. (PubMed id 12730115)7 Ross M.E....Downing J.R. (2003)
|
Search for NAV1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing NAV1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing NAV1
(According to HUGE)
About This Section
| |
Specialized Databases showing NAV1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for NAV1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for NAV1:

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GeneCards Homepage - Last full update: 1 Jul 2009
Incremental update: 13 Oct 2009
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