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NARFL Gene

protein-coding GIFtS: 51

GC16M000722

nuclear prelamin A recognition factor-like
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
About This Section

Aliases
FLJ21988 ^¹, ²
HPRN ^¹, ²
IOP1 ^¹, ², ³, ⁵
LET1L ^²
PRN ^¹, ², ³

Descriptions
Iron-only hydrogenase-like protein 1 ^³
LET1 like/JFP15 ^²
Protein related to Narf ^², ³
nuclear prelamin A recognition factor-like ^²

External Ids
HGNC: 14179¹
Entrez Gene: 64428²
UniProtKB: Q9H6Q4³
Ensembl: ENSG00000103245⁷

Search outside databases for aliases for NARFL gene

Previous GC identifers: GC16U990170 GC16M000720 GC16M000721

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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UniProtKB/Swiss-Prot: NARFL_HUMAN, Q9H6Q4

Function: Regulates HIF1A expression

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the NARFL gene

Entrez Gene cytogenetic band: 16p13.3 Ensembl cytogenetic band: 16p13.3 HGNC cytogenetic band: 16p13.3

NARFL Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 16 GeneLoc Exon Structure

GeneLoc location for GC16M000722: (about GC identifiers)

Start:	719,768 bp from pter
End:	730,998 bp from pter
Size:	11,231 bases
Orientation:	minus strand

RefSeq DNA sequence:

NC_000016.8 NT_037887.4

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: NARFL_HUMAN, Q9H6Q4 (See protein sequence)

Recommended Name: Nuclear prelamin A recognition factor-like protein

Size: 476 amino acids; 53020 Da

Subcellular location: Nucleus (By similarity)

Sequence caution: Sequence=AAK61251.1; Type=Erroneous gene model prediction;

Secondary accessions: A1L385 Q53GC6 Q96S10 Q9H6J8

Alternative splicing: 3 isoforms: Q9H6Q4-1 Q9H6Q4-2 Q9H6Q4-3

Post-translational modifications:

View phosphorylation sites using PhosphoSite²

REFSEQ proteins: NP_071938.1

ENSEMBL proteins:

ENSP00000301694 ENSP00000251588

Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
	Browse Purified and Recombinant Proteins at Millipore
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	Browse R&D Systems for human recombinant proteins
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	Browse Abcam for Recombinant Proteins
	Human Recombinant Proteins from Abnova (NARFL)

OriGene Purified Recombinant Human Protein: NARFL

1 Gene Ontology (GO) cellular component term (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005634	nucleus	IEA	--

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Antibodies for NARFL:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Browse Antibodies at Sigma-Aldrich
	Browse R&D Systems for Antibodies
	Search for antibodies at Abcam and the World's Antibody Gateway (free search engine of over 150 antibody companies)
	Browse Abnova for Monoclonal and Polyclonal Antibodies
	Search Novus for antibodies for NARFL

Assays for NARFL:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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Graphical View of Domain Structure for InterPro Entry Q9H6Q4

ProtoNet protein and cluster: Q9H6Q4

1 Blocks protein family: IPB004108 Hydrogenase large subunit

UniProtKB/Swiss-Prot: NARFL_HUMAN, Q9H6Q4

Similarity: Belongs to the NARF family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (NARFL)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_022493

Applied Biosystems Silencer® siRNAs for NARFL

Sigma-Aldrich siRNA for NARFL

Sigma-Aldrich shRNA for NARFL

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Invitrogen Clones for NARFL
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_022493
Myc/DDK tagged cDNA clone in CMV expression vector: NM_022493
untagged cDNA clones in CMV expression vector (see all 2): NM_022493

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_022493

UniProtKB/Swiss-Prot: NARFL_HUMAN, Q9H6Q4

Function: Regulates HIF1A expression

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Gene Network Central^TM Interacting Genes and Proteins Network for NARFL

5/15 Interacting proteins for NARFL (ENSP00000301694³) via UniProtKB, MINT, and/or STRING (see all 15 )

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
WWOX	ENSP00000333406³	STRING (score=.75)
PHEX	ENSP00000368682³	STRING (score=.748)
PRPF40B	ENSP00000369634³	STRING (score=.746)
ADH5	ENSP00000296412³	STRING (score=.744)
PPRC1	ENSP00000278070³	STRING (score=.744)

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4 Gene Ontology (GO) biological process terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0001666	response to hypoxia	IDA	16956324
GO:0032364	oxygen homeostasis	IDA	16956324
GO:0043433	negative regulation of transcription factor activity	IDA	16956324
GO:0045449	regulation of transcription	IDA	16956324

About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for NARFL

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (NARFL)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_022493

Sigma-Aldrich siRNA for NARFL

Sigma-Aldrich shRNA for NARFL

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_022493

REFSEQ mRNAs for NARFL gene:

NM_022493.1

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_022493

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_022493
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_022493
                                 untagged cDNA clones in CMV expression vector (see all 2): NM_022493

Additional cDNA sequence:

AK025641.1 AK025861.1 AK056467.1 AK094812.1 AK095675.1 AK126151.1 AK223005.1 AK293591.1

AK300087.1 AK301023.1 AK310875.1 AY129231.1 BC030248.1 BC129940.1 CR595518.1

19 DOTS entries:

DT.99963005 DT.97845252 DT.452434 DT.100652191 DT.101976868 DT.120675917 DT.95166941 DT.100786989

DT.100786988 DT.100804026 DT.120675943 DT.100832161 DT.91762176 DT.95166934 DT.100639095 DT.100786994

DT.120675945 DT.40284527 DT.86848777

24/137 AceView cDNA sequences (see all 137 ):

AI658913 AK095675 AA346989 BM545716 AW630745 AY129231 AA845844 BX401005

AW271336 CR595518 AK056467 BF000612 AW449760 AK025861 BF431438 AI218505

AK025641 CD722827 NM_022493 BX388203 AW468335 BC030248 AI084452 AA377853

highest scoring ESTs for NARFL:

AI750884 AI911780 AK025641 AK056467 AL538846 AL556743 AW630745 AY129231 BC030248 BF967526

Unigene Cluster for NARFL:

Nuclear prelamin A recognition factor-like

Hs.513247 [show with all ESTs]

Unigene Representative Sequence: AK056467

GeneLoc Exon Structure

5/10 Alternative Splicing Database (ASD) splice patterns (SP) for NARFL (see all 10 )

ExUns:	1a	·	1b	·	1c	^	2a	·	2b	·	2c	^	3a	·	3b	^	4a	·	4b	·	4c	·	4d	^	5a	·	5b	^	6a	·	6b	^	7	^	8	^	9	^	10a	·	10b
SP1:									-		-		-				-		-				-
SP2:																	-		-				-								-
SP3:									-		-		-		-		-		-				-		-		-
SP4:											-		-		-		-		-				-
SP5:

About this scheme

ECgene alternative splicing isoforms for NARFL

2 Ensembl transcripts including schematic representations:

ENST00000301694 ENST00000251588

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

NARFL expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for NARFL

¹ / ² / ³

3 probe-sets matching NARFL gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
49499_at²^{, 3}	U95-B	1	1.00	1.00	1.00	1.00	AI911780	0.80	1.00	0.91	1
218742_at²^{, 3}	U133-A	1	1.00	1.00	--	--	NM_022493	0.60	1.00	0.82	1
218742_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

About this table

Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: CCCCAAGACC

SOURCE GeneReport for Unigene cluster: Hs.513247
UniProtKB/Swiss-Prot: NARFL_HUMAN, Q9H6Q4
Tissue specificity: Widely expressed

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for NARFL gene from 5/14 species (see all 14 )

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
dog (Canis familiaris)	NARFL¹	--	nuclear prelamin A recognition factor-like	83.82(n) 86.13(a)	490086 XM_547207.2 XP_547207.2
chimpanzee (Pan troglodytes)	NARFL¹	--	nuclear prelamin A recognition factor-like	99.3(n) 99.58(a)	453805 XM_510719.2 XP_510719.2
cow (Bos taurus)	NARFL¹	--	nuclear prelamin A recognition factor-like	84.87(n) 85.71(a)	511837 XM_589255.3 XP_589255.2
rat (Rattus norvegicus)	Narfl¹	--	nuclear prelamin A recognition factor-like	83.68(n) 86.13(a)	360496 NM_001013183.1 NP_001013201.1
mouse (Mus musculus)	Narfl^{1, 5}	17⁵	nuclear prelamin A recognition factor-like^{1, 5}	83.26(n)¹ 87.39(a)¹	67563¹ NM_026238.3¹ NP_080514.2¹ AI504405⁵ AI835007⁵ (see all 15)

About this table Species with no ortholog for NARFL

ENSEMBL Gene Tree for NARFL

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for NARFL gene

NARF²

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/71 NCBI SNPs in NARFL are shown (see all 71 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 53)

AB	SNP ID	Valid	Chr 16 pos	Sequence	Recs	AA Chg	Type	More	Recs	Allele freq	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--				--
	rs11648796^1,2	A,C,F,H	732191(+)	`CATGTG/ATATCT`	1	--	ng3¹		3		EU EA	298
	rs7205337^1,2	A,C,F,H	720340(+)	`GGGGGG/AAGCCC`	1	--	ut3¹ ese³		8		EU EA WA	838
--	rs4984689^1,2	A,C,H	732035(+)	`TGCCAC/TTGCAT`	1	--	ng3¹		4		EU EA WA	414
	rs8045850^1,2	C,F	729694(+)	`GGCCAC/TGCCAC`	1	V/M	mis¹ ese³		5		NA EU EA WA	498
	rs7188554^1,2	C,F	720518(+)	`GCCAGT/CGTGTG`	1	R/H	mis¹ ese³		1		NA	78
--	rs4984922^1,2	A,C	732039(+)	`attgcA/Gtccgg`	1	--	ng3¹		0	--	--	--	--
	rs3829492^1,2	A,C,F	721634(+)	`AACACG/ATGCTC`	1	H/H	syn¹ ese³		1		NA	76
	rs9928077^1,2	A,C,F	724766(+)	`GGCAGC/TGCCTG`	1	A/A	syn¹		1		NA	78
	rs34851515^1,2	F	720511(-)	`TGGCTG/ACAGGG`	1	L/L	syn¹		1		NA	78
	rs35987447^1,2	F	727268(-)	`TGCAGC/TGGCTG`	1	S/S	syn¹		1		NA	76

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HapMap Linkage Disequilibrium images for NARFL (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 611118

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
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10/16 PubMed articles for NARFL gene (see all 16 ):

IOP1, a novel hydrogenase-like protein that modulates hypoxia- inducible factor-1alpha activity. (PubMed id 16956324)^{2, 3, 4} Huang J....Lee F.S. (2007)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)^{3, 4} Ota T....Sugano S. (2004)
Sequence, structure and pathology of the fully annotated terminal 2 Mb of the short arm of human chromosome 16. (PubMed id 11157797)^{3, 4} Daniels R.J....Higgs D.R. (2001)
A role for IOP1 in mammalian cytosolic iron-sulfur protein biogenesis. (PubMed id 18270200)³ Song D. and Lee F.S. (2008)
The sequence and analysis of duplication-rich human chromosome 16. (PubMed id 15616553)⁴ Martin J.... Pennacchio L.A. (2004)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)⁴ Gerhard D.S....Malek J. (2004)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)³ Strausberg R.L....Marra M.A. (2002)
Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id )⁴ Aoki H.... Hino O. (2000)
Construction and characterization of a full length-enriched and a 5'- end-enriched cDNA library. (PubMed id 9373149)³ Suzuki Y.... Sugano S. (1997)
Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. (PubMed id 8125298)³ Maruyama K. and Sugano S. (1994)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 64428	HGNC: 14179	AceView: NARFL	Ensembl:ENSG00000103245	euGenes: HUgn64428
ECgene: NARFL	H-InvDB: NARFL

(According to HUGE)
About This Section

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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Licensable Technologies for NARFL
(Available from WIS Yeda, Salk, Tufts)

About This Section

(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
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Products for NARFL:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for NARFL-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for NARFL		Browse antibodies at Sigma-Aldrich
	Explore super-pooled esiRNAs		Browse proteins at Sigma-Aldrich
	Lentivirus-delivered shRNAs for NARFL		Browse small molecules at Sigma-Aldrich
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	Multiplex/Array Assay Kits & Reagents		ELISpot Kits & Development Modules
	Recombinant & Natural Proteins

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NARFL Gene

protein-coding GIFtS: 51

Aliases &
Descriptions
for NARFL

Summaries
for NARFL

Genomic Location
for NARFL

Proteins
for NARFL

Protein Domains/
Families
for NARFL

Gene Function
for NARFL

Pathways & Interactions
for NARFL

Drugs & Compounds
for NARFL

Transcripts
for NARFL

Expression
for NARFL

Orthologs
for NARFL

Paralogs
for NARFL

SNPs/Variants
for NARFL

Disorders & Mutations
for NARFL

Medical News
for NARFL

Publications
for NARFL

Search for NARFL

Genome Databases showing NARFL

Other Databases showing NARFL

Specialized Databases showing NARFL

Licensable Technologies
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Services
for NARFL

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

NARFL Gene

protein-coding GIFtS: 51

Aliases & Descriptionsfor NARFL

Summariesfor NARFL

Genomic Locationfor NARFL

Proteinsfor NARFL

Protein Domains/Familiesfor NARFL

Gene Functionfor NARFL

Pathways & Interactionsfor NARFL

Drugs & Compoundsfor NARFL

Transcriptsfor NARFL

Expression for NARFL

Orthologsfor NARFL

Paralogsfor NARFL

SNPs/Variantsfor NARFL

Disorders & Mutationsfor NARFL

Medical Newsfor NARFL

Publicationsfor NARFL

Search for NARFL

Genome Databases showing NARFL

Other Databases showing NARFL

Specialized Databases showing NARFL

Licensable Technologiesfor NARFL

Servicesfor NARFL

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for NARFL

Summaries
for NARFL

Genomic Location
for NARFL

Proteins
for NARFL

Protein Domains/
Families
for NARFL

Gene Function
for NARFL

Pathways & Interactions
for NARFL

Drugs & Compounds
for NARFL

Transcripts
for NARFL

Expression
for NARFL

Orthologs
for NARFL

Paralogs
for NARFL

SNPs/Variants
for NARFL

Disorders & Mutations
for NARFL

Medical News
for NARFL

Publications
for NARFL

Licensable Technologies
for NARFL

Services
for NARFL