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Aliases for NAPA-AS1 Gene

Subcategory (RNA class) for NAPA-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NAPA-AS1 Gene

  • NAPA Antisense RNA 1 2 3 5
  • NAPA Antisense RNA 1 (Non-Protein Coding) 2

External Ids for NAPA-AS1 Gene

Previous GeneCards Identifiers for NAPA-AS1 Gene

  • GC19P047989

Summaries for NAPA-AS1 Gene

GeneCards Summary for NAPA-AS1 Gene

NAPA-AS1 (NAPA Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NAPA-AS1 Gene

Genomics for NAPA-AS1 Gene

Regulatory Elements for NAPA-AS1 Gene

Enhancers for NAPA-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F047483 1.1 ENCODE 0.8 +0.4 386 2.4 HDGF ARNT CREB3L1 SIN3A DMAP1 ZNF2 YY1 ZNF207 ZNF143 KLF13 EHD2 GRWD1 KDELR1 GLTSCR1 ENSG00000268746 ZC3H4 GLTSCR2-AS1 INAFM1 KPTN NAPA-AS1
GH19F047479 1 Ensembl ENCODE 0.8 -4.0 -4029 1.7 HDAC1 KLF1 PKNOX1 L3MBTL2 CEBPB YY1 SP1 CCNT2 MBD2 IRF1 NAPA-AS1 SLC8A2
GH19F047487 0.2 ENCODE 0.8 +2.1 2137 0.2 KPTN NAPA-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NAPA-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for NAPA-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000217228 18 1801 HDGF ARNT CREB3L1 SIN3A DMAP1 ZNF2 YY1 ZNF207 ZNF143 KLF13

Genomic Location for NAPA-AS1 Gene

Chromosome:
19
Start:
47,484,282 bp from pter
End:
47,501,597 bp from pter
Size:
17,316 bases
Orientation:
Plus strand

Genomic View for NAPA-AS1 Gene

Genes around NAPA-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NAPA-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NAPA-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NAPA-AS1 Gene

Proteins for NAPA-AS1 Gene

Post-translational modifications for NAPA-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NAPA-AS1 Gene

Domains & Families for NAPA-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NAPA-AS1 Gene

Function for NAPA-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NAPA-AS1 Gene

Localization for NAPA-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NAPA-AS1 Gene

Pathways & Interactions for NAPA-AS1 Gene

SuperPathways for NAPA-AS1 Gene

No Data Available

Interacting Proteins for NAPA-AS1 Gene

Gene Ontology (GO) - Biological Process for NAPA-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NAPA-AS1 Gene

Transcripts for NAPA-AS1 Gene

mRNA/cDNA for NAPA-AS1 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NAPA-AS1 Gene

NAPA antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NAPA-AS1 Gene

No ASD Table

Relevant External Links for NAPA-AS1 Gene

GeneLoc Exon Structure for
NAPA-AS1
ECgene alternative splicing isoforms for
NAPA-AS1

Expression for NAPA-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NAPA-AS1 Gene

SOURCE GeneReport for Unigene cluster for NAPA-AS1 Gene:

Hs.657320
genes like me logo Genes that share expression patterns with NAPA-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for NAPA-AS1 Gene

Orthologs for NAPA-AS1 Gene

Evolution for NAPA-AS1 Gene

ENSEMBL:
Gene Tree for NAPA-AS1 (if available)
TreeFam:
Gene Tree for NAPA-AS1 (if available)

No data available for Orthologs for NAPA-AS1 Gene

Paralogs for NAPA-AS1 Gene

No data available for Paralogs for NAPA-AS1 Gene

Variants for NAPA-AS1 Gene

Sequence variations from dbSNP and Humsavar for NAPA-AS1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs142867197 Uncertain significance 47,483,973(+) CTGGC(C/T)GGATT nc-transcript-variant, upstream-variant-2KB, reference, missense
rs10408883 -- 47,489,762(+) AATTT(C/T)TGCAA intron-variant, splice-acceptor-variant
rs10413780 -- 47,485,305(+) cagtt(G/T)agaga intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs10418003 -- 47,500,033(+) CTCTT(C/T)GGGAG intron-variant
rs10418255 -- 47,485,774(+) TGGAG(A/G)GTAGA intron-variant, nc-transcript-variant, upstream-variant-2KB, reference, synonymous-codon, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for NAPA-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv953591 CNV deletion 24416366
nsv579888 CNV gain 21841781
nsv428366 CNV loss 18775914
nsv138407 CNV deletion 16902084
nsv1116643 CNV deletion 24896259
nsv1056887 CNV gain 25217958
esv3556493 CNV deletion 23714750
esv3346749 CNV duplication 20981092
esv2758765 CNV loss 17122850
esv2718665 CNV deletion 23290073
esv2718664 CNV deletion 23290073
esv2131971 CNV deletion 18987734

Relevant External Links for NAPA-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NAPA-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NAPA-AS1 Gene

Disorders for NAPA-AS1 Gene

Relevant External Links for NAPA-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NAPA-AS1

No disorders were found for NAPA-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NAPA-AS1 Gene

Publications for NAPA-AS1 Gene

No publications were found for NAPA-AS1 Gene.

Products for NAPA-AS1 Gene

Sources for NAPA-AS1 Gene

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