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Aliases for NAP1L6 Gene

Aliases for NAP1L6 Gene

  • Nucleosome Assembly Protein 1-Like 6 2 3

External Ids for NAP1L6 Gene

Previous GeneCards Identifiers for NAP1L6 Gene

  • GC0XM072262
  • GC0XM072345
  • GC0XM065979

Summaries for NAP1L6 Gene

GeneCards Summary for NAP1L6 Gene

NAP1L6 (Nucleosome Assembly Protein 1-Like 6) is a Pseudogene. An important paralog of this gene is NAP1L4.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NAP1L6 Gene

Genomics for NAP1L6 Gene

Regulatory Elements for NAP1L6 Gene

Genomic Location for NAP1L6 Gene

Start:
73,126,037 bp from pter
End:
73,128,080 bp from pter
Size:
2,044 bases
Orientation:
Minus strand

Genomic View for NAP1L6 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NAP1L6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NAP1L6 Gene

Proteins for NAP1L6 Gene

  • Protein details for NAP1L6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NFF2-NP1L6_HUMAN
    Recommended name:
    Putative nucleosome assembly protein 1-like 6
    Protein Accession:
    A6NFF2
    Secondary Accessions:

    Protein attributes for NAP1L6 Gene

    Size:
    107 amino acids
    Molecular mass:
    12045 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NAP1L6 Gene

Proteomics data for NAP1L6 Gene at MOPED

Post-translational modifications for NAP1L6 Gene

No Post-translational modifications

Other Protein References for NAP1L6 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for NAP1L6 Gene

Domains for NAP1L6 Gene

Protein Domains for NAP1L6 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for NAP1L6 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A6NFF2

UniProtKB/Swiss-Prot:

NP1L6_HUMAN :
  • A6NFF2
Family:
  • Belongs to the nucleosome assembly protein (NAP) family.
genes like me logo Genes that share domains with NAP1L6: view

No data available for Gene Families for NAP1L6 Gene

Function for NAP1L6 Gene

Phenotypes for NAP1L6 Gene

GenomeRNAi human phenotypes for NAP1L6:
genes like me logo Genes that share phenotypes with NAP1L6: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for NAP1L6 Gene

Localization for NAP1L6 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NAP1L6 Gene COMPARTMENTS Subcellular localization image for NAP1L6 gene
Compartment Confidence
cytosol 2
nucleus 2
mitochondrion 1

Gene Ontology (GO) - Cellular Components for NAP1L6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with NAP1L6: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for NAP1L6 Gene

Pathways for NAP1L6 Gene

SuperPathways for NAP1L6 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NAP1L6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006334 nucleosome assembly IEA --
genes like me logo Genes that share ontologies with NAP1L6: view

No data available for Pathways by source for NAP1L6 Gene

Transcripts for NAP1L6 Gene

mRNA/cDNA for NAP1L6 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NAP1L6 Gene

Nucleosome assembly protein 1-like 6:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for NAP1L6

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for NAP1L6 Gene

No ASD Table

Relevant External Links for NAP1L6 Gene

GeneLoc Exon Structure for
NAP1L6
ECgene alternative splicing isoforms for
NAP1L6

Expression for NAP1L6 Gene

mRNA expression in normal human tissues for NAP1L6 Gene

mRNA differential expression in normal tissues according to GTEx for NAP1L6 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (7.8).

SOURCE GeneReport for Unigene cluster for NAP1L6 Gene Hs.617486

genes like me logo Genes that share expressions with NAP1L6: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for NAP1L6 Gene

Orthologs for NAP1L6 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for NAP1L6 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia NAP1L6 36
OneToOne
dog
(Canis familiaris)
Mammalia -- 36
  • 9 (a)
ManyToMany
-- 36
  • 9 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm4204 36
  • 13 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 12 (a)
ManyToMany
-- 36
  • 11 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 11 (a)
OneToMany
chicken
(Gallus gallus)
Aves -- 36
  • 11 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 11 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii nap1l1 36
  • 11 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta CG3708 36
  • 5 (a)
ManyToMany
CG5017 36
  • 6 (a)
ManyToMany
Nap1 36
  • 6 (a)
ManyToMany
worm
(Caenorhabditis elegans)
Secernentea nap-1 36
  • 9 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes NAP1 36
  • 5 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.925 36
  • 9 (a)
OneToMany
Species with no ortholog for NAP1L6:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for NAP1L6 Gene

ENSEMBL:
Gene Tree for NAP1L6 (if available)
TreeFam:
Gene Tree for NAP1L6 (if available)

Paralogs for NAP1L6 Gene

Paralogs for NAP1L6 Gene

Selected SIMAP similar genes for NAP1L6 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with NAP1L6: view

Variants for NAP1L6 Gene

Sequence variations from dbSNP and Humsavar for NAP1L6 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs4892591 -- 73,128,876(+) ATGAT(G/T)TATTC upstream-variant-2KB
rs7888671 -- 73,126,171(+) CATAC(A/G)TTGAG nc-transcript-variant
rs7888956 -- 73,126,407(+) CCTGG(C/G)AGTTT nc-transcript-variant
rs10482107 -- 73,125,916(+) CTAGC(A/G)GCTTC downstream-variant-500B
rs12835457 -- 73,128,243(+) CAGCT(C/T)CCAAA upstream-variant-2KB

Relevant External Links for NAP1L6 Gene

HapMap Linkage Disequilibrium report
NAP1L6
Locus Specific Mutation Databases (LSDB)
NAP1L6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for NAP1L6 Gene

Disorders for NAP1L6 Gene

No disorders were found for NAP1L6 Gene.

No data available for UniProtKB/Swiss-Prot for NAP1L6 Gene

Publications for NAP1L6 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 4

Products for NAP1L6 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate NAP1L6
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for NAP1L6
    • Block miRNA regulation of NAP1L6 using miScript Target Protectors

    Sources for NAP1L6 Gene

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