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NAP1L5 Gene

protein-coding   GIFtS: 50
GCID: GC04M089617

Nucleosome Assembly Protein 1-Like 5

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Nucleosome Assembly Protein 1-Like 51 2
DRLM2 3 5
Down-Regulated In Liver Malignancy2 3

External Ids:    HGNC: 199681   Entrez Gene: 2668122   Ensembl: ENSG000001774327   OMIM: 6122035   UniProtKB: Q96NT13   

Export aliases for NAP1L5 gene to outside databases

Previous GC identifers: GC04M090075 GC04M089974 GC04M089836 GC04M085368


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for NAP1L5 Gene:
NAP1L5 (nucleosome assembly protein 1-like 5) is a protein-coding gene.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000004.11  NC_018915.2  NT_016354.20  
Regulatory elements:
   Regulatory transcription factor binding sites in the NAP1L5 gene promoter:
         c-Fos   TBP   AP-1   JunB   FosB   Fra-1   Lmo2   POU2F1   POU2F1a   c-Jun   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidNAP1L5 promoter sequence
   Search Chromatin IP Primers for NAP1L5

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat NAP1L5


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4q22.1|4q21-q22   Ensembl cytogenetic band:  4q22.1   HGNC cytogenetic band: 4q21-q22

NAP1L5 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
NAP1L5 gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04M089617:  view genomic region     (about GC identifiers)

Start:
89,617,066 bp from pter      End:
89,619,386 bp from pter
Size:
2,321 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: NP1L5_HUMAN, Q96NT1 (See protein sequence)
Recommended Name: Nucleosome assembly protein 1-like 5  
Size: 182 amino acids; 19593 Da

Explore the universe of human proteins at neXtProt for NAP1L5: NX_Q96NT1

Explore proteomics data for NAP1L5 at MOPED

Post-translational modifications: 

  • Ubiquitination2 at Lys78
  • Modification sites at PhosphoSitePlus

  • See NAP1L5 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_715638.1  
    ENSEMBL proteins: 
     ENSP00000320488  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    1 InterPro protein domain:
     IPR002164 NAP_family

    Graphical View of Domain Structure for InterPro Entry Q96NT1

    ProtoNet protein and cluster: Q96NT1

    UniProtKB/Swiss-Prot: NP1L5_HUMAN, Q96NT1
    Similarity: Belongs to the nucleosome assembly protein (NAP) family


    Find genes that share domains with NAP1L5           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for NAP1L5

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    NP1L5_HUMAN, Q96NT1: Nucleus (Potential)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytosol3
    nucleus3
    extracellular1

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IEA--

    Find genes that share ontologies with NAP1L5           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for NAP1L5
    Interactions:

        Search GeneGlobe Interaction Network for NAP1L5

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    Selected Interacting proteins for NAP1L5 (Q96NT12, 3 ENSP000003204884) via UniProtKB, MINT, STRING, and/or I2D (see all 48)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    C7orf55-LUC7L2Q9Y3832, 3MINT-65244 I2D: score=5 
    LUC7L2Q9Y3832, 3MINT-65244 I2D: score=5 
    KIAA1377Q9P2H02, 3MINT-65243 I2D: score=5 
    MAGEH1Q9H2132, 3MINT-65242 I2D: score=5 
    PTNP212462, 3MINT-65239 I2D: score=5 
    About this table

    Gene Ontology (GO): 1 biological process term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006334nucleosome assembly IEA--

    Find genes that share ontologies with NAP1L5           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
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    Browse Tocris compounds for NAP1L5 (NP1L5)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for NAP1L5 gene: 
    NM_153757.2  

    Unigene Cluster for NAP1L5:

    Nucleosome assembly protein 1-like 5
    Hs.12554  [show with all ESTs]
    Unigene Representative Sequence: NM_153757
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000323061(uc003hrx.3)
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    Additional mRNA sequence: 

    AK054689.1 AL834329.1 BC022544.1 BC039416.1 BC104883.1 

    5 DOTS entries:

    DT.214207  DT.428686  DT.100774043  DT.121250597  DT.100722910 

    Selected AceView cDNA sequences (see all 88):

    Z42684 N21977 CB047189 AI040731 AA954245 BQ010322 CR591413 AW161560 
    AI090144 BQ771809 AI364276 CA393605 Z38846 AA772367 AI246169 AI431867 
    AI816263 AI816344 F10839 AA838733 AI744533 AI025400 AW160613 BX420490 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    NAP1L5 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TAGCTTTTAG
    NAP1L5 Expression
    About this image


    NAP1L5 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 4) fully expand
     
     Neurons
             Mature Horizontal Cells Inner Nuclear Layer
     
     Eye (Sensory Organs)    fully expand to see all 2 entries
             Mature Horizontal Cells Inner Nuclear Layer
     
     Ovary (Reproductive System)
             Mature follicles
     
     Bone (Muscoskeletal System)
             Zeugopod Epiphyseal End
    NAP1L5 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    NAP1L5 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.12554

    UniProtKB/Swiss-Prot: NP1L5_HUMAN, Q96NT1
    Tissue specificity: Predominantly expressed in brain

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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of human and mouse.

    Orthologs for NAP1L5 gene from Selected species (see all 5)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Nap1l51 , 5 nucleosome assembly protein 1-like 51, 5 79.34(n)1
    84.3(a)1
      6 (27.90 cM)5
    582431  NM_021432.21  NP_067407.11 
     589052345 


    ENSEMBL Gene Tree for NAP1L5 (if available)
    TreeFam Gene Tree for NAP1L5 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for NAP1L5 gene
    4 SIMAP similar genes for NAP1L5 using alignment to 1 protein entry:     NP1L5_HUMAN:
    DKFZp434K0835    NAP1L4    NAP1L3    NAP1L2

    Find genes that share paralogs with NAP1L5           About GenesLikeMe


    1 Pseudogenes.org Pseudogene for NAP1L5
    PGOHUM00000238271


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    5 SNPs for NAP1L5    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 4 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1158862141,2
    F--89429499(+) CGTGCT/GTTCAC 1 -- us2k11Minor allele frequency- G:0.03WA 118
    rs26042091,2
    C,F,A,H--89429527(+) taagcA/Gctgta 1 -- us2k130Minor allele frequency- G:0.36NS EA NA WA CSA 3196
    rs801727931,2
    F--89429545(+) AGATAT/GAGAAC 1 -- us2k11Minor allele frequency- G:0.03WA 118
    rs1859401891,2
    --89429551(+) AGAACA/GGTAAA 1 -- us2k10--------
    rs131094421,2,4
    ----see VAR_0502272 mis40--------

    HapMap Linkage Disequilibrium report for NAP1L5 (89617066 - 89619386 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 1 variation for NAP1L5:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv461576CNV Gain19166990

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing NAP1L5
    DNA2.0 Custom Variant and Variant Library Synthesis for NAP1L5

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 612203    OMIM disorders: --


    Find genes that share disorders with NAP1L5           About GenesLikeMe

    Genetic Association Database (GAD): NAP1L5
    Human Genome Epidemiology (HuGE) Navigator: NAP1L5 (1 document)

    Export disorders for NAP1L5 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for NAP1L5 gene, integrated from 10 sources (see all 15):
    (articles sorted by number of sources associating them with NAP1L5)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Down-regulation of a novel gene, DRLM, in human liver malignancy from 4q22 that encodes a NAP-like protein. (PubMed id 12383514)1, 2, 3 Harada H.... Emi M. (Gene 2002)
    2. Large copy-number variations are enriched in cases with moderate to extreme obesity. (PubMed id 20622171)1, 4 Wang K....Price R.A. (Diabetes 2010)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    4. Bcl2-associated athanogene 3 interactome analysis reveals a new role in modulating proteasome activity. (PubMed id 23824909)1 Chen Y....Ge F. (amp 2013)
    5. A high-throughput approach for measuring temporal changes in the interactome. (PubMed id 22863883)1 Kristensen A.R....Foster L.J. (Nat. Methods 2012)
    6. Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass. (PubMed id 23000965)1 Povlsen L.K....Choudhary C. (Nat. Cell Biol. 2012)
    7. A human MAP kinase interactome. (PubMed id 20936779)1 Bandyopadhyay S....Ideker T. (Nat. Methods 2010)
    8. Expanding the substantial interactome of NEMO using protein microarrays. (PubMed id 20098747)1 Fenner B.J....Prehn J.H. (PLoS ONE 2010)
    9. A screen for retrotransposed imprinted genes reveals an association between X chromosome homology and maternal germ-line methylation. (PubMed id 17291163)1 Wood A.J....Oakey R.J. (PLoS Genet. 2007)
    10. Large-scale mapping of human protein-protein interactions by mass spectrometry. (PubMed id 17353931)1 Ewing R.M....Figeys D. (Mol. Syst. Biol. 2007)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 266812 HGNC: 19968 AceView: NAP1L5 Ensembl:ENSG00000177432 euGenes: HUgn266812
    ECgene: NAP1L5 H-InvDB: NAP1L5

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for NAP1L5 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for NAP1L5 Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for NAP1L5 gene:
    Search GeneIP for patents involving NAP1L5

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from genOway)
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