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Aliases & Descriptions for NAP1L1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases FLJ16112 2 MGC23410 1 , 2 MGC8688 1 , 2 NAP1 1 , 2 NAP1L 1 , 2 , 5 NRP 1 , 2 , 3 hNRP 3
Descriptions HSP22-like protein interacting protein 2 NAP-1 related protein 2 NAP-1-related protein 3 nucleosome assembly protein 1-like 1 2
Search outside databases for aliases for NAP1L1 genePrevious GC identifers: GC12M073514 GC12P075989 GC12M076156
Summaries for NAP1L1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for NAP1L1 : This gene encodes a member of the nucleosome assembly protein (NAP) family. This proteinparticipates in DNA replication and may play a role in modulating chromatin formation andcontribute to the regulation of cell proliferation. Alternative splicing of this gene results inseveral transcript variants; however, not all have been fully described. [provided by RefSeq] UniProtKB/Swiss-Prot: NP1L1_HUMAN, P55209 Function : May be involved in modulating chromatin formation and contribute to regulation of cellproliferation
Gene Wiki entry for NAP1L1
Genomic Location for NAP1L1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the NAP1L1 gene Entrez Gene cytogenetic band: 12q21.2 Ensembl cytogenetic band: 12q21.2 HGNC cytogenetic band: 12q21.1 NAP1L1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 12 GeneLoc Exon Structure
GeneLoc location for GC12M074726:
(about GC identifiers )
Start:
74,726,221 bp from pter
End:
74,764,717 bp from pter
Size:
38,497 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000012.10 NT_029419.11 Proteins for NAP1L1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: NP1L1_HUMAN, P55209 (See
protein sequence )Recommended Name: Nucleosome assembly protein 1-like 1 Size : 391 amino acids; 45374 Da
Subcellular location : Nucleus. Melanosome. Note=Identified by mass spectrometry in melanosomefractions from stage I to stage IV
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_004528.1 NP_631946.1 ENSEMBL proteins: ENSP00000261182 ENSP00000376947 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: NAP1L1 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for NAP1L1: Assays for NAP1L1:
Protein
Domains/ Families for NAP1L1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P55209 ProtoNet protein and cluster: P55209
1 Blocks protein family : IPB002164 Nucleosome assembly protein (NAP) UniProtKB/Swiss-Prot: NP1L1_HUMAN, P55209 Domain : The acidic domains are probably involved in the interaction with histonesSimilarity : Belongs to the nucleosome assembly protein (NAP) family
Gene Function for NAP1L1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
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RNAi Products ,
Clones , and
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siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_004537 Applied Biosystems Silencer ® siRNAs for NAP1L1 Sigma-Aldrich siRNA for NAP1L1 Sigma-Aldrich shRNA for NAP1L1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_004537                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_004537                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_004537  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_139207 UniProtKB/Swiss-Prot: NP1L1_HUMAN, P55209 Function : May be involved in modulating chromatin formation and contribute to regulation of cellproliferation
1 MGI phenotypic allele for Nap1l1 (no phenotypes)1 Gene Ontology (GO) molecular function term (links to tree view) :
About this table
Pathways & Interactions for NAP1L1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/27 Interacting proteins for NAP1L1 (ENSP00000261182 3 P55209 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 27
)About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for NAP1L1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
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Novoseek and Drugs according to
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PharmGKB )
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Transcripts for NAP1L1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_004537 Sigma-Aldrich siRNA for NAP1L1 Sigma-Aldrich shRNA for NAP1L1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_004537 NM_139207
REFSEQ mRNAs for NAP1L1 gene (2 alternative transcripts): NM_004537.4 NM_139207.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_004537 NM_139207
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_004537                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_004537                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_004537  
Additional cDNA sequence: AF088017.1
24/98 DOTS entries (see all 98
): DT.95370575 DT.86998877 DT.97868590 DT.100698900 DT.92325026 DT.121178617 DT.99953720 DT.75168697 DT.100698902 DT.95370610 DT.100698923 DT.100698892 DT.100698889 DT.100698906 DT.100045864 DT.40292868 DT.100698899 DT.95370818 DT.121178652 DT.121178656 DT.91748847 DT.91781259 DT.87009450 DT.121178681
24/1688 AceView cDNA sequences (see all 1688
):BQ009602 AA044935 BU608400 BM479891 AA805361 AA599720 BE675342 BQ884238 BF431151 CB215872 AA665466 BQ948185 BG110193 BX491540 CR620230 BQ637361 AI693385 BQ773669 BM680519 AA127585 BC018565 AA730326 BE328545 BM848615
highest scoring ESTs for NAP1L1 :M86667 AA053850 AA057684 AA071214 AA082229 AA083188 AA173360 AA223614 AA300484 AA311655
Unigene Clusters for NAP1L1: Nucleosome assembly protein 1-like 1 Hs.524599 [show with all ESTs ] , Hs.695185 [show with all ESTs ] Unigene Representative Sequences: NM_004537 , BG621980 GeneLoc Exon Structure 5/22 Alternative Splicing Database (ASD) splice patterns (SP) for NAP1L1 (see all 22
) ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3a · 3b · 3c ^ 4 ^ 5 ^ 6a · 6b ^ 7a · 7b · 7c ^ 8 ^ 9 ^ 10a · 10b ^ 11a · 11b · 11c · 11d · 11e ^ 12 ^ 13a · SP1 :                   -         -   -   -   -                     SP2 :         -           -         -   -   -   -                     SP3 :         -           -         -   -   -   -                     SP4 :         -           -           -   -   -                     SP5 :         -           -       -   -   -   -                      
ExUns: 13b ^ 14 ^ 15 ^ 16a · 16b ^ 17a · 17b ^ 18a · 18b · 18c ^ 19 SP1 :                       SP2 :                       SP3 :                       SP4 :                       SP5 :                      
About this scheme ECgene alternative splicing isoforms for NAP1L1 2 Ensembl transcripts including schematic representations : ENST00000261182
ENST00000393263
Expression for NAP1L1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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NAP1L1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for NAP1L1 1 / 2 / 3
23 probe-sets matching NAP1L1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene clusters: Hs.524599 Hs.695185 Expression variation in blood from EXPOLDB for NAP1L1
UniProtKB/Swiss-Prot: NP1L1_HUMAN, P55209 Tissue specificity : Ubiquitously expressed
Orthologs for NAP1L1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for NAP1L1 gene from 5/22 species (see all 22
)
About this table Species with no ortholog for NAP1L1 ENSEMBL Gene Tree for NAP1L1 Paralogs for NAP1L1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for NAP1L1 gene NAP1L6 2 NAP1L3 2 NAP1L2 2 NAP1L5 2 NAP1L4 2 Pseudogenes 4 related pseudogenes
SNPs/Variants for NAP1L1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for NAP1L1 (up to first 250kb)
Disorders & Mutations for NAP1L1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
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and/or TGDB .)
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OMIM: 164060 1 PharmGKB disease relationship for NAP1L1 gene About this table
Medical News for NAP1L1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for NAP1L1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/49 PubMed articles for NAP1L1 gene (see all 49
): Molecular characterization of hNRP, a cDNA encoding a human nucleosome-assembly-protein-I-related gene product involved in the induction of cell proliferation. (PubMed id 8297347) 2, 3, 4 Simon H.-U....Siminovitch K.A. (1994) A probability-based approach for high-throughput protein phosphorylation analysis and site localization. (PubMed id 16964243) 3, 4 Beausoleil S.A.... Gygi S.P. (2006) Proteomic and bioinformatic characterization of the biogenesis and function of melanosomes. (PubMed id 17081065) 3, 4 Chi A....Hunt D.F. (2006) Phosphoproteome analysis of the human mitotic spindle. (PubMed id 16565220) 3, 4 Nousiainen M.... Koerner R. (2006) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 3, 4 Olsen J.V....Mann M. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) A tagging-via-substrate technology for detection and proteomics of farnesylated proteins. (PubMed id 15308774) 3, 4 Kho Y.... Zhao Y. (2004) The nucleosome assembly activity of NAP1 is enhanced by Alien. (PubMed id 17339334) 1, 3 Eckey M....Baniahmad A. (2007) A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648) 4 Dephoure N.... Gygi S.P. (2008) Improved titanium dioxide enrichment of phosphopeptides from HeLa cells and high confident phosphopeptide identification by cross- validation of MS/MS and MS/MS/MS Spectra. (PubMed id 17924679) 4 Yu L.-R.... Veenstra T.D. (2007)
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Genome Databases showing NAP1L1
(According to
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Ensembl ,
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ECgene ,
and/or
H-InvDB )
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Specialized Databases showing NAP1L1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for NAP1L1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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