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Aliases for NANOGP3 Gene

Subcategory (RNA class) for NANOGP3 Gene

lncRNA

Aliases for NANOGP3 Gene

  • Nanog Homeobox Pseudogene 3 2 3 5

External Ids for NANOGP3 Gene

ORGUL Members for NANOGP3 Gene

Previous GeneCards Identifiers for NANOGP3 Gene

  • GC06M053284
  • GC06U900427
  • GC06M053391

Summaries for NANOGP3 Gene

GeneCards Summary for NANOGP3 Gene

NANOGP3 (Nanog Homeobox Pseudogene 3) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for NANOGP3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NANOGP3 Gene

Genomics for NANOGP3 Gene

GeneHancer (GH) Regulatory Elements for NANOGP3 Gene

Promoters and enhancers for NANOGP3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I053416 Enhancer 0.4 dbSUPER 550.8 +0.2 160 4 FOXA2 HNF4A NANOGP3 RN7SKP256
GH06I053432 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -14.3 -14294 1.8 PKNOX1 FOXA2 MLX ARID4B ETS1 YY1 FOS RXRA SP5 MXD4 RPL31P28 ELOVL5 NANOGP3 LOC105375095
GH06I053436 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -18.8 -18819 1.5 ATF1 FOXA2 RAD21 RFX5 YY1 CHAMP1 ZNF335 ARID2 ZNF143 SMARCC2 NANOGP3 LOC105375095
GH06I053460 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.3 -45.0 -44975 7.2 HDGF PKNOX1 FOXA2 SMAD1 NEUROD1 YY1 GTF3C2 ATF7 FOS RXRA LOC105375095 NANOGP3
GH06I053425 Enhancer 0.8 dbSUPER 0.4 -9.1 -9068 4.2 PKNOX1 BMI1 BATF KLF5 IRF4 ATF7 ETV6 IKZF2 RUNX3 RXRA NANOGP3 LOC105375095
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around NANOGP3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NANOGP3 Gene

Genomic Locations for NANOGP3 Gene
chr6:53,418,452-53,418,738
(GRCh38/hg38)
Size:
287 bases
Orientation:
Minus strand
chr6:53,283,250-53,283,954
(GRCh37/hg19)

Genomic View for NANOGP3 Gene

Genes around NANOGP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NANOGP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NANOGP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NANOGP3 Gene

Proteins for NANOGP3 Gene

Post-translational modifications for NANOGP3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NANOGP3 Gene

Domains & Families for NANOGP3 Gene

Gene Families for NANOGP3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with NANOGP3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NANOGP3 Gene

Function for NANOGP3 Gene

Phenotypes From GWAS Catalog for NANOGP3 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NANOGP3 Gene

Localization for NANOGP3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NANOGP3 Gene

Pathways & Interactions for NANOGP3 Gene

SuperPathways for NANOGP3 Gene

No Data Available

Interacting Proteins for NANOGP3 Gene

Gene Ontology (GO) - Biological Process for NANOGP3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NANOGP3 Gene

Drugs & Compounds for NANOGP3 Gene

No Compound Related Data Available

Transcripts for NANOGP3 Gene

mRNA/cDNA for NANOGP3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for NANOGP3 Gene

No ASD Table

Relevant External Links for NANOGP3 Gene

GeneLoc Exon Structure for
NANOGP3
ECgene alternative splicing isoforms for
NANOGP3

Expression for NANOGP3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NANOGP3 Gene

NURSA nuclear receptor signaling pathways regulating expression of NANOGP3 Gene:

NANOGP3
genes like me logo Genes that share expression patterns with NANOGP3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NANOGP3 Gene

Orthologs for NANOGP3 Gene

Evolution for NANOGP3 Gene

ENSEMBL:
Gene Tree for NANOGP3 (if available)
TreeFam:
Gene Tree for NANOGP3 (if available)

No data available for Orthologs for NANOGP3 Gene

Paralogs for NANOGP3 Gene

No data available for Paralogs for NANOGP3 Gene

Variants for NANOGP3 Gene

Additional Variant Information for NANOGP3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NANOGP3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NANOGP3 Gene

Disorders for NANOGP3 Gene

Additional Disease Information for NANOGP3

Genetic Association Database
(GAD)

No disorders were found for NANOGP3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NANOGP3 Gene

Publications for NANOGP3 Gene

  1. Eleven daughters of NANOG. (PMID: 15233988) Booth HA … Holland PW (Genomics 2004) 3 58

Products for NANOGP3 Gene

Sources for NANOGP3 Gene

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