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Aliases for NANOGP1 Gene

Aliases for NANOGP1 Gene

  • Nanog Homeobox Pseudogene 1 2 3
  • NANOG2 3 4
  • Nanog Homeobox 2 3

External Ids for NANOGP1 Gene

Summaries for NANOGP1 Gene

GeneCards Summary for NANOGP1 Gene

NANOGP1 (Nanog Homeobox Pseudogene 1) is a Pseudogene. GO annotations related to this gene include sequence-specific DNA binding transcription factor activity and sequence-specific DNA binding.

UniProtKB/Swiss-Prot for NANOGP1 Gene

  • Probable transcriptional regulator

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NANOGP1 Gene

Genomics for NANOGP1 Gene

Genomic Location for NANOGP1 Gene

Start:
7,876,275 bp from pter
End:
7,900,140 bp from pter
Size:
23,866 bases
Orientation:
Plus strand

Genomic View for NANOGP1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NANOGP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NANOGP1 Gene

No data available for Regulatory Elements for NANOGP1 Gene

Proteins for NANOGP1 Gene

  • Protein details for NANOGP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N7R0-NANG2_HUMAN
    Recommended name:
    Putative homeobox protein NANOG2
    Protein Accession:
    Q8N7R0
    Secondary Accessions:

    Protein attributes for NANOGP1 Gene

    Size:
    232 amino acids
    Molecular mass:
    26880 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NANOGP1 Gene

Proteomics data for NANOGP1 Gene at MOPED

Post-translational modifications for NANOGP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NANOGP1 Gene

Domains for NANOGP1 Gene

Gene Families for NANOGP1 Gene

HGNC:
  • NKL :Homeoboxes / ANTP class : NKL subclass

Protein Domains for NANOGP1 Gene

UniProtKB/Swiss-Prot:

NANG2_HUMAN
Domain:
  • Contains 1 homeobox DNA-binding domain.:
    • Q8N7R0
Family:
  • Belongs to the Nanog homeobox family.:
    • Q8N7R0
genes like me logo Genes that share domains with NANOGP1: view

Function for NANOGP1 Gene

Molecular function for NANOGP1 Gene

UniProtKB/Swiss-Prot Function: Probable transcriptional regulator

Gene Ontology (GO) - Molecular Function for NANOGP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0043565 sequence-specific DNA binding IEA --
genes like me logo Genes that share ontologies with NANOGP1: view

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for NANOGP1 Gene

Localization for NANOGP1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NANOGP1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NANOGP1 Gene COMPARTMENTS Subcellular localization image for NANOGP1 gene
Compartment Confidence
nucleus 3
cytosol 2

Gene Ontology (GO) - Cellular Components for NANOGP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with NANOGP1: view

Pathways for NANOGP1 Gene

SuperPathways for NANOGP1 Gene

No Data Available

Interacting Proteins for NANOGP1 Gene

Gene Ontology (GO) - Biological Process for NANOGP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with NANOGP1: view

No data available for Pathways by source for NANOGP1 Gene

Transcripts for NANOGP1 Gene

mRNA/cDNA for NANOGP1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NANOGP1 Gene

No ASD Table

Relevant External Links for NANOGP1 Gene

GeneLoc Exon Structure for
NANOGP1
ECgene alternative splicing isoforms for
NANOGP1

Expression for NANOGP1 Gene

mRNA expression in normal human tissues for NANOGP1 Gene

mRNA differential expression in normal tissues according to GTEx for NANOGP1 Gene

This gene is overexpressed in Testis (18.6), Pancreas (15.8), and Adrenal Gland (12.9).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for NANOGP1 Gene

genes like me logo Genes that share expressions with NANOGP1: view

Orthologs for NANOGP1 Gene

Evolution for NANOGP1 Gene

ENSEMBL:
Gene Tree for NANOGP1 (if available)
TreeFam:
Gene Tree for NANOGP1 (if available)

No data available for Orthologs for NANOGP1 Gene

Paralogs for NANOGP1 Gene

Selected SIMAP similar genes for NANOGP1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with NANOGP1: view

No data available for Paralogs for NANOGP1 Gene

Variants for NANOGP1 Gene

Relevant External Links for NANOGP1 Gene

HapMap Linkage Disequilibrium report
NANOGP1

No data available for Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for NANOGP1 Gene

Disorders for NANOGP1 Gene

No disorders were found for NANOGP1 Gene.

No data available for UniProtKB/Swiss-Prot for NANOGP1 Gene

Publications for NANOGP1 Gene

  1. Identification, cloning and expression analysis of the pluripotency promoting Nanog genes in mouse and human. (PMID: 15108323) Hart A.H. … Robb L. (Dev. Dyn. 2004) 2 3 4
  2. Eleven daughters of NANOG. (PMID: 15233988) Booth H.A. … Holland P.W. (Genomics 2004) 2 3 4
  3. Evolution of the NANOG pseudogene family in the human and chimpanzee genomes. (PMID: 16469101) Fairbanks D.J. … Maughan P.J. (BMC Evol. Biol. 2006) 3 4
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  5. Transcriptional properties of human NANOG1 and NANOG2 in acute leukemic cells. (PMID: 20427424) Eberle I. … Marschalek R. (Nucleic Acids Res. 2010) 3

Products for NANOGP1 Gene

Sources for NANOGP1 Gene

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