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Aliases for NANOGP1 Gene

Aliases for NANOGP1 Gene

  • Nanog Homeobox Pseudogene 1 2 3 5
  • NANOG2 3 4
  • Nanog-Like Protein 3
  • Nanog Homeobox 2 3

External Ids for NANOGP1 Gene

Previous GeneCards Identifiers for NANOGP1 Gene

  • GC12U900442
  • GC12P007917
  • GC12P008028

Summaries for NANOGP1 Gene

GeneCards Summary for NANOGP1 Gene

NANOGP1 (Nanog Homeobox Pseudogene 1) is a Pseudogene. GO annotations related to this gene include sequence-specific DNA binding.

UniProtKB/Swiss-Prot for NANOGP1 Gene

  • Probable transcriptional regulator.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NANOGP1 Gene

Genomics for NANOGP1 Gene

Regulatory Elements for NANOGP1 Gene

Enhancers for NANOGP1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around NANOGP1 on UCSC Golden Path with GeneCards custom track

Promoters for NANOGP1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around NANOGP1 on UCSC Golden Path with GeneCards custom track

Genomic Location for NANOGP1 Gene

Chromosome:
12
Start:
7,890,801 bp from pter
End:
7,900,140 bp from pter
Size:
9,340 bases
Orientation:
Plus strand

Genomic View for NANOGP1 Gene

Genes around NANOGP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NANOGP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NANOGP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NANOGP1 Gene

Proteins for NANOGP1 Gene

  • Protein details for NANOGP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N7R0-NANG2_HUMAN
    Recommended name:
    Putative homeobox protein NANOG2
    Protein Accession:
    Q8N7R0

    Protein attributes for NANOGP1 Gene

    Size:
    232 amino acids
    Molecular mass:
    26880 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NANOGP1 Gene

Proteomics data for NANOGP1 Gene at MOPED

Post-translational modifications for NANOGP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NANOGP1 Gene

Domains & Families for NANOGP1 Gene

Gene Families for NANOGP1 Gene

Protein Domains for NANOGP1 Gene

Suggested Antigen Peptide Sequences for NANOGP1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8N7R0

UniProtKB/Swiss-Prot:

NANG2_HUMAN :
  • Contains 1 homeobox DNA-binding domain.
  • Belongs to the Nanog homeobox family.
Domain:
  • Contains 1 homeobox DNA-binding domain.
Family:
  • Belongs to the Nanog homeobox family.
genes like me logo Genes that share domains with NANOGP1: view

Function for NANOGP1 Gene

Molecular function for NANOGP1 Gene

UniProtKB/Swiss-Prot Function:
Probable transcriptional regulator.

Phenotypes for NANOGP1 Gene

GenomeRNAi human phenotypes for NANOGP1:
genes like me logo Genes that share phenotypes with NANOGP1: view

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NANOGP1 Gene

Localization for NANOGP1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NANOGP1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NANOGP1 Gene COMPARTMENTS Subcellular localization image for NANOGP1 gene
Compartment Confidence
nucleus 5
cytosol 2

No data available for Gene Ontology (GO) - Cellular Components for NANOGP1 Gene

Pathways & Interactions for NANOGP1 Gene

SuperPathways for NANOGP1 Gene

No Data Available

Interacting Proteins for NANOGP1 Gene

Gene Ontology (GO) - Biological Process for NANOGP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with NANOGP1: view

No data available for Pathways by source and SIGNOR curated interactions for NANOGP1 Gene

Drugs & Compounds for NANOGP1 Gene

No Compound Related Data Available

Transcripts for NANOGP1 Gene

mRNA/cDNA for NANOGP1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NANOGP1 Gene

No ASD Table

Relevant External Links for NANOGP1 Gene

GeneLoc Exon Structure for
NANOGP1
ECgene alternative splicing isoforms for
NANOGP1

Expression for NANOGP1 Gene

mRNA expression in normal human tissues for NANOGP1 Gene

mRNA differential expression in normal tissues according to GTEx for NANOGP1 Gene

This gene is overexpressed in Testis (x18.6), Pancreas (x15.8), and Adrenal Gland (x12.9).

Protein differential expression in normal tissues from HIPED for NANOGP1 Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for NANOGP1 Gene



genes like me logo Genes that share expression patterns with NANOGP1: view

Protein tissue co-expression partners for NANOGP1 Gene

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for NANOGP1 Gene

Orthologs for NANOGP1 Gene

Evolution for NANOGP1 Gene

ENSEMBL:
Gene Tree for NANOGP1 (if available)
TreeFam:
Gene Tree for NANOGP1 (if available)

No data available for Orthologs for NANOGP1 Gene

Paralogs for NANOGP1 Gene

(3) SIMAP similar genes for NANOGP1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with NANOGP1: view

No data available for Paralogs for NANOGP1 Gene

Variants for NANOGP1 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for NANOGP1 Gene

Disorders for NANOGP1 Gene

Relevant External Links for NANOGP1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NANOGP1

No disorders were found for NANOGP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NANOGP1 Gene

Publications for NANOGP1 Gene

  1. Identification, cloning and expression analysis of the pluripotency promoting Nanog genes in mouse and human. (PMID: 15108323) Hart A.H. … Robb L. (Dev. Dyn. 2004) 2 3 4 67
  2. Eleven daughters of NANOG. (PMID: 15233988) Booth H.A. … Holland P.W. (Genomics 2004) 2 3
  3. On the origin and evolutionary history of NANOG. (PMID: 24465486) Scerbo P. … Girardot F. (PLoS ONE 2014) 3
  4. Embryonic NANOG activity defines colorectal cancer stem cells and modulates through AP1- and TCF-dependent mechanisms. (PMID: 22851508) Ibrahim E.E. … Nateri A.S. (Stem Cells 2012) 3
  5. Transcriptional properties of human NANOG1 and NANOG2 in acute leukemic cells. (PMID: 20427424) Eberle I. … Marschalek R. (Nucleic Acids Res. 2010) 3

Products for NANOGP1 Gene

Sources for NANOGP1 Gene

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