Free for academic non-profit institutions. Other users need a Commercial license

Aliases for NANOGP1 Gene

Aliases for NANOGP1 Gene

  • Nanog Homeobox Pseudogene 1 2 3 5
  • NANOG2 3 4
  • Nanog-Like Protein 3
  • Nanog Homeobox 2 3

External Ids for NANOGP1 Gene

Previous GeneCards Identifiers for NANOGP1 Gene

  • GC12U900442
  • GC12P007917
  • GC12P008028

Summaries for NANOGP1 Gene

GeneCards Summary for NANOGP1 Gene

NANOGP1 (Nanog Homeobox Pseudogene 1) is a Pseudogene. GO annotations related to this gene include sequence-specific DNA binding.

UniProtKB/Swiss-Prot for NANOGP1 Gene

  • Probable transcriptional regulator.

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NANOGP1 Gene

Genomics for NANOGP1 Gene

Regulatory Elements for NANOGP1 Gene

Enhancers for NANOGP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G007858 1.8 FANTOM5 Ensembl ENCODE dbSUPER 12.8 -30.3 -30312 3.4 SIN3A FEZF1 ZNF2 ZNF143 FOS TSHZ1 ZNF488 REST TBX21 ZNF579 SLC2A14 NANOGP1 ENSG00000255356 DEFB109F FAM66C CLEC4E RPS20P29 LOC100130582
GH12G007929 1.1 ENCODE 12.2 +38.8 38779 0.2 HDGF ARID4B SIN3A DMAP1 YY1 PAF1 SP3 SP5 ZHX2 REST NANOGP1 SLC2A14 ENSG00000255356 LOC100130582 FOXJ2 GC12M007881 GC12P007899
GH12G007834 1.1 FANTOM5 ENCODE 12.2 -55.8 -55828 0.9 ESRRA FOXA2 SAP130 CEBPG ZNF644 ZNF121 GATA3 CTBP1 ZNF3 RFX1 SLC2A3 FOXJ2 NANOGP1 SLC2A14 ENSG00000255356 DPPA3 CLEC4A NECAP1 ENSG00000201663 GC12M007850
GH12G007928 1 ENCODE 12.2 +38.0 37955 1.2 ATF1 SIN3A YY1 KDM4B PAF1 NCOA1 ZHX2 REST MIER2 ZNF592 SLC2A14 NANOGP1 ENSG00000255356 LOC100130582 FOXJ2 GC12M007881 GC12P007899
GH12G007915 0.9 FANTOM5 ENCODE dbSUPER 12.9 +25.7 25700 1.8 POLR2A SLC2A14 NANOGP1 GC12M007881 GC12P007899
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NANOGP1 on UCSC Golden Path with GeneCards custom track

Promoters for NANOGP1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000048453 499 201 ELF3 TBP MLX ARID4B DMAP1 ZNF48 RARA GATA4 SMARCC2 FOS

Genomic Location for NANOGP1 Gene

Chromosome:
12
Start:
7,890,801 bp from pter
End:
7,900,140 bp from pter
Size:
9,340 bases
Orientation:
Plus strand

Genomic View for NANOGP1 Gene

Genes around NANOGP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NANOGP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NANOGP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NANOGP1 Gene

Proteins for NANOGP1 Gene

  • Protein details for NANOGP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N7R0-NANG2_HUMAN
    Recommended name:
    Putative homeobox protein NANOG2
    Protein Accession:
    Q8N7R0

    Protein attributes for NANOGP1 Gene

    Size:
    232 amino acids
    Molecular mass:
    26880 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NANOGP1 Gene

Post-translational modifications for NANOGP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NANOGP1 Gene

Domains & Families for NANOGP1 Gene

Gene Families for NANOGP1 Gene

Protein Domains for NANOGP1 Gene

Suggested Antigen Peptide Sequences for NANOGP1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8N7R0

UniProtKB/Swiss-Prot:

NANG2_HUMAN :
  • Belongs to the Nanog homeobox family.
Family:
  • Belongs to the Nanog homeobox family.
genes like me logo Genes that share domains with NANOGP1: view

Function for NANOGP1 Gene

Molecular function for NANOGP1 Gene

UniProtKB/Swiss-Prot Function:
Probable transcriptional regulator.

Gene Ontology (GO) - Molecular Function for NANOGP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0043565 sequence-specific DNA binding IEA --
genes like me logo Genes that share ontologies with NANOGP1: view

Phenotypes for NANOGP1 Gene

GenomeRNAi human phenotypes for NANOGP1:
genes like me logo Genes that share phenotypes with NANOGP1: view

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NANOGP1 Gene

Localization for NANOGP1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NANOGP1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for NANOGP1 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for NANOGP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with NANOGP1: view

Pathways & Interactions for NANOGP1 Gene

SuperPathways for NANOGP1 Gene

No Data Available

Interacting Proteins for NANOGP1 Gene

Selected Interacting proteins: Q8N7R0-NANG2_HUMAN for NANOGP1 Gene via IID

Gene Ontology (GO) - Biological Process for NANOGP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with NANOGP1: view

No data available for Pathways by source and SIGNOR curated interactions for NANOGP1 Gene

Drugs & Compounds for NANOGP1 Gene

No Compound Related Data Available

Transcripts for NANOGP1 Gene

mRNA/cDNA for NANOGP1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NANOGP1 Gene

No ASD Table

Relevant External Links for NANOGP1 Gene

GeneLoc Exon Structure for
NANOGP1
ECgene alternative splicing isoforms for
NANOGP1

Expression for NANOGP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NANOGP1 Gene

mRNA differential expression in normal tissues according to GTEx for NANOGP1 Gene

This gene is overexpressed in Testis (x18.6), Pancreas (x15.8), and Adrenal Gland (x12.9).

Protein differential expression in normal tissues from HIPED for NANOGP1 Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for NANOGP1 Gene



Protein tissue co-expression partners for NANOGP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of NANOGP1 Gene:

NANOGP1
genes like me logo Genes that share expression patterns with NANOGP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NANOGP1 Gene

Orthologs for NANOGP1 Gene

Evolution for NANOGP1 Gene

ENSEMBL:
Gene Tree for NANOGP1 (if available)
TreeFam:
Gene Tree for NANOGP1 (if available)

No data available for Orthologs for NANOGP1 Gene

Paralogs for NANOGP1 Gene

(3) SIMAP similar genes for NANOGP1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with NANOGP1: view

No data available for Paralogs for NANOGP1 Gene

Variants for NANOGP1 Gene

Relevant External Links for NANOGP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NANOGP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NANOGP1 Gene

Disorders for NANOGP1 Gene

Relevant External Links for NANOGP1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NANOGP1

No disorders were found for NANOGP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NANOGP1 Gene

Publications for NANOGP1 Gene

  1. Identification, cloning and expression analysis of the pluripotency promoting Nanog genes in mouse and human. (PMID: 15108323) Hart A.H. … Robb L. (Dev. Dyn. 2004) 2 3 4 64
  2. Eleven daughters of NANOG. (PMID: 15233988) Booth H.A. … Holland P.W. (Genomics 2004) 2 3 4 64
  3. Evolution of the NANOG pseudogene family in the human and chimpanzee genomes. (PMID: 16469101) Fairbanks D.J. … Maughan P.J. (BMC Evol. Biol. 2006) 3 4 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  5. On the origin and evolutionary history of NANOG. (PMID: 24465486) Scerbo P. … Girardot F. (PLoS ONE 2014) 3 64

Products for NANOGP1 Gene

Sources for NANOGP1 Gene

Content
Loading form....