Free for academic non-profit institutions. Other users need a Commercial license

Aliases for NAMA Gene

Subcategory (RNA class) for NAMA Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NAMA Gene

  • Non-Protein Coding RNA, Associated With MAP Kinase Pathway And Growth Arrest 2 3 5

External Ids for NAMA Gene

Previous GeneCards Identifiers for NAMA Gene

  • GC00U933022
  • GC09U901756
  • GC09M102119

Summaries for NAMA Gene

GeneCards Summary for NAMA Gene

NAMA (Non-Protein Coding RNA, Associated With MAP Kinase Pathway And Growth Arrest) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for NAMA Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NAMA Gene

Genomics for NAMA Gene

Regulatory Elements for NAMA Gene

Enhancers for NAMA Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09H099367 1 ENCODE dbSUPER 5.3 +8.6 8601 2 TBL1XR1 EED FOS ATF7 RUNX3 IKZF2 CREM CHD2 MAZ TRIM22 NAMA ENSG00000277465 GC09P099375
GH09H099378 0.6 ENCODE 0.7 -1.4 -1434 0 SOX5 SOX13 HNF1A MAFG EP300 THRB RXRB TEAD3 NAMA ENSG00000234860
GH09H099432 1.6 FANTOM5 Ensembl ENCODE 0.2 -56.6 -56624 1 PKNOX1 FOXA2 BATF RARA ATF7 RCOR1 FOS ETV6 RUNX3 CREM NR4A3 TGFBR1 NAMA ENSG00000234860
GH09H099430 1 FANTOM5 Ensembl ENCODE 0.2 -53.7 -53720 1 JUND ALG2 NR4A3 NAMA ENSG00000234860
GH09H099419 0.6 FANTOM5 0.3 -42.0 -42023 0 HDAC1 CEBPB RCOR1 CEBPG ZNF518A NR4A3 NAMA ENSG00000234860
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NAMA on UCSC Golden Path with GeneCards custom track

Genomic Location for NAMA Gene

Chromosome:
9
Start:
99,355,337 bp from pter
End:
99,377,240 bp from pter
Size:
21,904 bases
Orientation:
Minus strand

Genomic View for NAMA Gene

Genes around NAMA on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NAMA Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NAMA Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NAMA Gene

Proteins for NAMA Gene

Post-translational modifications for NAMA Gene

No Post-translational modifications

No data available for DME Specific Peptides for NAMA Gene

Domains & Families for NAMA Gene

Gene Families for NAMA Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with NAMA: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NAMA Gene

Function for NAMA Gene

Phenotypes From GWAS Catalog for NAMA Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for NAMA
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NAMA Gene

Localization for NAMA Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NAMA Gene

Pathways & Interactions for NAMA Gene

No Data Available

Interacting Proteins for NAMA Gene

Gene Ontology (GO) - Biological Process for NAMA Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NAMA Gene

Drugs & Compounds for NAMA Gene

No Compound Related Data Available

Transcripts for NAMA Gene

mRNA/cDNA for NAMA Gene

(2) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NAMA Gene

Non-protein coding RNA, associated with MAP kinase pathway and growth arrest:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for NAMA
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for NAMA Gene

No ASD Table

Relevant External Links for NAMA Gene

GeneLoc Exon Structure for
NAMA
ECgene alternative splicing isoforms for
NAMA

Expression for NAMA Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NAMA Gene

mRNA differential expression in normal tissues according to GTEx for NAMA Gene

This gene is overexpressed in Testis (x6.4).

NURSA nuclear receptor signaling pathways regulating expression of NAMA Gene:

NAMA

SOURCE GeneReport for Unigene cluster for NAMA Gene:

Hs.745280
genes like me logo Genes that share expression patterns with NAMA: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NAMA Gene

Orthologs for NAMA Gene

Evolution for NAMA Gene

ENSEMBL:
Gene Tree for NAMA (if available)
TreeFam:
Gene Tree for NAMA (if available)

No data available for Orthologs for NAMA Gene

Paralogs for NAMA Gene

No data available for Paralogs for NAMA Gene

Variants for NAMA Gene

Sequence variations from dbSNP and Humsavar for NAMA Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000056422 -- 99,366,912(+) ATTAT(C/G)TCTAT intron-variant
rs1000143806 -- 99,359,650(+) GTTTA(A/G)TGGAG intron-variant
rs1000166575 -- 99,358,714(+) GGCCA(C/T)GGGGA intron-variant
rs1000236523 -- 99,360,962(+) CCTAC(C/T)ATGCT intron-variant
rs1000296383 -- 99,367,232(+) AGCTA(C/T)AATCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NAMA Gene

Variant ID Type Subtype PubMed ID
esv3621214 CNV gain 21293372
nsv1046898 CNV gain 25217958
nsv831667 CNV gain 17160897

Relevant External Links for NAMA Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NAMA

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NAMA Gene

Disorders for NAMA Gene

Relevant External Links for NAMA

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NAMA

No disorders were found for NAMA Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NAMA Gene

Publications for NAMA Gene

  1. Identification of a novel noncoding RNA gene, NAMA, that is downregulated in papillary thyroid carcinoma with BRAF mutation and associated with growth arrest. (PMID: 17415708) Yoon H … Chapelle Ade L (International journal of cancer 2007) 2 3 60
  2. BRAF-Activated Long Noncoding RNA Modulates Papillary Thyroid Carcinoma Cell Proliferation through Regulating Thyroid Stimulating Hormone Receptor. (PMID: 26323637) Zheng H … Xu J (Cancer research and treatment : official journal of Korean Cancer Association 2016) 3 60
  3. Genetics of callous-unemotional behavior in children. (PMID: 23874384) Viding E … Plomin R (PloS one 2013) 3 60

Products for NAMA Gene

Sources for NAMA Gene

Content
Loading form....