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Aliases for NALCN-AS1 Gene

Subcategory (RNA class) for NALCN-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for NALCN-AS1 Gene

  • NALCN Antisense RNA 1 2 3 5
  • NALCN Antisense RNA 1 (Non-Protein Coding) 2

External Ids for NALCN-AS1 Gene

Previous GeneCards Identifiers for NALCN-AS1 Gene

  • GC00U933572
  • GC13P101361

Summaries for NALCN-AS1 Gene

GeneCards Summary for NALCN-AS1 Gene

NALCN-AS1 (NALCN Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NALCN-AS1 Gene

Genomics for NALCN-AS1 Gene

Regulatory Elements for NALCN-AS1 Gene

Enhancers for NALCN-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F100724 0.2 ENCODE 0.3 +16.5 16457 0.2 NALCN-AS1 ARF4P3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NALCN-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for NALCN-AS1 Gene

100,708,325 bp from pter
101,059,286 bp from pter
350,962 bases
Plus strand

Genomic View for NALCN-AS1 Gene

Genes around NALCN-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NALCN-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NALCN-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NALCN-AS1 Gene

Proteins for NALCN-AS1 Gene

Post-translational modifications for NALCN-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NALCN-AS1 Gene

Domains & Families for NALCN-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NALCN-AS1 Gene

Function for NALCN-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NALCN-AS1 Gene

Localization for NALCN-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NALCN-AS1 Gene

Pathways & Interactions for NALCN-AS1 Gene

SuperPathways for NALCN-AS1 Gene

No Data Available

Interacting Proteins for NALCN-AS1 Gene

Gene Ontology (GO) - Biological Process for NALCN-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for NALCN-AS1 Gene

Transcripts for NALCN-AS1 Gene

mRNA/cDNA for NALCN-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NALCN-AS1 Gene

NALCN antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NALCN-AS1 Gene

No ASD Table

Relevant External Links for NALCN-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for NALCN-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NALCN-AS1 Gene

SOURCE GeneReport for Unigene cluster for NALCN-AS1 Gene:

genes like me logo Genes that share expression patterns with NALCN-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for NALCN-AS1 Gene

Orthologs for NALCN-AS1 Gene

Evolution for NALCN-AS1 Gene

Gene Tree for NALCN-AS1 (if available)
Gene Tree for NALCN-AS1 (if available)

No data available for Orthologs for NALCN-AS1 Gene

Paralogs for NALCN-AS1 Gene

No data available for Paralogs for NALCN-AS1 Gene

Variants for NALCN-AS1 Gene

Sequence variations from dbSNP and Humsavar for NALCN-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs78817184 Likely benign 101,057,985(-) GCCGA(C/G/T)GCAGG nc-transcript-variant, reference, synonymous-codon, missense
rs1008089 -- 100,728,352(+) aaagc(A/C)gtctg intron-variant
rs1008090 -- 100,728,486(+) ccccc(A/T)tccca intron-variant
rs10161925 -- 100,739,894(+) aaaat(G/T)gttaa intron-variant
rs10162011 -- 101,041,132(+) agagg(C/T)cccag intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NALCN-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv951911 CNV duplication 24416366
nsv832699 CNV gain 17160897
nsv826768 CNV loss 20364138
nsv7247 OTHER inversion 18451855
nsv562959 CNV loss 21841781
nsv562958 CNV loss 21841781
nsv562955 CNV gain 21841781
nsv524376 CNV gain 19592680
nsv514687 CNV gain 21397061
nsv456095 CNV gain 19166990
nsv456094 CNV gain 19166990
nsv1149 CNV deletion 18451855
nsv1148 CNV insertion 18451855
nsv1147 CNV deletion 18451855
nsv1141477 CNV deletion 24896259
esv3633353 CNV loss 21293372
esv3633352 CNV loss 21293372
esv3633351 CNV loss 21293372
esv3633350 CNV loss 21293372
esv3633349 CNV loss 21293372
esv3421495 CNV insertion 20981092
esv3409774 CNV insertion 20981092
esv3376135 CNV insertion 20981092
esv3329889 CNV insertion 20981092
esv3309602 CNV mobile element insertion 20981092
esv2747895 CNV deletion 23290073
esv2747894 CNV deletion 23290073
esv2747893 CNV deletion 23290073
esv2747892 CNV deletion 23290073
esv2747891 CNV deletion 23290073
esv2747888 CNV deletion 23290073
esv2747887 CNV deletion 23290073
esv2747886 CNV deletion 23290073
esv2747884 CNV deletion 23290073
esv2747883 CNV deletion 23290073
esv2296977 CNV deletion 18987734
esv2206104 CNV deletion 18987734
esv1774079 CNV deletion 17803354
dgv3363n54 CNV gain 21841781

Relevant External Links for NALCN-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NALCN-AS1 Gene

Disorders for NALCN-AS1 Gene

Relevant External Links for NALCN-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for NALCN-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NALCN-AS1 Gene

Publications for NALCN-AS1 Gene

  1. A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder. (PMID: 20889312) Wang K.S. … Aragam N. (Schizophr. Res. 2010) 3 64

Products for NALCN-AS1 Gene

Sources for NALCN-AS1 Gene

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