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Aliases for NAGPA-AS1 Gene

Subcategory (RNA class) for NAGPA-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for NAGPA-AS1 Gene

  • NAGPA Antisense RNA 1 2 3
  • NAGPA Antisense RNA 1 (Non-Protein Coding) 2

External Ids for NAGPA-AS1 Gene

Summaries for NAGPA-AS1 Gene

GeneCards Summary for NAGPA-AS1 Gene

NAGPA-AS1 (NAGPA Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NAGPA-AS1 Gene

Genomics for NAGPA-AS1 Gene

Regulatory Elements for NAGPA-AS1 Gene


Promoters for NAGPA-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around NAGPA-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for NAGPA-AS1 Gene

Chromosome:
16
Start:
5,033,702 bp from pter
End:
5,042,971 bp from pter
Size:
9,270 bases
Orientation:
Plus strand

Genomic View for NAGPA-AS1 Gene

Genes around NAGPA-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NAGPA-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NAGPA-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NAGPA-AS1 Gene

Proteins for NAGPA-AS1 Gene

Post-translational modifications for NAGPA-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NAGPA-AS1 Gene

Domains & Families for NAGPA-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NAGPA-AS1 Gene

Function for NAGPA-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NAGPA-AS1 Gene

Localization for NAGPA-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NAGPA-AS1 Gene

Pathways & Interactions for NAGPA-AS1 Gene

SuperPathways for NAGPA-AS1 Gene

No Data Available

Interacting Proteins for NAGPA-AS1 Gene

Gene Ontology (GO) - Biological Process for NAGPA-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NAGPA-AS1 Gene

Drugs & Compounds for NAGPA-AS1 Gene

No Compound Related Data Available

Transcripts for NAGPA-AS1 Gene

mRNA/cDNA for NAGPA-AS1 Gene

(2) Additional mRNA sequences :

Unigene Clusters for NAGPA-AS1 Gene

NAGPA antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NAGPA-AS1 Gene

No ASD Table

Relevant External Links for NAGPA-AS1 Gene

GeneLoc Exon Structure for
NAGPA-AS1
ECgene alternative splicing isoforms for
NAGPA-AS1

Expression for NAGPA-AS1 Gene

SOURCE GeneReport for Unigene cluster for NAGPA-AS1 Gene Hs.729936

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for NAGPA-AS1 Gene

Orthologs for NAGPA-AS1 Gene

No data available for Orthologs and Evolution for NAGPA-AS1 Gene

Paralogs for NAGPA-AS1 Gene

No data available for Paralogs for NAGPA-AS1 Gene

Variants for NAGPA-AS1 Gene

Sequence variations from dbSNP and Humsavar for NAGPA-AS1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs9923058 -- 5,039,881(+) AGGGG(A/G)CAGAA intron-variant
rs13336085 -- 5,039,895(+) TAGCC(A/G)CTGAG intron-variant
rs759205 -- 5,037,956(-) TATGA(C/T)AGAAT intron-variant
rs759206 -- 5,037,296(-) aaaaa(A/C)tccta intron-variant
rs882294 -- 5,042,117(-) TTACC(A/G)AACCA nc-transcript-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for NAGPA-AS1 Gene

Disorders for NAGPA-AS1 Gene

Relevant External Links for NAGPA-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NAGPA-AS1

No disorders were found for NAGPA-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NAGPA-AS1 Gene

Publications for NAGPA-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 67

Products for NAGPA-AS1 Gene

Sources for NAGPA-AS1 Gene

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