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Aliases & Descriptions for NAGPA
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| APAA 1, 2 | | EC 3.1.4.45 3 | | UCE 1, 2 |
| | | Descriptions |
|---|
| Mannose 6-phosphate-uncovering enzyme 2, 3 | N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase 2 | | Phosphodiester alpha-GlcNAcase 2, 3 | | alpha-N-acetylglucosaminyl phosphodiesterase 2 | | lysosomal alpha-N-acetylglucosaminidase 2 |
|
| | Search outside databases for aliases for NAGPA genePrevious GC identifers: GC16M005107 GC16M005075 |
Summaries for NAGPA(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for NAGPA: Hydrolases are transported to lysosomes after binding to mannose 6-phosphate receptors in the trans-Golgi network. This gene encodes the enzyme that catalyzes the second step in the formation of the mannose 6-phosphate recognition marker on lysosomal hydrolases. Commonly known as 'uncovering enzyme' or UCE, this enzyme removes N-acetyl-D-glucosamine (GlcNAc) residues from GlcNAc-alpha-P-mannose moieties and thereby produces the recognition marker. This reaction most likely occurs in the trans-Golgi network. This enzyme functions as a homotetramer of two disulfide-linked homodimers. In addition to having an N-terminal signal peptide, the protein's C-terminus contains multiple signals for trafficking it between lysosomes, the plasma membrane, and trans-Golgi network. [provided by RefSeq] UniProtKB/Swiss-Prot: NAGPA_HUMAN, Q9UK23Function: Catalyzes the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first stepGene Wiki entry for NAGPA |
Genomic Location for NAGPA
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the NAGPA gene 
Entrez Gene cytogenetic band: 16p13.3 Ensembl cytogenetic band: 16p13.3 HGNC cytogenetic band: 16p13.3NAGPA Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 16 GeneLoc Exon Structure GeneLoc location for GC16M005014:
(about GC identifiers)
Start:
|
5,014,846 bp from pter |
End:
|
5,023,937 bp from pter |
Size:
|
9,092 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000016.8 NT_037887.4
| Proteins for NAGPA
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: NAGPA_HUMAN, Q9UK23 (See
protein sequence)Recommended Name: N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase precursor Size: 515 amino acids; 56153 Da
Subunit: Homotetramer arranged as two disulfide-linked homodimers (By similarity)
Subcellular location: Golgi apparatus, Golgi stack membrane; Single-pass type I membrane protein. Note=Cis/medial Golgi
Secondary accessions: Q96EJ8Alternative splicing: 3 isoforms: Q9UK23-1 Q9UK23-2 Q9UK23-3 REFSEQ proteins: NP_057340.2
ENSEMBL proteins: ENSP00000310998 ENSP00000371381
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for NAGPA: Assays for NAGPA: | Protein
Domains/ Families for NAGPA(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q9UK23
ProtoNet protein and cluster: Q9UK23 UniProtKB/Swiss-Prot: NAGPA_HUMAN, Q9UK23Domain: The tyrosine-based internalization signal may be essential for its retrieval from the plasma membrane to the TGNDomain: The C-terminal NPFKD sequence is an attractive candidate for either an endocytosis signal acting at the plasma membrane or a retrieval signal acting at the TGN to return the enzyme to the cis/medial-GolgiSimilarity: Contains 1 EGF-like domain | Gene Function for NAGPA
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_016256
Applied Biosystems Silencer® siRNAs for NAGPA
Sigma-Aldrich siRNA for NAGPA  Sigma-Aldrich shRNA for NAGPA  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_016256                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_016256                                  untagged cDNA clone in CMV expression vector: NM_016256 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_016256
UniProtKB/Swiss-Prot: NAGPA_HUMAN, Q9UK23Function: Catalyzes the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first stepCatalytic activity: Glycoprotein N-acetyl-D-glucosaminyl-phospho-D-mannose + H(2)O = N-acetyl-D-glucosamine + glycoprotein phospho-D-mannoseEnzyme Number (IUBMB): EC 3.1.4.45 2 Gene Ontology (GO) molecular function terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0003944 | N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase activity |
TAS | 10551838 | | GO:0016787 | hydrolase activity |
IEA | -- | About this table | Pathways & Interactions for NAGPA
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| UniProtKB/Swiss-Prot: NAGPA_HUMAN, Q9UK23Pathway: Protein modification; protein glycosylation 5/13 Interacting proteins for NAGPA (ENSP000003109983) via UniProtKB, MINT, and/or STRING (see all 13
)About this table
4 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for NAGPA(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for NAGPA 5 Novoseek chemical compound relationships for NAGPA gene
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| mannose 6-phosphate |
89.04 |
12 |
15864430 (1), 12058031 (1), 17927214 (1), 8294420 (1) (see all 7) |
| udp-n-acetylglucosamine |
75.62 |
2 |
8294420 (1), 2167847 (1) |
| n-acetylglucosamine |
72.69 |
6 |
15864430 (1), 12058031 (1), 7786023 (1), 11408573 (1) |
| phosphodiester |
72.65 |
15 |
8294420 (4), 10551838 (4), 7786023 (2) |
| mannose |
45.67 |
2 |
12058031 (1), 11723124 (1) |
About this table
|
Transcripts for NAGPA(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_016256
Sigma-Aldrich siRNA for NAGPA  Sigma-Aldrich shRNA for NAGPA  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_016256 REFSEQ mRNAs for NAGPA gene: NM_016256.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_016256               OriGene GFP tagged cDNA clone in CMV expression vector: NM_016256                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_016256                                  untagged cDNA clone in CMV expression vector: NM_016256  Additional cDNA sequence: AF052111.1 AF187072.1 AK025570.1 AK026122.1 AK127952.1 AK302916.1 AK314320.1 BC012194.1 CR598113.1 CR599974.1 CR601621.1 11 DOTS entries: DT.312162 DT.100790624 DT.100790628 DT.92023445 DT.95199040 DT.100790623 DT.95280284 DT.100024248 DT.100767383 DT.87010533 DT.92424627 24/131 AceView cDNA sequences (see all 131
):BU844409 CB123089 CR598113 CR601621 BI193076 AL524697 BM457386 CR599974 AA047671 AW239249 BU859544 BI753989 BU188674 BX352485 AI805575 AF052111 BX401157 BX341574 BI517588 AI452628 BQ372847 BX377209 BI518126 BQ962119
highest scoring ESTs for NAGPA:AF187072 AK025570 AK026122 AK127952 AU280565 AW239249 BC012194 BG328417 BG422200 BG470128 Unigene Cluster for NAGPA: N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase Hs.21334 [show with all ESTs]Unigene Representative Sequence: BC012194
GeneLoc Exon Structure
5/13 Alternative Splicing Database (ASD) splice patterns (SP) for NAGPA (see all 13
)
| ExUns: | 1a | · | 1b | · | 1c | · | 1d | · | 1e | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6a | · | 6b | · | 6c | ^ | 7 | ^ | 8a | · | 8b | ^ | 9a | · | 9b | · | 9c | ^ | 10 | ^ | 11a | · | 11b | · | 11c | · | 11d | ^ | 12 | ^ | 13a | · | 13b | · | |
| SP1: | |   | |   | |   | |   | |   | |   | - |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | - |   | |   | |   | - |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | - |   | |   | |   | - |   | |   | |   | |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | - |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for NAGPA
2 Ensembl transcripts including schematic representations: ENST00000312251
ENST00000381955
|
Expression for NAGPA
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| NAGPA expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for NAGPA
1 / 2 / 3 5 probe-sets matching NAGPA gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TTTACAGACC
SOURCE GeneReport for Unigene cluster: Hs.21334
Expression variation in blood from EXPOLDB for NAGPA |
Orthologs for NAGPA
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for NAGPA gene from 5/6 species (see all 6
)
| Organism |
Gene |
Locus |
Description |
Human Similarity |
NCBI accessions |
dog (Canis familiaris) |
NAGPA1 |
-- |
N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase |
86.58(n) 85.8(a) |
490019 XM_547139.2 XP_547139.2 |
chimpanzee (Pan troglodytes) |
NAGPA1 |
-- |
N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase |
99.35(n) 99.61(a) |
453894 XM_510795.2 XP_510795.2 |
cow (Bos taurus) |
NAGPA1 |
-- |
N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase |
85.37(n) 83.11(a) |
515935 XM_594044.3 XP_594044.2 |
rat (Rattus norvegicus) |
Nagpa1 |
-- |
N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase |
81.81(n) 81.36(a) |
360476 XM_340751.3 XP_340752.2 |
mouse (Mus musculus) |
Nagpa1, 5 |
165
|
N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase1, 5 |
82.33(n)1 80.58(a)1 |
274261 NM_013796.21 NP_038824.11 AF1870735 AI5961805 (see all 18) |
About this table Species with no ortholog for NAGPA
ENSEMBL Gene Tree for NAGPA | Paralogs for NAGPA(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| -- |
SNPs/Variants for NAGPA(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for NAGPA (up to first 250kb)
|
Disorders & Mutations for NAGPA
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 607985
|
Medical News for NAGPA(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for NAGPA (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/18 PubMed articles for NAGPA gene (see all 18
):- Molecular cloning and functional expression of two splice forms of human N-acetylglucosamine-1-phosphodiester alpha-N- acetylglucosaminidase. (PubMed id 10551838)1, 2, 3, 4 Kornfeld R.H.... Canfield W.M. (1999)
- Human mannose 6-phosphate-uncovering enzyme is synthesized as a proenzyme that is activated by the endoprotease furin. (PubMed id 12058031)1, 2, 3 Do H....Kornfeld S. (2002)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Lysosomal hydrolase mannose 6-phosphate uncovering enzyme resides in the trans-Golgi network. (PubMed id 11408573)1, 3 Rohrer J. and Kornfeld R. (2001)
- Purification and characterization of human serum N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase. (PubMed id 7786023)1, 3 Lee J.K. and Pierce M. (1995)
- Multiple signals regulate trafficking of the mannose 6-phosphate-uncovering enzyme. (PubMed id 11723124)1, 3 Lee W.S....Kornfeld S. (2002)
- Purification and characterization of human lymphoblast N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase. (PubMed id 8922957)1, 3 Page T....Miller A.L. (1996)
- Characterization of the TGN exit signal of the human mannose 6-phosphate uncovering enzyme. (PubMed id 15976452)3 Nair P....Rohrer J. (2005)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)3 Ota T....Sugano S. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)3 Strausberg R.L....Marra M.A. (2002)
|
Search for NAGPA
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing NAGPA
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing NAGPA
(According to HUGE)
About This Section
| -- |
Specialized Databases showing NAGPA(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for NAGPA(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for NAGPA:

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Incremental update: 13 Oct 2009
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