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Aliases for NACAP1 Gene

Aliases for NACAP1 Gene

  • Nascent Polypeptide Associated Complex Alpha Subunit Pseudogene 1 2 3 5
  • Nascent-Polypeptide-Associated Complex Alpha Polypeptide Pseudogene 1 2 3
  • Alpha-NAC Pseudogene 1 4
  • NAC-Alpha Pseudogene 1 4
  • FKSG17 3

External Ids for NACAP1 Gene

Previous GeneCards Identifiers for NACAP1 Gene

  • GC08P102451
  • GC08P097580
  • GC08P102376

Summaries for NACAP1 Gene

GeneCards Summary for NACAP1 Gene

NACAP1 (Nascent Polypeptide Associated Complex Alpha Subunit Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NACAP1 Gene

Genomics for NACAP1 Gene

Regulatory Elements for NACAP1 Gene

Enhancers for NACAP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G101357 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -1.2 -1183 6.5 HDGF PKNOX1 FOXA2 ARID4B SIN3A YBX1 ZBTB7B YY1 ZNF121 ZNF207 NACAP1 ENSG00000271560
GH08G101364 0.5 ENCODE 0.7 +2.9 2936 1.0 GATA3 CREB3L1 CEBPB IRF1 CEBPG GC08M101367 NACAP1
GH08G101341 0.7 ENCODE 0.4 -19.7 -19651 1.5 ESRRA JUN EBF1 CTBP1 GATA3 FOSL2 FOS TCF7L2 RFX1 ZNF687 ENSG00000271560 NACAP1
GH08G101355 0.6 ENCODE 0.4 -5.2 -5177 1.4 GATA3 ZNF687 RFX1 RCOR1 FOS ZNF300 ZNF592 GRHL2 LOC101927172 NACAP1 ENSG00000271560
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NACAP1 on UCSC Golden Path with GeneCards custom track

Genomic Location for NACAP1 Gene

Chromosome:
8
Start:
101,361,794 bp from pter
End:
101,372,707 bp from pter
Size:
10,914 bases
Orientation:
Plus strand

Genomic View for NACAP1 Gene

Genes around NACAP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NACAP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NACAP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NACAP1 Gene

Proteins for NACAP1 Gene

  • Protein details for NACAP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BZK3-NACP1_HUMAN
    Recommended name:
    Putative nascent polypeptide-associated complex subunit alpha-like protein
    Protein Accession:
    Q9BZK3

    Protein attributes for NACAP1 Gene

    Size:
    213 amino acids
    Molecular mass:
    23306 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NACAP1 Gene

Post-translational modifications for NACAP1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for NACAP1 Gene

Domains & Families for NACAP1 Gene

Protein Domains for NACAP1 Gene

Suggested Antigen Peptide Sequences for NACAP1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BZK3

UniProtKB/Swiss-Prot:

NACP1_HUMAN :
  • Belongs to the NAC-alpha family.
Family:
  • Belongs to the NAC-alpha family.
genes like me logo Genes that share domains with NACAP1: view

No data available for Gene Families for NACAP1 Gene

Function for NACAP1 Gene

genes like me logo Genes that share phenotypes with NACAP1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NACAP1 Gene

Localization for NACAP1 Gene

Gene Ontology (GO) - Cellular Components for NACAP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005854 nascent polypeptide-associated complex IEA --
genes like me logo Genes that share ontologies with NACAP1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for NACAP1 Gene

Pathways & Interactions for NACAP1 Gene

SuperPathways for NACAP1 Gene

No Data Available

Interacting Proteins for NACAP1 Gene

Selected Interacting proteins: Q9BZK3-NACP1_HUMAN for NACAP1 Gene via IID

Gene Ontology (GO) - Biological Process for NACAP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NACAP1 Gene

Drugs & Compounds for NACAP1 Gene

No Compound Related Data Available

Transcripts for NACAP1 Gene

mRNA/cDNA for NACAP1 Gene

(1) REFSEQ mRNAs :
(8) Additional mRNA sequences :
(5) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NACAP1 Gene

Nascent-polypeptide-associated complex alpha polypeptide pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NACAP1 Gene

No ASD Table

Relevant External Links for NACAP1 Gene

GeneLoc Exon Structure for
NACAP1
ECgene alternative splicing isoforms for
NACAP1

Expression for NACAP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NACAP1 Gene

mRNA differential expression in normal tissues according to GTEx for NACAP1 Gene

This gene is overexpressed in Testis (x19.4).

Protein differential expression in normal tissues from HIPED for NACAP1 Gene

This gene is overexpressed in Urine (21.6), Cervix (12.8), Blymphocyte (11.7), Fetal Brain (9.4), and Tlymphocyte (7.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for NACAP1 Gene



NURSA nuclear receptor signaling pathways regulating expression of NACAP1 Gene:

NACAP1

SOURCE GeneReport for Unigene cluster for NACAP1 Gene:

Hs.567608
genes like me logo Genes that share expression patterns with NACAP1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NACAP1 Gene

Orthologs for NACAP1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for NACAP1 Gene

Organism Taxonomy Gene Similarity Type Details
soybean
(Glycine max)
eudicotyledons Gma.9967 34
Species where no ortholog for NACAP1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for NACAP1 Gene

ENSEMBL:
Gene Tree for NACAP1 (if available)
TreeFam:
Gene Tree for NACAP1 (if available)

Paralogs for NACAP1 Gene

(3) SIMAP similar genes for NACAP1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with NACAP1: view

No data available for Paralogs for NACAP1 Gene

Variants for NACAP1 Gene

Sequence variations from dbSNP and Humsavar for NACAP1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1003276356 -- 101,368,069(+) TTTGA(A/G)TGCCA upstream-variant-2KB
rs1003739725 -- 101,367,780(+) AGACC(C/G)TGTCT upstream-variant-2KB
rs1003915414 -- 101,367,183(+) TGCAT(A/G)TAATT upstream-variant-2KB
rs1006000799 -- 101,368,776(+) CAGAC(C/T)TTCCC upstream-variant-2KB
rs1007064349 -- 101,369,116(+) CAGAG(G/T)CGGAG nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for NACAP1 Gene

Variant ID Type Subtype PubMed ID
nsv981970 CNV duplication 23825009

Relevant External Links for NACAP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NACAP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NACAP1 Gene

Disorders for NACAP1 Gene

Relevant External Links for NACAP1

Genetic Association Database (GAD)
NACAP1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NACAP1

No disorders were found for NACAP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NACAP1 Gene

Publications for NACAP1 Gene

  1. Identification of human protein interaction domains using an ORFeome-based yeast two-hybrid fragment library. (PMID: 23718855) Waaijers S. … Boxem M. (J. Proteome Res. 2013) 3 64
  2. A census of human soluble protein complexes. (PMID: 22939629) Havugimana P.C. … Emili A. (Cell 2012) 3 64
  3. Mapping a dynamic innate immunity protein interaction network regulating type I interferon production. (PMID: 21903422) Li S. … Dorf M.E. (Immunity 2011) 3 64
  4. Initial characterization of the human central proteome. (PMID: 21269460) Burkard T.R. … Colinge J. (BMC Syst. Biol. 2011) 4 64
  5. Defining the human deubiquitinating enzyme interaction landscape. (PMID: 19615732) Sowa M.E. … Harper J.W. (Cell 2009) 3 64

Products for NACAP1 Gene

Sources for NACAP1 Gene

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