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Aliases for NACAP1 Gene

Aliases for NACAP1 Gene

  • Nascent-Polypeptide-Associated Complex Alpha Polypeptide Pseudogene 1 2 3
  • Alpha-NAC Pseudogene 1 4
  • NAC-Alpha Pseudogene 1 4
  • FKSG17 3

External Ids for NACAP1 Gene

Previous GeneCards Identifiers for NACAP1 Gene

  • GC08P102451
  • GC08P097580
  • GC08P102376

Summaries for NACAP1 Gene

GeneCards Summary for NACAP1 Gene

NACAP1 (Nascent-Polypeptide-Associated Complex Alpha Polypeptide Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NACAP1 Gene

Genomics for NACAP1 Gene

Regulatory Elements for NACAP1 Gene

Genomic Location for NACAP1 Gene

Start:
101,361,794 bp from pter
End:
101,372,707 bp from pter
Size:
10,914 bases
Orientation:
Plus strand

Genomic View for NACAP1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NACAP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NACAP1 Gene

Proteins for NACAP1 Gene

  • Protein details for NACAP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BZK3-NACP1_HUMAN
    Recommended name:
    Putative nascent polypeptide-associated complex subunit alpha-like protein
    Protein Accession:
    Q9BZK3
    Secondary Accessions:

    Protein attributes for NACAP1 Gene

    Size:
    213 amino acids
    Molecular mass:
    23306 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NACAP1 Gene

Proteomics data for NACAP1 Gene at MOPED

Post-translational modifications for NACAP1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for NACAP1 Gene

Domains for NACAP1 Gene

Protein Domains for NACAP1 Gene

Suggested Antigen Peptide Sequences for NACAP1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BZK3

UniProtKB/Swiss-Prot:

NACP1_HUMAN :
  • Q9BZK3
Domain:
  • Contains 1 NAC-A/B (NAC-alpha/beta) domain.
  • Contains 1 UBA domain.
Family:
  • Belongs to the NAC-alpha family.
genes like me logo Genes that share domains with NACAP1: view

No data available for Gene Families for NACAP1 Gene

Function for NACAP1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for NACAP1 Gene

Localization for NACAP1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NACAP1 Gene COMPARTMENTS Subcellular localization image for NACAP1 gene
Compartment Confidence
cytosol 3
nucleus 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for NACAP1 Gene

Pathways for NACAP1 Gene

SuperPathways for NACAP1 Gene

No Data Available

Interacting Proteins for NACAP1 Gene

Gene Ontology (GO) - Biological Process for NACAP1 Gene

None

No data available for Pathways by source for NACAP1 Gene

Transcripts for NACAP1 Gene

mRNA/cDNA for NACAP1 Gene

(5) Selected AceView cDNA sequences:
(8) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NACAP1 Gene

Nascent-polypeptide-associated complex alpha polypeptide pseudogene 1:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for NACAP1

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for NACAP1
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for NACAP1 Gene

No ASD Table

Relevant External Links for NACAP1 Gene

GeneLoc Exon Structure for
NACAP1
ECgene alternative splicing isoforms for
NACAP1

Expression for NACAP1 Gene

mRNA expression in normal human tissues for NACAP1 Gene

mRNA differential expression in normal tissues according to GTEx for NACAP1 Gene

This gene is overexpressed in Testis (19.4).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for NACAP1 Gene

SOURCE GeneReport for Unigene cluster for NACAP1 Gene Hs.567608

genes like me logo Genes that share expressions with NACAP1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for NACAP1 Gene

Orthologs for NACAP1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for NACAP1 Gene

Organism Taxonomy Gene Similarity Type Details
soybean
(Glycine max)
eudicotyledons Gma.9967 35
Species with no ortholog for NACAP1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for NACAP1 Gene

ENSEMBL:
Gene Tree for NACAP1 (if available)
TreeFam:
Gene Tree for NACAP1 (if available)

Paralogs for NACAP1 Gene

Selected SIMAP similar genes for NACAP1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with NACAP1: view

No data available for Paralogs for NACAP1 Gene

Variants for NACAP1 Gene

Sequence variations from dbSNP and Humsavar for NACAP1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs7844207 -- 101,369,568(+) AACTT(C/T)TTTGG nc-transcript-variant
rs10095458 -- 101,369,445(+) AAGGA(C/T)ATAGA nc-transcript-variant
rs10100433 -- 101,367,069(+) CCCAT(A/G)ATCTC upstream-variant-2KB
rs10108277 -- 101,369,191(+) GTCAC(C/T)ATCCG nc-transcript-variant
rs28683684 -- 101,369,834(+) AGGCA(A/G)GCAGA downstream-variant-500B

Relevant External Links for NACAP1 Gene

HapMap Linkage Disequilibrium report
NACAP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for NACAP1 Gene

Disorders for NACAP1 Gene

Relevant External Links for NACAP1

Genetic Association Database (GAD)
NACAP1
genes like me logo Genes that share disorders with NACAP1: view

No data available for UniProtKB/Swiss-Prot for NACAP1 Gene

Publications for NACAP1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Large-scale mapping of human protein-protein interactions by mass spectrometry. (PMID: 17353931) Ewing R.M. … Figeys D. (Mol. Syst. Biol. 2007) 3
  3. Defining the human deubiquitinating enzyme interaction landscape. (PMID: 19615732) Sowa M.E. … Harper J.W. (Cell 2009) 3
  4. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PMID: 21139048) Danielsen J.M. … Nielsen M.L. (Mol. Cell Proteomics 2011) 3
  5. Mapping a dynamic innate immunity protein interaction network regulating type I interferon production. (PMID: 21903422) Li S. … Dorf M.E. (Immunity 2011) 3

Products for NACAP1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate NACAP1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for NACAP1
    • Block miRNA regulation of NACAP1 using miScript Target Protectors

    Sources for NACAP1 Gene

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