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Aliases & Descriptions for NACA
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases Alpha-NAC 3 HSD48 2 MGC117224 2 NAC-alpha 3 NACA1 1 , 2
Descriptions Allergen Hom s 2 3 nascent polypeptide-associated complex alpha subunit 2 nascent-polypeptide-associated complex alpha polypeptide 1 , 2
Search outside databases for aliases for NACA genePrevious GC identifers: GC12M057078 GC12M057330 GC12M056820
Summaries for NACA (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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UniProtKB/Swiss-Prot: NACA_HUMAN, Q13765 Function : Prevents inappropriate targeting of non-secretory polypeptides to the endoplasmicreticulum (ER). Binds to nascent polypeptide chains as they emerge from the ribosome and blockstheir interaction with the signal recognition particle (SRP), which normally targets nascentsecretory peptides to the ER. Also reduces the inherent affinity of ribosomes for proteintranslocation sites in the ER membrane (M sites). May act as a specific coactivator for JUN,binding to DNA and stabilizing the interaction of JUN homodimers with target gene promoters
Gene Wiki entry for NACA
Genomic Location for NACA
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
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Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the NACA gene Entrez Gene cytogenetic band: 12q23-q24.1 Ensembl cytogenetic band: 12q13.3 HGNC cytogenetic band: 12q23-q24.1 NACA Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 12 GeneLoc Exon Structure
GeneLoc location for GC12M055392:
(about GC identifiers )
Start:
55,380,832 bp from pter
End:
55,405,350 bp from pter
Size:
24,519 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000012.10 NT_029419.11 Proteins for NACA
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: NACA_HUMAN, Q13765 (See
protein sequence )Recommended Name: Nascent polypeptide-associated complex subunit alpha Size : 215 amino acids; 23384 Da
Subunit : Interacts with TBP and JUN (By similarity). Part of the nascent polypeptide-associatedcomplex (NAC), consisting of NACA and BTF3. NAC associates with ribosomes through the BTF3subunit. Both subunits can contact nascent polypeptide chains. Interacts with ASFV protein H339R
Subcellular location : Cytoplasm. Nucleus. Note=Predominantly cytoplasmic. Also found in nucleus
Allergen : Causes an allergic reaction in human. Binds to IgE from atopic dermatitis (AD) patients.Identified as an IgE autoantigen in atopic dermatitis (AD) patients with severe skinmanifestations
Secondary accessions : Q3KQV4 Q53A18 Q53G46
Post-translational modifications:
Phosphorylation of Ser-43 by ILK during cell adhesion may promote nuclear localization.Phosphorylation of Thr-159 by GSK3B may promote proteasome mediated degradation (By similarity).Phosphorylated upon DNA damage, probably by ATM or ATR1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (4 alternative transcripts):
NP_001106672.1 NP_001106673.1 NP_001106674.1 NP_005585.1 ENSEMBL proteins: ENSP00000349212 ENSP00000377469 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for NACA: Assays for NACA:
Protein
Domains/ Families for NACA(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q13765 ProtoNet protein and cluster: Q13765
UniProtKB/Swiss-Prot: NACA_HUMAN, Q13765 Similarity : Belongs to the NAC-alpha familySimilarity : Contains 1 NAC-A/B (NAC-alpha/beta) domainSimilarity : Contains 1 UBA domain
Gene Function for NACA
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
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Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_001113201 Applied Biosystems Silencer ® siRNAs for NACA Sigma-Aldrich siRNA for NACA Sigma-Aldrich shRNA for NACA Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 4 ): NM_001113201                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 4 ): NM_001113201                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_001113201  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001113203 UniProtKB/Swiss-Prot: NACA_HUMAN, Q13765 Function : Prevents inappropriate targeting of non-secretory polypeptides to the endoplasmicreticulum (ER). Binds to nascent polypeptide chains as they emerge from the ribosome and blockstheir interaction with the signal recognition particle (SRP), which normally targets nascentsecretory peptides to the ER. Also reduces the inherent affinity of ribosomes for proteintranslocation sites in the ER membrane (M sites). May act as a specific coactivator for JUN,binding to DNA and stabilizing the interaction of JUN homodimers with target gene promoters
Genatlas biochemistry entry for NACA :nascent polypeptide-associated complex A/1.9.2,with two alternatively spliced isoform,acting as amuscle specific isoform 1 Gene Ontology (GO) molecular function term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0003677 DNA binding
IEA --
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Pathways & Interactions for NACA
(Pathways according to Invitrogen
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Millipore ,
Cell Signaling Technology ,
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KEGG
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Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for NACA 5/22 Interacting proteins for NACA (ENSP00000349212 3 Q13765 2 ) via UniProtKB, MINT, and/or STRING (see all 22
)About this table 4 Gene Ontology (GO) biological process terms (links to tree view) :
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PharmGKB )
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Transcripts for NACA(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_001113201 Sigma-Aldrich siRNA for NACA Sigma-Aldrich shRNA for NACA Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001113201 NM_001113202 NM_001113203 NM_005594
REFSEQ mRNAs for NACA gene (4 alternative transcripts): NM_001113201.1 NM_001113202.1 NM_001113203.1 NM_005594.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001113201 NM_001113202 NM_001113203 NM_005594
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 4 ): NM_001113201                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 4 ): NM_001113201                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_001113201  
Additional cDNA sequence: AF054187.1 AK090650.1 AK096699.1 AK223085.1 AK293209.1 AK311904.1 AY034001.1 AY605660.1 AY911673.1 BC105120.1 BC105122.1 BC106041.1 CR450295.1 CR595197.1 CR599103.1 CR600016.1 CR600421.1 CR600671.1 CR603573.1 CR613486.1 CR618000.1 CR619360.1 CR624198.1 CR626308.1 X80909.1
24/75 DOTS entries (see all 75
): DT.100889874 DT.91783886 DT.91733258 DT.97868164 DT.91840150 DT.91718355 DT.95228035 DT.452984 DT.121209295 DT.100889890 DT.91783876 DT.100889895 DT.121209326 DT.121209266 DT.121209229 DT.95228084 DT.121232286 DT.100889896 DT.92056217 DT.121209132 DT.95228072 DT.121209279 DT.86993099 DT.91807751
24/1512 AceView cDNA sequences (see all 1512
):AI002459 AI828699 BM783608 CD678540 BG319509 BE275217 BM543012 T54741 BM855187 CR624198 CB145420 BG759702 BU182929 BP870848 CR603573 BE277036 AA670063 BM462874 CR595197 CR619360 AU139596 BU846127 BI858408 BF857436
highest scoring ESTs for NACA :AF054187 AA082652 AA309058 AA730378 AK090650 AK096699 AL544444 AL558962 AL570572 AL580672
Unigene Cluster for NACA: Nascent polypeptide-associated complex alpha subunit Hs.505735 [show with all ESTs ] Unigene Representative Sequence: NM_001113203 GeneLoc Exon Structure 5/7 Alternative Splicing Database (ASD) splice patterns (SP) for NACA (see all 7
) ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b ^ 6a · 6b · 6c ^ 7a · 7b ^ 8 ^ 9a · 9b · 9c ^ 10 SP1 :           -   -       -   -   -           -     SP2 :     -   -     -   -       -   -   -               SP3 :       -     -   -       -   -   -               SP4 :     -   -     -   -                         SP5 :                                    
About this scheme ECgene alternative splicing isoforms for NACA 2 Ensembl transcripts including schematic representations : ENST00000356769
ENST00000393891
Expression for NACA
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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NACA expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for NACA 1 / 2 / 3
7 probe-sets matching NACA gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TCACAAGCAASOURCE GeneReport for Unigene cluster: Hs.505735 Expression variation in blood from EXPOLDB for NACA
UniProtKB/Swiss-Prot: NACA_HUMAN, Q13765 Tissue specificity : Ubiquitously expressed
Orthologs for NACA
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for NACA gene from 5/17 species (see all 17
)
About this table Species with no ortholog for NACA ENSEMBL Gene Tree for NACA Paralogs for NACA (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for NACA gene NACA3P 2 NACAD 2 NACA2 2
SNPs/Variants for NACA (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for NACA (up to first 250kb)
Disorders & Mutations for NACA
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 601234 2 Novoseek disease relationships for NACA gene
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Medical News for NACA (Possibly Related Articles in
Doctor's Guide )
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--
Publications for NACA (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/49 PubMed articles for NACA gene (see all 49
): NACA is a positive regulator of human erythroid-cell differentiation. (PubMed id 15784678) 1, 3, 4 Lopez S....Gomez S. (2005) Investigation of alpha nascent polypeptide-associated complex functions in a human CD8(+) T cell ex vivo expansion model using antisense oligonucleotides. (PubMed id 15196207) 1, 3, 4 Al-Shanti N.... Rowbottom A.W. (2004) Activation of the JNK-AP-1 signal transduction pathway is associated with pathogenesis and progression of human osteosarcomas. (PubMed id 12689679) 1, 3, 4 Papachristou D.J....Papavassiliou A.G. (2003) Emergence of young human genes after a burst of retroposition in primates. (PubMed id 16201836) 3, 4 Marques A.C.... Kaessmann H. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) The alpha-chain of the nascent polypeptide-associated complex binds to and regulates FADD function. (PubMed id 12684039) 3, 4 Stilo R.... Vito P. (2003) Novel products of the HuD, HuC, NNP-1 and alpha-internexin genes identified by autologous antibody screening of a pediatric neuroblastoma library. (PubMed id 12209604) 3, 4 Behrends U.... Mautner J.M. (2002) Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PubMed id 11042152) 3, 4 Zhang Q.H....Chen Z. (2000) The alpha and beta subunit of the nascent polypeptide-associated complex have distinct functions. (PubMed id 10982809) 3, 4 Beatrix B.... Wiedmann M. (2000) A protein complex required for signal-sequence-specific sorting and translocation. (PubMed id 8047162) 2, 3 Wiedmann B....Wiedmann M. (1994)
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Genome Databases showing NACA
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Specialized Databases showing NACA (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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