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Aliases for NAA40 Gene

Aliases for NAA40 Gene

  • N(Alpha)-Acetyltransferase 40, NatD Catalytic Subunit 2 3 5
  • N-Acetyltransferase 11 (GCN5-Related, Putative) 2 3
  • N-Acetyltransferase 11 2 4
  • NatD Catalytic Subunit 3 4
  • NAT11 3 4
  • N(Alpha)-Acetyltransferase 40, NatD Catalytic Subunit, Homolog (S. Cerevisiae) 2
  • N(Alpha)-Acetyltransferase 40, NatD Catalytic Subunit, Homolog 3
  • N-Alpha-Acetyltransferase 40, NatD Catalytic Subunit 3
  • N-Alpha Acetyl Transferase 40 3
  • EC 2.3.1.- 4
  • PATT1 3

External Ids for NAA40 Gene

Previous HGNC Symbols for NAA40 Gene

  • NAT11

Previous GeneCards Identifiers for NAA40 Gene

  • GC11P063706
  • GC11P060036

Summaries for NAA40 Gene

GeneCards Summary for NAA40 Gene

NAA40 (N(Alpha)-Acetyltransferase 40, NatD Catalytic Subunit) is a Protein Coding gene. Among its related pathways are Phase II conjugation. GO annotations related to this gene include N-acetyltransferase activity.

UniProtKB/Swiss-Prot for NAA40 Gene

  • Responsible for the acetylation of the N-terminal residues of histones H4 and H2A.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NAA40 Gene

Genomics for NAA40 Gene

Regulatory Elements for NAA40 Gene

Promoters for NAA40 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around NAA40 on UCSC Golden Path with GeneCards custom track

Genomic Location for NAA40 Gene

Chromosome:
11
Start:
63,938,959 bp from pter
End:
63,957,328 bp from pter
Size:
18,370 bases
Orientation:
Plus strand

Genomic View for NAA40 Gene

Genes around NAA40 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NAA40 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NAA40 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NAA40 Gene

Proteins for NAA40 Gene

  • Protein details for NAA40 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86UY6-NAA40_HUMAN
    Recommended name:
    N-alpha-acetyltransferase 40
    Protein Accession:
    Q86UY6
    Secondary Accessions:
    • B4DR03
    • B4DU10
    • Q5HYL5
    • Q9H897

    Protein attributes for NAA40 Gene

    Size:
    237 amino acids
    Molecular mass:
    27194 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAI46006.1; Type=Miscellaneous discrepancy; Note=Probable cloning artifact.; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for NAA40 Gene

    Alternative splice isoforms for NAA40 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for NAA40 Gene

Proteomics data for NAA40 Gene at MOPED

Post-translational modifications for NAA40 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for NAA40 Gene

Antibody Products

  • Santa Cruz Biotechnology (SCBT) Antibodies for NAA40

No data available for DME Specific Peptides for NAA40 Gene

Domains & Families for NAA40 Gene

Protein Domains for NAA40 Gene

Suggested Antigen Peptide Sequences for NAA40 Gene

Graphical View of Domain Structure for InterPro Entry

Q86UY6

UniProtKB/Swiss-Prot:

NAA40_HUMAN :
  • Contains 1 N-acetyltransferase domain.
  • Belongs to the acetyltransferase family. GNAT subfamily.
Domain:
  • Contains 1 N-acetyltransferase domain.
Family:
  • Belongs to the acetyltransferase family. GNAT subfamily.
genes like me logo Genes that share domains with NAA40: view

Function for NAA40 Gene

Molecular function for NAA40 Gene

UniProtKB/Swiss-Prot Function:
Responsible for the acetylation of the N-terminal residues of histones H4 and H2A.

Enzyme Numbers (IUBMB) for NAA40 Gene

genes like me logo Genes that share phenotypes with NAA40: view

Animal Model Products

No data available for Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for NAA40 Gene

Localization for NAA40 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NAA40 Gene COMPARTMENTS Subcellular localization image for NAA40 gene
Compartment Confidence
extracellular 2
cytosol 1
endoplasmic reticulum 1
mitochondrion 1
nucleus 1
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for NAA40 Gene

Pathways & Interactions for NAA40 Gene

SuperPathways for NAA40 Gene

Superpath Contained pathways
1 Phase II conjugation
genes like me logo Genes that share pathways with NAA40: view

Pathways by source for NAA40 Gene

1 BioSystems pathway for NAA40 Gene

Interacting Proteins for NAA40 Gene

Gene Ontology (GO) - Biological Process for NAA40 Gene

None

No data available for SIGNOR curated interactions for NAA40 Gene

Drugs & Compounds for NAA40 Gene

No Compound Related Data Available

Transcripts for NAA40 Gene

Unigene Clusters for NAA40 Gene

N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NAA40 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3a · 3b · 3c ^ 4a · 4b ^ 5a · 5b ^ 6 ^ 7 ^ 8a · 8b
SP1: - - - - -
SP2: - -
SP3: - - - -
SP4: - - - - - -
SP5: - - - - - - - -
SP6: - -
SP7:
SP8:

Relevant External Links for NAA40 Gene

GeneLoc Exon Structure for
NAA40
ECgene alternative splicing isoforms for
NAA40

Expression for NAA40 Gene

mRNA expression in normal human tissues for NAA40 Gene

Protein differential expression in normal tissues from HIPED for NAA40 Gene

This gene is overexpressed in Fetal heart (42.0) and Fetal testis (21.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for NAA40 Gene



SOURCE GeneReport for Unigene cluster for NAA40 Gene Hs.523753

genes like me logo Genes that share expression patterns with NAA40: view

Protein tissue co-expression partners for NAA40 Gene

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for NAA40 Gene

Orthologs for NAA40 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for NAA40 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia NAA40 36
  • 100 (a)
OneToOne
NAA40 35
  • 99.72 (n)
  • 100 (a)
cow
(Bos Taurus)
Mammalia NAT11 36
  • 98 (a)
OneToOne
NAA40 35
  • 91.98 (n)
  • 98.31 (a)
dog
(Canis familiaris)
Mammalia NAA40 35
  • 92.95 (n)
  • 98.56 (a)
NAA40 36
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Naa40 36
  • 99 (a)
OneToOne
Naa40 16
Naa40 35
  • 91.42 (n)
  • 98.73 (a)
oppossum
(Monodelphis domestica)
Mammalia NAA40 36
  • 55 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia NAA40 36
  • 88 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Naa40 35
  • 91.7 (n)
  • 97.89 (a)
chicken
(Gallus gallus)
Aves NAA40 35
  • 80.57 (n)
  • 86.81 (a)
NAA40 36
  • 78 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia NAA40 36
  • 89 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.16373 35
tropical clawed frog
(Silurana tropicalis)
Amphibia naa40 35
  • 73.87 (n)
  • 81.36 (a)
Str.2069 35
zebrafish
(Danio rerio)
Actinopterygii naa40 35
  • 75 (n)
  • 84.75 (a)
naa40 36
  • 78 (a)
OneToMany
naa40 36
  • 84 (a)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP008428 35
  • 51.55 (n)
  • 37.7 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG7593 36
  • 34 (a)
OneToOne
CG7593 35
  • 49.18 (n)
  • 36.61 (a)
worm
(Caenorhabditis elegans)
Secernentea Y38A10A.7 36
  • 25 (a)
OneToOne
Y38A10A.7 35
  • 44.79 (n)
  • 31.29 (a)
thale cress
(Arabidopsis thaliana)
eudicotyledons AT1G18335 35
  • 45.93 (n)
  • 37.8 (a)
rice
(Oryza sativa)
Liliopsida Os05g0387800 35
  • 46.06 (n)
  • 38.19 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 50 (a)
OneToOne
Species with no ortholog for NAA40:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for NAA40 Gene

ENSEMBL:
Gene Tree for NAA40 (if available)
TreeFam:
Gene Tree for NAA40 (if available)

Paralogs for NAA40 Gene

Pseudogenes.org Pseudogenes for NAA40 Gene

genes like me logo Genes that share paralogs with NAA40: view

No data available for Paralogs for NAA40 Gene

Variants for NAA40 Gene

Sequence variations from dbSNP and Humsavar for NAA40 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs873928 -- 63,939,002(+) GGGCC(A/C/G)TCCGC upstream-variant-2KB, reference, synonymous-codon, utr-variant-5-prime
rs1059201 -- 63,957,022(+) TTTTT(G/T)TGTTT utr-variant-3-prime
rs1059202 -- 63,957,024(+) TTTGT(G/T)TTTTG utr-variant-3-prime
rs1059203 -- 63,957,029(+) GTTTT(G/T)TTTGT utr-variant-3-prime
rs1059205 -- 63,957,195(+) TGATA(C/T)ANNNN utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for NAA40 Gene

Variant ID Type Subtype PubMed ID
dgv1155n71 CNV Loss 21882294
dgv1156n71 CNV Loss 21882294
nsv897639 CNV Loss 21882294
nsv825941 CNV Gain 20364138

Variation tolerance for NAA40 Gene

Residual Variation Intolerance Score: 33.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.02; 37.17% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for NAA40 Gene

HapMap Linkage Disequilibrium report
NAA40

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NAA40 Gene

Disorders for NAA40 Gene

Relevant External Links for NAA40

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NAA40

No disorders were found for NAA40 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NAA40 Gene

Publications for NAA40 Gene

  1. The human N-alpha-acetyltransferase 40 (hNaa40p/hNatD) is conserved from yeast and N-terminally acetylates histones H2A and H4. (PMID: 21935442) Hole K. … Arnesen T. (PLoS ONE 2011) 2 3 4 67
  2. A synopsis of eukaryotic Nalpha-terminal acetyltransferases: nomenclature, subunits and substrates. (PMID: 19660095) Polevoda B. … Sherman F. (BMC Proc. 2009) 2 3
  3. Panorama of ancient metazoan macromolecular complexes. (PMID: 26344197) Wan C. … Emili A. (Nature 2015) 3
  4. The central role of EED in the orchestration of polycomb group complexes. (PMID: 24457600) Cao Q. … Chinnaiyan A.M. (Nat Commun 2014) 3
  5. Structure of Patt1 human proapoptotic histone acetyltransferase. (PMID: 24248912) JA9drzejewski R.P. … KaA_mierkiewicz R. (J Mol Model 2013) 3

Products for NAA40 Gene

Sources for NAA40 Gene

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