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Aliases for N4BP2L2-IT2 Gene

Subcategory (RNA class) for N4BP2L2-IT2 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for N4BP2L2-IT2 Gene

  • N4BPL2 Intronic Transcript 2 2 3 5
  • N4BPL2 Intronic Transcript 2 (Non-Protein Coding) 2 3
  • CG030 3

External Ids for N4BP2L2-IT2 Gene

ORGUL Members for N4BP2L2-IT2 Gene

Previous GeneCards Identifiers for N4BP2L2-IT2 Gene

  • GC13M033079
  • GC13M032535
  • GC13M032540

Summaries for N4BP2L2-IT2 Gene

GeneCards Summary for N4BP2L2-IT2 Gene

N4BP2L2-IT2 (N4BPL2 Intronic Transcript 2) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for N4BP2L2-IT2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for N4BP2L2-IT2 Gene

Genomics for N4BP2L2-IT2 Gene

GeneHancer (GH) Regulatory Elements for N4BP2L2-IT2 Gene

Promoters and enhancers for N4BP2L2-IT2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I032503 Enhancer 0.7 ENCODE 0.4 +5.1 5116 2 SOX13 USF1 CEBPG RARA GATA3 NR2F6 GATAD2A PAF1 RXRA CEBPB ATP8A2P2 N4BP2L1 N4BP2L2-IT2 MINOS1P1 N4BP2L2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around N4BP2L2-IT2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for N4BP2L2-IT2 Gene

Genomic Locations for N4BP2L2-IT2 Gene
chr13:32,504,506-32,509,395
(GRCh38/hg38)
Size:
4,890 bases
Orientation:
Minus strand
chr13:33,078,643-33,083,532
(GRCh37/hg19)

Genomic View for N4BP2L2-IT2 Gene

Genes around N4BP2L2-IT2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
N4BP2L2-IT2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for N4BP2L2-IT2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for N4BP2L2-IT2 Gene

Proteins for N4BP2L2-IT2 Gene

Post-translational modifications for N4BP2L2-IT2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for N4BP2L2-IT2 Gene

Domains & Families for N4BP2L2-IT2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for N4BP2L2-IT2 Gene

Function for N4BP2L2-IT2 Gene

Phenotypes for N4BP2L2-IT2 Gene

GenomeRNAi human phenotypes for N4BP2L2-IT2:
genes like me logo Genes that share phenotypes with N4BP2L2-IT2: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for N4BP2L2-IT2 Gene

Localization for N4BP2L2-IT2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for N4BP2L2-IT2 Gene

Pathways & Interactions for N4BP2L2-IT2 Gene

SuperPathways for N4BP2L2-IT2 Gene

No Data Available

Interacting Proteins for N4BP2L2-IT2 Gene

Gene Ontology (GO) - Biological Process for N4BP2L2-IT2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for N4BP2L2-IT2 Gene

Drugs & Compounds for N4BP2L2-IT2 Gene

No Compound Related Data Available

Transcripts for N4BP2L2-IT2 Gene

mRNA/cDNA for N4BP2L2-IT2 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for N4BP2L2-IT2 Gene

N4BPL2 intronic transcript 2 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for N4BP2L2-IT2 Gene

No ASD Table

Relevant External Links for N4BP2L2-IT2 Gene

GeneLoc Exon Structure for
N4BP2L2-IT2
ECgene alternative splicing isoforms for
N4BP2L2-IT2

Expression for N4BP2L2-IT2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for N4BP2L2-IT2 Gene

SOURCE GeneReport for Unigene cluster for N4BP2L2-IT2 Gene:

Hs.658751
genes like me logo Genes that share expression patterns with N4BP2L2-IT2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for N4BP2L2-IT2 Gene

Orthologs for N4BP2L2-IT2 Gene

Evolution for N4BP2L2-IT2 Gene

ENSEMBL:
Gene Tree for N4BP2L2-IT2 (if available)
TreeFam:
Gene Tree for N4BP2L2-IT2 (if available)

No data available for Orthologs for N4BP2L2-IT2 Gene

Paralogs for N4BP2L2-IT2 Gene

No data available for Paralogs for N4BP2L2-IT2 Gene

Variants for N4BP2L2-IT2 Gene

Sequence variations from dbSNP and Humsavar for N4BP2L2-IT2 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000241441 -- 32,506,745(-) A/G non_coding_transcript_variant
rs1000542218 -- 32,509,510(-) C/G upstream_transcript_variant
rs1001024760 -- 32,511,201(-) T/C upstream_transcript_variant
rs1001136217 -- 32,505,055(-) C/T non_coding_transcript_variant
rs1001208853 -- 32,506,454(-) T/C non_coding_transcript_variant

Additional Variant Information for N4BP2L2-IT2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
N4BP2L2-IT2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for N4BP2L2-IT2 Gene

Disorders for N4BP2L2-IT2 Gene

Additional Disease Information for N4BP2L2-IT2

No disorders were found for N4BP2L2-IT2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for N4BP2L2-IT2 Gene

Publications for N4BP2L2-IT2 Gene

  1. Generation of an integrated transcription map of the BRCA2 region on chromosome 13q12-q13. (PMID: 8812419) Couch FJ … Simard J (Genomics 1996) 2 3 58

Products for N4BP2L2-IT2 Gene

Sources for N4BP2L2-IT2 Gene

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