Free for academic non-profit institutions. Other users need a Commercial license

Aliases for N4BP2L2-IT2 Gene

Subcategory (RNA class) for N4BP2L2-IT2 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for N4BP2L2-IT2 Gene

  • N4BPL2 Intronic Transcript 2 2 3 5
  • N4BPL2 Intronic Transcript 2 (Non-Protein Coding) 2 3
  • Uncharacterized CG030 3
  • CG030 3

External Ids for N4BP2L2-IT2 Gene

ORGUL Members for N4BP2L2-IT2 Gene

Previous GeneCards Identifiers for N4BP2L2-IT2 Gene

  • GC13M033079

Summaries for N4BP2L2-IT2 Gene

GeneCards Summary for N4BP2L2-IT2 Gene

N4BP2L2-IT2 (N4BPL2 Intronic Transcript 2) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for N4BP2L2-IT2 Gene

Genomics for N4BP2L2-IT2 Gene

Regulatory Elements for N4BP2L2-IT2 Gene

Enhancers for N4BP2L2-IT2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F032503 0.7 ENCODE 0.4 +5.1 5116 2.0 PAF1 SOX13 GATAD2A CEBPB CEBPG RARA GATA3 ZGPAT CEBPA NR2F6 ATP8A2P2 N4BP2L1 MINOS1P1 N4BP2L2-IT2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around N4BP2L2-IT2 on UCSC Golden Path with GeneCards custom track

Genomic Location for N4BP2L2-IT2 Gene

Chromosome:
13
Start:
32,504,506 bp from pter
End:
32,509,395 bp from pter
Size:
4,890 bases
Orientation:
Minus strand

Genomic View for N4BP2L2-IT2 Gene

Genes around N4BP2L2-IT2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
N4BP2L2-IT2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for N4BP2L2-IT2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for N4BP2L2-IT2 Gene

Proteins for N4BP2L2-IT2 Gene

Post-translational modifications for N4BP2L2-IT2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for N4BP2L2-IT2 Gene

Domains & Families for N4BP2L2-IT2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for N4BP2L2-IT2 Gene

Function for N4BP2L2-IT2 Gene

Phenotypes for N4BP2L2-IT2 Gene

GenomeRNAi human phenotypes for N4BP2L2-IT2:
genes like me logo Genes that share phenotypes with N4BP2L2-IT2: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for N4BP2L2-IT2 Gene

Localization for N4BP2L2-IT2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for N4BP2L2-IT2 Gene

Pathways & Interactions for N4BP2L2-IT2 Gene

SuperPathways for N4BP2L2-IT2 Gene

No Data Available

Interacting Proteins for N4BP2L2-IT2 Gene

Gene Ontology (GO) - Biological Process for N4BP2L2-IT2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for N4BP2L2-IT2 Gene

Transcripts for N4BP2L2-IT2 Gene

mRNA/cDNA for N4BP2L2-IT2 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for N4BP2L2-IT2 Gene

N4BPL2 intronic transcript 2 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for N4BP2L2-IT2 Gene

No ASD Table

Relevant External Links for N4BP2L2-IT2 Gene

GeneLoc Exon Structure for
N4BP2L2-IT2
ECgene alternative splicing isoforms for
N4BP2L2-IT2

Expression for N4BP2L2-IT2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for N4BP2L2-IT2 Gene

SOURCE GeneReport for Unigene cluster for N4BP2L2-IT2 Gene:

Hs.658751
genes like me logo Genes that share expression patterns with N4BP2L2-IT2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for N4BP2L2-IT2 Gene

Orthologs for N4BP2L2-IT2 Gene

Evolution for N4BP2L2-IT2 Gene

ENSEMBL:
Gene Tree for N4BP2L2-IT2 (if available)
TreeFam:
Gene Tree for N4BP2L2-IT2 (if available)

No data available for Orthologs for N4BP2L2-IT2 Gene

Paralogs for N4BP2L2-IT2 Gene

No data available for Paralogs for N4BP2L2-IT2 Gene

Variants for N4BP2L2-IT2 Gene

Sequence variations from dbSNP and Humsavar for N4BP2L2-IT2 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs10492398 -- 32,506,763(+) AGGGC(C/T)GGAAT intron-variant, nc-transcript-variant, utr-variant-3-prime
rs112316390 -- 32,509,473(+) TGACT(A/G)TTTTA intron-variant, upstream-variant-2KB, utr-variant-3-prime
rs112673139 -- 32,510,973(+) CCAAA(A/T)TAAAA intron-variant, upstream-variant-2KB, utr-variant-3-prime
rs113197590 -- 32,509,237(+) GAGCA(C/T)TGATT intron-variant, nc-transcript-variant, utr-variant-3-prime
rs113973194 -- 32,510,655(+) CACCA(C/T)GCCCA intron-variant, upstream-variant-2KB, utr-variant-3-prime

Relevant External Links for N4BP2L2-IT2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
N4BP2L2-IT2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for N4BP2L2-IT2 Gene

Disorders for N4BP2L2-IT2 Gene

Relevant External Links for N4BP2L2-IT2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
N4BP2L2-IT2

No disorders were found for N4BP2L2-IT2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for N4BP2L2-IT2 Gene

Publications for N4BP2L2-IT2 Gene

  1. Generation of an integrated transcription map of the BRCA2 region on chromosome 13q12-q13. (PMID: 8812419) Couch F.J. … Simard J. (Genomics 1996) 2 3 64

Products for N4BP2L2-IT2 Gene

Sources for N4BP2L2-IT2 Gene

Content
Loading form....