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Aliases for N4BP2 Gene

Aliases for N4BP2 Gene

  • NEDD4 Binding Protein 2 2 3
  • BCL-3-Binding Protein 3 4
  • B3BP 3 4
  • NEDD4-Binding Protein 2 3
  • BCL-3 Binding Protein 2
  • EC 3.-.-.- 4
  • KIAA1413 4

External Ids for N4BP2 Gene

Summaries for N4BP2 Gene

Entrez Gene Summary for N4BP2 Gene

  • This gene encodes a protein containing a polynucleotide kinase domain (PNK) near the N-terminal region, and a Small MutS Related (Smr) domain near the C-terminal region. The encoded protein can bind to both B-cell leukemia/lymphoma 3 (BCL-3) and neural precursor cell expressed, developmentally downregulated 4, (Nedd4) proteins. This protein binds and hydrolyzes ATP, may function as a 5'-polynucleotide kinase, and has the capacity to be a ubiquitylation substrate. This protein may play a role in transcription-coupled DNA repair or genetic recombination. [provided by RefSeq, Jul 2008]

GeneCards Summary for N4BP2 Gene

N4BP2 (NEDD4 Binding Protein 2) is a Protein Coding gene. GO annotations related to this gene include endonuclease activity and ATP-dependent polydeoxyribonucleotide 5-hydroxyl-kinase activity. An important paralog of this gene is N4BP2L1.

UniProtKB/Swiss-Prot for N4BP2 Gene

  • Has 5-polynucleotide kinase and nicking endonuclease activity. May play a role in DNA repair or recombination.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for N4BP2 Gene

Genomics for N4BP2 Gene

Genomic Location for N4BP2 Gene

Start:
40,056,826 bp from pter
End:
40,158,252 bp from pter
Size:
101,427 bases
Orientation:
Plus strand

Genomic View for N4BP2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for N4BP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for N4BP2 Gene

Regulatory Elements for N4BP2 Gene

Proteins for N4BP2 Gene

  • Protein details for N4BP2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86UW6-N4BP2_HUMAN
    Recommended name:
    NEDD4-binding protein 2
    Protein Accession:
    Q86UW6
    Secondary Accessions:
    • A0AVR3
    • Q9NVK2
    • Q9P2D4

    Protein attributes for N4BP2 Gene

    Size:
    1770 amino acids
    Molecular mass:
    198801 Da
    Quaternary structure:
    • Binds NEDD4 (By similarity). Binds BCL3 and CREBBP.

    Three dimensional structures from OCA and Proteopedia for N4BP2 Gene

    Alternative splice isoforms for N4BP2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for N4BP2 Gene

Proteomics data for N4BP2 Gene at MOPED

Post-translational modifications for N4BP2 Gene

  • Ubiquitinated; this targets the protein for degradation by the proteasome.
  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys20, Lys414, Lys453, Lys1160, Lys1247, Lys1440, and Lys1459

Other Protein References for N4BP2 Gene

No data available for DME Specific Peptides for N4BP2 Gene

Domains for N4BP2 Gene

Suggested Antigen Peptide Sequences for N4BP2 Gene

Graphical View of Domain Structure for InterPro Entry

Q86UW6

UniProtKB/Swiss-Prot:

N4BP2_HUMAN
Domain:
  • The Smr domain has nicking endonuclease activity, but no significant double strand cleavage or exonuclease activity:
    • Q86UW6
  • Contains 1 CUE domain.:
    • Q86UW6
  • Contains 1 Smr domain.:
    • Q86UW6
genes like me logo Genes that share domains with N4BP2: view

No data available for Gene Families for N4BP2 Gene

Function for N4BP2 Gene

Molecular function for N4BP2 Gene

UniProtKB/Swiss-Prot Function: Has 5-polynucleotide kinase and nicking endonuclease activity. May play a role in DNA repair or recombination.

Enzyme Numbers (IUBMB) for N4BP2 Gene

Gene Ontology (GO) - Molecular Function for N4BP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004519 endonuclease activity IDA 12730195
GO:0005515 protein binding IPI 12730195
GO:0005524 ATP binding IDA 12730195
GO:0046404 ATP-dependent polydeoxyribonucleotide 5-hydroxyl-kinase activity IDA 12730195
genes like me logo Genes that share ontologies with N4BP2: view

miRNA for N4BP2 Gene

miRTarBase miRNAs that target N4BP2

No data available for Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for N4BP2 Gene

Localization for N4BP2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for N4BP2 Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for N4BP2 Gene COMPARTMENTS Subcellular localization image for N4BP2 gene
Compartment Confidence
nucleus 3
cytosol 2
cytoskeleton 1
mitochondrion 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for N4BP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005829 cytosol IEA --
genes like me logo Genes that share ontologies with N4BP2: view

Pathways for N4BP2 Gene

SuperPathways for N4BP2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for N4BP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016310 phosphorylation IDA 12730195
GO:0090305 nucleic acid phosphodiester bond hydrolysis IDA 12730195
genes like me logo Genes that share ontologies with N4BP2: view

No data available for Pathways by source for N4BP2 Gene

Transcripts for N4BP2 Gene

Unigene Clusters for N4BP2 Gene

NEDD4 binding protein 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for N4BP2 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11a · 11b ^ 12 ^ 13 ^ 14a · 14b ^ 15 ^ 16 ^ 17a · 17b ^ 18 ^ 19 ^ 20
SP1: - -
SP2:
SP3: -
SP4:
SP5:
SP6: - - -

Relevant External Links for N4BP2 Gene

GeneLoc Exon Structure for
N4BP2
ECgene alternative splicing isoforms for
N4BP2

Expression for N4BP2 Gene

mRNA expression in normal human tissues for N4BP2 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for N4BP2 Gene

SOURCE GeneReport for Unigene cluster for N4BP2 Gene Hs.391463

genes like me logo Genes that share expressions with N4BP2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for N4BP2 Gene

Orthologs for N4BP2 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for N4BP2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia N4BP2 35
  • 99.66 (n)
  • 99.6 (a)
N4BP2 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia N4BP2 35
  • 86.97 (n)
  • 81.56 (a)
N4BP2 36
  • 81 (a)
OneToOne
dog
(Canis familiaris)
Mammalia N4BP2 35
  • 88.4 (n)
  • 82.69 (a)
N4BP2 36
  • 82 (a)
OneToOne
mouse
(Mus musculus)
Mammalia N4bp2 35
  • 78.58 (n)
  • 72.18 (a)
N4bp2 16
N4bp2 36
  • 72 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia N4BP2 36
  • 44 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia N4bp2 35
  • 79.31 (n)
  • 72.99 (a)
chicken
(Gallus gallus)
Aves N4BP2 35
  • 58.37 (n)
  • 47.63 (a)
N4BP2 36
  • 36 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia N4BP2 36
  • 35 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.20151 35
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.3753 35
zebrafish
(Danio rerio)
Actinopterygii n4bp2 36
  • 29 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG7139 36
  • 20 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes -- 38
Species with no ortholog for N4BP2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for N4BP2 Gene

ENSEMBL:
Gene Tree for N4BP2 (if available)
TreeFam:
Gene Tree for N4BP2 (if available)

Paralogs for N4BP2 Gene

Paralogs for N4BP2 Gene

Selected SIMAP similar genes for N4BP2 Gene using alignment to 6 proteins:

Pseudogenes.org Pseudogenes for N4BP2 Gene

genes like me logo Genes that share paralogs with N4BP2: view

Variants for N4BP2 Gene

Sequence variations from dbSNP and Humsavar for N4BP2 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs1995 -- 40,158,088(-) TACTG(C/T)CTGAA utr-variant-3-prime
rs793993 -- 40,111,808(-) tgaaa(G/T)cccat intron-variant
rs793994 -- 40,111,432(-) gagac(A/G)gcaga intron-variant
rs793995 -- 40,111,068(-) CAAAT(A/T)TACAC intron-variant
rs793996 -- 40,110,992(-) TACCT(C/T)TCTTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for N4BP2 Gene

Variant ID Type Subtype PubMed ID
nsv461341 CNV Gain 19166990
nsv878955 CNV Loss 21882294
esv29217 CNV Loss 19812545
nsv878956 CNV Gain 21882294

Relevant External Links for N4BP2 Gene

HapMap Linkage Disequilibrium report
N4BP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for N4BP2 Gene

Disorders for N4BP2 Gene

Relevant External Links for N4BP2

Genetic Association Database (GAD)
N4BP2
genes like me logo Genes that share disorders with N4BP2: view

No data available for UniProtKB/Swiss-Prot for N4BP2 Gene

Publications for N4BP2 Gene

  1. Prediction of the coding sequences of unidentified human genes. XVI. The complete sequences of 150 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10718198) Nagase T. … Ohara O. (DNA Res. 2000) 2 3 4
  2. Identification of developmentally expressed proteins that functionally interact with Nedd4 ubiquitin ligase. (PMID: 11717310) Murillas R. … Kuehn M.R. (J. Biol. Chem. 2002) 2 3
  3. Haplotype of gene Nedd4 binding protein 2 associated with sporadic nasopharyngeal carcinoma in the Southern Chinese population. (PMID: 17626640) Zheng M.Z. … Zeng Y.X. (J Transl Med 2007) 3 23
  4. Identification and characterization of BCL-3-binding protein: implications for transcription and DNA repair or recombination. (PMID: 12730195) Watanabe N. … Fujita T. (J. Biol. Chem. 2003) 3 4
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4

Products for N4BP2 Gene

Sources for N4BP2 Gene

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