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Aliases for MZF1 Gene

Aliases for MZF1 Gene

  • Myeloid Zinc Finger 1 2 3 5
  • Zinc Finger Protein 42 (Myeloid-Specific Retinoic Acid-Responsive) 2 3
  • Zinc Finger And SCAN Domain-Containing Protein 6 3 4
  • ZSCAN6 3 4
  • ZNF42 3 4
  • MZF-1 3 4
  • Zinc Finger Protein 42 4
  • MZF1B 3
  • ZFP98 3
  • MZF 4

External Ids for MZF1 Gene

Previous HGNC Symbols for MZF1 Gene

  • ZNF42

Previous GeneCards Identifiers for MZF1 Gene

  • GC19M063766
  • GC19M059073
  • GC19M055383

Summaries for MZF1 Gene

GeneCards Summary for MZF1 Gene

MZF1 (Myeloid Zinc Finger 1) is a Protein Coding gene. GO annotations related to this gene include transcription factor activity, sequence-specific DNA binding and RNA polymerase II core promoter proximal region sequence-specific DNA binding. An important paralog of this gene is ZSCAN10.

UniProtKB/Swiss-Prot for MZF1 Gene

  • Binds to target promoter DNA and functions as transcription regulator. Regulates transcription from the PADI1 and CDH2 promoter. May be one regulator of transcriptional events during hemopoietic development.

Gene Wiki entry for MZF1 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MZF1 Gene

Genomics for MZF1 Gene

Regulatory Elements for MZF1 Gene

Enhancers for MZF1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F058517 0.9 FANTOM5 ENCODE 23.2 +54.7 54731 4.9 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF263 ZNF324B CENPBD1P1 ZNF134 LOC105372483 TRIM28 ZNF549 MZF1 ZNF324 ZBTB45 ZNF584
GH19F057583 0.5 ENCODE 21.3 +990.5 990467 1.4 TBP CBX3 ZNF76 ARID4B RAD21 ZBTB40 ZEB1 ETS1 GLIS2 ZNF416 ZNF549 ZNF17 ZIK1 LOC100128398 ZNF324B MZF1 ZSCAN22 ZNF606 ZNF544 ZNF551
GH19F058325 0.2 ENCODE 13.3 +247.6 247569 3.6 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF134 ZNF17 ZNF549 ZNF606 ZNF773 ZNF256 ZNF417 ZNF551 ZNF548 ZNF211
GH19F058227 1 ENCODE 13.3 +345.5 345508 2.3 HDGF ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 ZNF143 SP3 LOC105372483 ZNF606 LOC100128398 ZSCAN18 LOC105372482 ZNF544 ZNF549 ZNF17 RN7SL526P ZNF418
GH19F057681 0.5 ENCODE 13.2 +892.3 892293 1.6 PKNOX1 ATF1 CREB3L1 ARID4B SIN3A GLI4 DMAP1 ETS1 YY1 ELK1 ZNF17 ZNF549 ZNF134 ZNF773 ZNF211 ZNF544 ZNF551 ZNF749 ZNF606 ZNF543
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MZF1 on UCSC Golden Path with GeneCards custom track

Promoters for MZF1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001819089 -1261 1800 HDGF PKNOX1 CREB3L1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1
ENSR00000349329 1339 1801 HDGF PKNOX1 ARNT CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1

Genomic Location for MZF1 Gene

Chromosome:
19
Start:
58,561,917 bp from pter
End:
58,574,439 bp from pter
Size:
12,523 bases
Orientation:
Minus strand

Genomic View for MZF1 Gene

Genes around MZF1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MZF1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MZF1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MZF1 Gene

Proteins for MZF1 Gene

  • Protein details for MZF1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P28698-MZF1_HUMAN
    Recommended name:
    Myeloid zinc finger 1
    Protein Accession:
    P28698
    Secondary Accessions:
    • M0QXU0
    • Q7Z729
    • Q96I71
    • Q9NRY0
    • Q9UBW2

    Protein attributes for MZF1 Gene

    Size:
    734 amino acids
    Molecular mass:
    82055 Da
    Quaternary structure:
    • Homodimer.

    Three dimensional structures from OCA and Proteopedia for MZF1 Gene

    Alternative splice isoforms for MZF1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for MZF1 Gene

Post-translational modifications for MZF1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Antibody Products

  • Santa Cruz Biotechnology (SCBT) Antibodies for MZF1

No data available for DME Specific Peptides for MZF1 Gene

Domains & Families for MZF1 Gene

Gene Families for MZF1 Gene

Suggested Antigen Peptide Sequences for MZF1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P28698

UniProtKB/Swiss-Prot:

MZF1_HUMAN :
  • Contains 1 SCAN box domain.
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
  • Contains 13 C2H2-type zinc fingers.
Domain:
  • Contains 1 SCAN box domain.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Similarity:
  • Contains 13 C2H2-type zinc fingers.
genes like me logo Genes that share domains with MZF1: view

Function for MZF1 Gene

Molecular function for MZF1 Gene

UniProtKB/Swiss-Prot Function:
Binds to target promoter DNA and functions as transcription regulator. Regulates transcription from the PADI1 and CDH2 promoter. May be one regulator of transcriptional events during hemopoietic development.
UniProtKB/Swiss-Prot Induction:
By retinoic acid.

Gene Ontology (GO) - Molecular Function for MZF1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding IDA 7579328
GO:0001077 transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding IDA 7579328
GO:0001078 transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding IDA 7579328
GO:0003676 nucleic acid binding IEA --
GO:0003677 DNA binding IEA --
genes like me logo Genes that share ontologies with MZF1: view
genes like me logo Genes that share phenotypes with MZF1: view

Animal Models for MZF1 Gene

MGI Knock Outs for MZF1:

Animal Model Products

Transcription Factor Targets for MZF1 Gene

Selected GeneGlobe predicted Target genes for MZF1

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , miRNA and HOMER Transcription for MZF1 Gene

Localization for MZF1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MZF1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for MZF1 Gene COMPARTMENTS Subcellular localization image for MZF1 gene
Compartment Confidence
nucleus 5

Gene Ontology (GO) - Cellular Components for MZF1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA,IBA --
genes like me logo Genes that share ontologies with MZF1: view

Pathways & Interactions for MZF1 Gene

SuperPathways for MZF1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MZF1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000122 negative regulation of transcription from RNA polymerase II promoter IDA 7579328
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA,IDA 15541732
GO:0006366 transcription from RNA polymerase II promoter IEA --
GO:0045944 positive regulation of transcription from RNA polymerase II promoter IDA 7579328
genes like me logo Genes that share ontologies with MZF1: view

No data available for Pathways by source and SIGNOR curated interactions for MZF1 Gene

Drugs & Compounds for MZF1 Gene

(1) Drugs for MZF1 Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials

(2) Additional Compounds for MZF1 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with MZF1: view

Transcripts for MZF1 Gene

Unigene Clusters for MZF1 Gene

Myeloid zinc finger 1:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MZF1 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b · 4c · 4d ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8a · 8b
SP1: - - - - -
SP2: - - -
SP3: - - - -
SP4: -
SP5: - - - - -
SP6:
SP7:

Relevant External Links for MZF1 Gene

GeneLoc Exon Structure for
MZF1
ECgene alternative splicing isoforms for
MZF1

Expression for MZF1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MZF1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

NURSA nuclear receptor signaling pathways regulating expression of MZF1 Gene:

MZF1

SOURCE GeneReport for Unigene cluster for MZF1 Gene:

Hs.399810

mRNA Expression by UniProt/SwissProt for MZF1 Gene:

P28698-MZF1_HUMAN
Tissue specificity: Preferentially expressed in differentiating myeloid cells. Detected in osteoblasts.
genes like me logo Genes that share expression patterns with MZF1: view

Primer Products

No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression and Protein tissue co-expression partners for MZF1 Gene

Orthologs for MZF1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for MZF1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MZF1 34 35
  • 97.27 (n)
cow
(Bos Taurus)
Mammalia MZF1 34 35
  • 83.42 (n)
mouse
(Mus musculus)
Mammalia Mzf1 34 16 35
  • 82.76 (n)
rat
(Rattus norvegicus)
Mammalia Mzf1 34
  • 82.76 (n)
dog
(Canis familiaris)
Mammalia MZF1 34 35
  • 82.15 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 36 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii -- 34
Species where no ortholog for MZF1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MZF1 Gene

ENSEMBL:
Gene Tree for MZF1 (if available)
TreeFam:
Gene Tree for MZF1 (if available)

Paralogs for MZF1 Gene

Paralogs for MZF1 Gene

(365) SIMAP similar genes for MZF1 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with MZF1: view

Variants for MZF1 Gene

Sequence variations from dbSNP and Humsavar for MZF1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs10411567 -- 58,564,900(+) TGTGT(G/T)TGTTT intron-variant
rs10411568 -- 58,564,902(+) TGTGT(G/T)TTTTT intron-variant
rs10411600 -- 58,564,941(+) tttga(A/G)actga intron-variant
rs10414088 -- 58,568,476(+) aggca(C/G)tttcc intron-variant
rs10414293 -- 58,568,566(+) AAAAa(A/G)aattc intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MZF1 Gene

Variant ID Type Subtype PubMed ID
dgv3687n100 CNV gain 25217958
dgv3688n100 CNV gain 25217958
nsv1057077 CNV gain 25217958
nsv1057206 CNV gain 25217958
nsv1114041 CNV deletion 24896259
nsv1160670 CNV deletion 26073780
nsv515731 CNV gain+loss 19592680
nsv828657 CNV gain 20364138
nsv952156 CNV deletion 24416366

Variation tolerance for MZF1 Gene

Residual Variation Intolerance Score: 96.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 11.55; 93.00% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for MZF1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MZF1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MZF1 Gene

Disorders for MZF1 Gene

Relevant External Links for MZF1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MZF1

No disorders were found for MZF1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MZF1 Gene

Publications for MZF1 Gene

  1. A retinoic acid-responsive human zinc finger gene, MZF-1, preferentially expressed in myeloid cells. (PMID: 1860835) Hromas R. … Kaushansky K. (J. Biol. Chem. 1991) 2 3 4 22 64
  2. Crucial roles of MZF1 and Sp1 in the transcriptional regulation of the peptidylarginine deiminase type I gene (PADI1) in human keratinocytes. (PMID: 17851584) Dong S. … Takahara H. (J. Invest. Dermatol. 2008) 3 4 22 64
  3. Structure of the SCAN domain from the tumor suppressor protein MZF1. (PMID: 16950398) Peterson F.C. … Volkman B.F. (J. Mol. Biol. 2006) 3 4 22 64
  4. Sp1/Sp3 and the myeloid zinc finger gene MZF1 regulate the human N- cadherin promoter in osteoblasts. (PMID: 15541732) Le Mee S. … Marie P.J. (Exp. Cell Res. 2005) 3 4 22 64
  5. Human myeloid zinc finger gene MZF produces multiple transcripts and encodes a SCAN box protein. (PMID: 10974541) Peterson M.J. … Morris J.F. (Gene 2000) 3 4 22 64

Products for MZF1 Gene

Sources for MZF1 Gene

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