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Aliases for MYT1 Gene

Aliases for MYT1 Gene

  • Myelin Transcription Factor 1 2 3
  • PLPB1 3 4 6
  • Neural Zinc Finger Transcription Factor 2 2 3
  • Proteolipid Protein-Binding Protein 3 4
  • Myelin Transcription Factor I 3 4
  • MTF1 3 4
  • MYTI 3 4
  • Proteolipid Protein Binding Protein 3
  • C20orf36 3
  • KIAA0835 4
  • KIAA1050 4
  • ZC2HC4A 3
  • MYT1 4
  • NZF2 3

External Ids for MYT1 Gene

Previous HGNC Symbols for MYT1 Gene

  • PLPB1

Previous GeneCards Identifiers for MYT1 Gene

  • GC20P062673
  • GC20P063475
  • GC20P063522
  • GC20P062253
  • GC20P062266
  • GC20P062795
  • GC20P059521
  • GC20P062796

Summaries for MYT1 Gene

Entrez Gene Summary for MYT1 Gene

  • The protein encoded by this gene is a member of a family of neural specific, zinc finger-containing DNA-binding proteins. The protein binds to the promoter regions of proteolipid proteins of the central nervous system and plays a role in the developing nervous system. [provided by RefSeq, Jul 2008]

GeneCards Summary for MYT1 Gene

MYT1 (Myelin Transcription Factor 1) is a Protein Coding gene. Diseases associated with MYT1 include leukomalacia and periventricular leukomalacia. Among its related pathways are Integrated Pancreatic Cancer Pathway and Integrated Breast Cancer Pathway. GO annotations related to this gene include sequence-specific DNA binding transcription factor activity. An important paralog of this gene is ST18.

UniProtKB/Swiss-Prot for MYT1 Gene

  • Binds to the promoter regions of proteolipid proteins of the central nervous system. May play a role in the development of neurons and oligodendrogalia in the CNS. May regulate a critical transition point in oligodendrocyte lineage development by modulating oligodendrocyte progenitor proliferation relative to terminal differentiation and up-regulation of myelin gene transcription.

Gene Wiki entry for MYT1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MYT1 Gene

Genomics for MYT1 Gene

Regulatory Elements for MYT1 Gene

Genomic Location for MYT1 Gene

Start:
64,151,791 bp from pter
End:
64,242,253 bp from pter
Size:
90,463 bases
Orientation:
Plus strand

Genomic View for MYT1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MYT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MYT1 Gene

Proteins for MYT1 Gene

  • Protein details for MYT1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q01538-MYT1_HUMAN
    Recommended name:
    Myelin transcription factor 1
    Protein Accession:
    Q01538
    Secondary Accessions:
    • E1P5H0
    • F5H7M8
    • O94922
    • Q7Z5W2
    • Q9UPV2

    Protein attributes for MYT1 Gene

    Size:
    1121 amino acids
    Molecular mass:
    122329 Da
    Quaternary structure:
    • Interacts with STEAP3.
    SequenceCaution:
    • Sequence=BAA74858.2; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for MYT1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for MYT1 Gene

Proteomics data for MYT1 Gene at MOPED

Post-translational modifications for MYT1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for MYT1 Gene

No data available for DME Specific Peptides for MYT1 Gene

Domains for MYT1 Gene

Gene Families for MYT1 Gene

HGNC:
  • ZC2HC :Zinc fingers, C2HC-type containing

Protein Domains for MYT1 Gene

Suggested Antigen Peptide Sequences for MYT1 Gene

Graphical View of Domain Structure for InterPro Entry

Q01538

UniProtKB/Swiss-Prot:

MYT1_HUMAN :
  • Q01538
Domain:
  • Contains 7 zinc fingers of the C2HC class arranged in two widely separated clusters. These two domains of DNA binding can function independently and recognize the same DNA sequence
Similarity:
  • Contains 7 C2HC-type zinc fingers.
genes like me logo Genes that share domains with MYT1: view

Function for MYT1 Gene

Molecular function for MYT1 Gene

UniProtKB/Swiss-Prot Function: Binds to the promoter regions of proteolipid proteins of the central nervous system. May play a role in the development of neurons and oligodendrogalia in the CNS. May regulate a critical transition point in oligodendrocyte lineage development by modulating oligodendrocyte progenitor proliferation relative to terminal differentiation and up-regulation of myelin gene transcription.

Gene Ontology (GO) - Molecular Function for MYT1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001158 enhancer sequence-specific DNA binding IEA --
GO:0003700 sequence-specific DNA binding transcription factor activity NAS 1280325
GO:0005515 protein binding --
GO:0008270 zinc ion binding NAS 1280325
genes like me logo Genes that share ontologies with MYT1: view
genes like me logo Genes that share phenotypes with MYT1: view

Animal Models for MYT1 Gene

MGI Knock Outs for MYT1:

miRNA for MYT1 Gene

miRTarBase miRNAs that target MYT1

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targeting and HOMER Transcription for MYT1 Gene

Localization for MYT1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MYT1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for MYT1 Gene COMPARTMENTS Subcellular localization image for MYT1 gene
Compartment Confidence
nucleus 5
cytosol 1

Gene Ontology (GO) - Cellular Components for MYT1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus NAS 1280325
GO:0005654 nucleoplasm IDA --
GO:0005737 cytoplasm IDA --
genes like me logo Genes that share ontologies with MYT1: view

Pathways for MYT1 Gene

genes like me logo Genes that share pathways with MYT1: view

Gene Ontology (GO) - Biological Process for MYT1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated NAS 1280325
GO:0007399 nervous system development IEA --
GO:0030154 cell differentiation IEA --
genes like me logo Genes that share ontologies with MYT1: view

Compounds for MYT1 Gene

(3) Novoseek inferred chemical compound relationships for MYT1 Gene

Compound -log(P) Hits PubMed IDs
hepa 73.5 2
zinc 52.1 18
cadmium 27 8
genes like me logo Genes that share compounds with MYT1: view

Transcripts for MYT1 Gene

Unigene Clusters for MYT1 Gene

Myelin transcription factor 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MYT1 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18a · 18b ^ 19 ^ 20 ^ 21 ^ 22a · 22b · 22c · 22d ·
SP1: - - - - - -
SP2: - - - - - - -
SP3: - - - -
SP4: - - - -
SP5: - - - - -
SP6: - - - -
SP7: - - -
SP8: - -
SP9:
SP10: -
SP11:
SP12:
SP13:
SP14:
SP15:
SP16:

ExUns: 22e ^ 23 ^ 24 ^ 25a · 25b ^ 26a · 26b · 26c ^ 27 ^ 28a · 28b ^ 29 ^ 30a · 30b · 30c · 30d
SP1:
SP2:
SP3: - - - - -
SP4: - - - -
SP5: - - - - - -
SP6: - - - - - - - - - - -
SP7: - -
SP8: - -
SP9:
SP10: - -
SP11:
SP12: -
SP13:
SP14:
SP15: - -
SP16:

Relevant External Links for MYT1 Gene

GeneLoc Exon Structure for
MYT1
ECgene alternative splicing isoforms for
MYT1

Expression for MYT1 Gene

mRNA expression in normal human tissues for MYT1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for MYT1 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (14.9) and Brain - Cerebellum (13.9).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for MYT1 Gene

SOURCE GeneReport for Unigene cluster for MYT1 Gene Hs.279562

mRNA Expression by UniProt/SwissProt for MYT1 Gene

Q01538-MYT1_HUMAN
Tissue specificity: Mostly in developing nervous system. Expressed in neural progenitors and oligodendrocyte lineage cells. More highly expressed in oligodendrocyte progenitors than in differentiated oligodendrocytes.
genes like me logo Genes that share expressions with MYT1: view

Orthologs for MYT1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for MYT1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MYT1 36
  • 95 (a)
OneToOne
cow
(Bos Taurus)
Mammalia MYT1 35
  • 88.08 (n)
  • 89.14 (a)
MYT1 36
  • 87 (a)
OneToOne
dog
(Canis familiaris)
Mammalia MYT1 35
  • 88.32 (n)
  • 90.53 (a)
MYT1 36
  • 90 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Myt1 35
  • 86.14 (n)
  • 90.72 (a)
Myt1 16
Myt1 36
  • 85 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia MYT1 36
  • 73 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia MYT1 36
  • 78 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Myt1 35
  • 87.52 (n)
  • 93.28 (a)
chicken
(Gallus gallus)
Aves MYT1 35
  • 79.14 (n)
  • 83.15 (a)
MYT1 36
  • 76 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia MYT1 36
  • 84 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia LOC397982 35
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100490628 35
  • 75.98 (n)
  • 83.48 (a)
zebrafish
(Danio rerio)
Actinopterygii myt1a 35
  • 71.52 (n)
  • 74.47 (a)
myt1a 36
  • 55 (a)
OneToMany
myt1b 36
  • 57 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta CG43689 36
  • 10 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea ztf-11 36
  • 18 (a)
OneToMany
soybean
(Glycine max)
eudicotyledons Gma.17722 35
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.8435 35
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 18 (a)
OneToMany
Species with no ortholog for MYT1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for MYT1 Gene

ENSEMBL:
Gene Tree for MYT1 (if available)
TreeFam:
Gene Tree for MYT1 (if available)

Paralogs for MYT1 Gene

Paralogs for MYT1 Gene

Selected SIMAP similar genes for MYT1 Gene using alignment to 4 proteins:

Pseudogenes.org Pseudogenes for MYT1 Gene

genes like me logo Genes that share paralogs with MYT1: view

Variants for MYT1 Gene

Sequence variations from dbSNP and Humsavar for MYT1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs23602 -- 64,221,417(-) TGGCC(C/T)GACAC intron-variant
rs168448 -- 64,221,222(-) AATCC(A/T)GTCCT intron-variant
rs184759 -- 64,227,984(-) CAGCA(C/T)GGCCC intron-variant
rs184760 -- 64,225,157(-) TGGTC(A/G)GAGGG intron-variant
rs187078 -- 64,239,294(-) CGTGG(A/G)GTGTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MYT1 Gene

Variant ID Type Subtype PubMed ID
nsv428381 CNV Gain+Loss 18775914
nsv913270 CNV Loss 21882294
dgv1346e1 CNV Complex 17122850
dgv1347e1 CNV Complex 17122850
nsv470564 CNV Gain 18288195
nsv524962 CNV Loss 19592680
nsv9833 CNV Gain 18304495
esv23921 CNV Gain+Loss 19812545
nsv821475 CNV Deletion 20802225
esv1483804 CNV Deletion 17803354
nsv179382 CNV Loss 16902084
esv1114131 CNV Deletion 17803354
esv1143799 CNV Deletion 17803354
esv1552174 CNV Deletion 17803354
nsv913317 CNV Loss 21882294
esv2097509 CNV Deletion 18987734
esv1049699 CNV Insertion 17803354
esv1433479 CNV Insertion 17803354
nsv527137 CNV Loss 19592680
nsv913318 CNV Loss 21882294
esv2317556 CNV Deletion 18987734
esv1005570 CNV Deletion 20482838
esv1395726 CNV Deletion 17803354
esv2559642 CNV Insertion 19546169
esv24888 CNV Loss 19812545
nsv179519 CNV Loss 16902084

Relevant External Links for MYT1 Gene

HapMap Linkage Disequilibrium report
MYT1
Human Gene Mutation Database (HGMD)
MYT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MYT1 Gene

Disorders for MYT1 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (3) Diseases for MYT1 Gene including...

Search for MYT1 Gene in MalaCards »

(1) University of Copenhagen DISEASES for MYT1 Gene

(2) Novoseek inferred disease relationships for MYT1 Gene

Disease -log(P) Hits PubMed IDs
leukomalacia periventricular 60.1 2
multiple sclerosis 17 1

Relevant External Links for MYT1

Genetic Association Database (GAD)
MYT1
Human Genome Epidemiology (HuGE) Navigator
MYT1
genes like me logo Genes that share disorders with MYT1: view

No data available for UniProtKB/Swiss-Prot for MYT1 Gene

Publications for MYT1 Gene

  1. Expression of myelin transcription factor I (MyTI), a 'zinc-finger' DNA-binding protein, in developing oligodendrocytes. (PMID: 8530187) Armstrong R.C. … Hudson L.D. (Glia 1995) 3 4 23
  2. Myelin transcription factor 1 (Myt1) modulates the proliferation and differentiation of oligodendrocyte lineage cells. (PMID: 14962745) Nielsen J.A. … Armstrong R.C. (Mol. Cell. Neurosci. 2004) 3 4 23
  3. Novel member of the zinc finger superfamily: a C2-HC finger that recognizes a glia-specific gene. (PMID: 1280325) Kim J.G. … Hudson L.D. (Mol. Cell. Biol. 1992) 2 3 4
  4. Plasticity in the adult human oligodendrocyte lineage. (PMID: 7519254) Gogate N. … Dubois-Dalcq M. (J. Neurosci. 1994) 3 23
  5. Evaluating new candidate SNPs as low penetrance risk factors in sporadic breast cancer: a two-stage Spanish case-control study. (PMID: 18950845) Vega A. … Carracedo A. (Gynecol. Oncol. 2009) 3 48

Products for MYT1 Gene

  • Addgene plasmids for MYT1

Sources for MYT1 Gene

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