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Aliases for MYOM3 Gene

Aliases for MYOM3 Gene

  • Myomesin 3 2 3 5
  • Myomesin Family, Member 3 2
  • Myomesin Family Member 3 4

External Ids for MYOM3 Gene

Previous GeneCards Identifiers for MYOM3 Gene

  • GC00U916990
  • GC01M024127
  • GC01M024255
  • GC01M024383
  • GC01M022635

Summaries for MYOM3 Gene

GeneCards Summary for MYOM3 Gene

MYOM3 (Myomesin 3) is a Protein Coding gene. GO annotations related to this gene include protein homodimerization activity. An important paralog of this gene is MYOM1.

UniProtKB/Swiss-Prot for MYOM3 Gene

  • May link the intermediate filament cytoskeleton to the M-disk of the myofibrils in striated muscle.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MYOM3 Gene

Genomics for MYOM3 Gene

Regulatory Elements for MYOM3 Gene

Promoters for MYOM3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around MYOM3 on UCSC Golden Path with GeneCards custom track

Genomic Location for MYOM3 Gene

Chromosome:
1
Start:
24,056,035 bp from pter
End:
24,112,175 bp from pter
Size:
56,141 bases
Orientation:
Minus strand

Genomic View for MYOM3 Gene

Genes around MYOM3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MYOM3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MYOM3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MYOM3 Gene

Proteins for MYOM3 Gene

  • Protein details for MYOM3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5VTT5-MYOM3_HUMAN
    Recommended name:
    Myomesin-3
    Protein Accession:
    Q5VTT5
    Secondary Accessions:
    • A6NF75
    • Q5VTT6
    • Q6AWC0
    • Q6AWC1
    • Q6NXF9
    • Q6ZRG7
    • Q7Z3G9
    • Q8NA11
    • Q96C54

    Protein attributes for MYOM3 Gene

    Size:
    1437 amino acids
    Molecular mass:
    162189 Da
    Quaternary structure:
    • Homodimer.

    Alternative splice isoforms for MYOM3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for MYOM3 Gene

Proteomics data for MYOM3 Gene at MOPED

Post-translational modifications for MYOM3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for MYOM3 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for MYOM3 Gene

Domains & Families for MYOM3 Gene

Suggested Antigen Peptide Sequences for MYOM3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q5VTT5

UniProtKB/Swiss-Prot:

MYOM3_HUMAN :
  • Contains 5 fibronectin type-III domains.
Domain:
  • Contains 5 fibronectin type-III domains.
  • Contains 4 Ig-like C2-type (immunoglobulin-like) domains.
genes like me logo Genes that share domains with MYOM3: view

Function for MYOM3 Gene

Molecular function for MYOM3 Gene

UniProtKB/Swiss-Prot Function:
May link the intermediate filament cytoskeleton to the M-disk of the myofibrils in striated muscle.
genes like me logo Genes that share phenotypes with MYOM3: view

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MYOM3 Gene

Localization for MYOM3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MYOM3 Gene

Cytoplasm, myofibril, sarcomere, M line.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for MYOM3 Gene COMPARTMENTS Subcellular localization image for MYOM3 gene
Compartment Confidence
cytosol 3
nucleus 3

No data available for Gene Ontology (GO) - Cellular Components for MYOM3 Gene

Pathways & Interactions for MYOM3 Gene

SuperPathways for MYOM3 Gene

No Data Available

Interacting Proteins for MYOM3 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000363557%0d%0a9606.ENSP00000361027%0d%0a9606.ENSP00000340896%0d%0a
Selected Interacting proteins: ENSP00000363557 for MYOM3 Gene via STRING

Gene Ontology (GO) - Biological Process for MYOM3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MYOM3 Gene

Drugs & Compounds for MYOM3 Gene

No Compound Related Data Available

Transcripts for MYOM3 Gene

Unigene Clusters for MYOM3 Gene

Myomesin 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MYOM3 Gene

No ASD Table

Relevant External Links for MYOM3 Gene

GeneLoc Exon Structure for
MYOM3
ECgene alternative splicing isoforms for
MYOM3

Expression for MYOM3 Gene

mRNA expression in normal human tissues for MYOM3 Gene

mRNA differential expression in normal tissues according to GTEx for MYOM3 Gene

This gene is overexpressed in Muscle - Skeletal (x23.2), Heart - Left Ventricle (x17.1), and Heart - Atrial Appendage (x8.7).

Protein differential expression in normal tissues from HIPED for MYOM3 Gene

This gene is overexpressed in Heart (64.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for MYOM3 Gene



SOURCE GeneReport for Unigene cluster for MYOM3 Gene Hs.523413

genes like me logo Genes that share expression patterns with MYOM3: view

Protein tissue co-expression partners for MYOM3 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for MYOM3 Gene

Orthologs for MYOM3 Gene

This gene was present in the common ancestor of animals.

Orthologs for MYOM3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MYOM3 35
  • 98.93 (n)
  • 98.61 (a)
MYOM3 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia MYOM3 36
  • 85 (a)
OneToOne
MYOM3 35
  • 86.01 (n)
  • 85.7 (a)
dog
(Canis familiaris)
Mammalia MYOM3 35
  • 87.48 (n)
  • 87.74 (a)
MYOM3 36
  • 87 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Myom3 16
Myom3 35
  • 83.37 (n)
  • 83.34 (a)
Myom3 36
  • 83 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia MYOM3 36
  • 74 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia MYOM3 36
  • 61 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Myom3 35
  • 82.83 (n)
  • 83.69 (a)
chicken
(Gallus gallus)
Aves MYOM3 35
  • 63.47 (n)
  • 60.84 (a)
MYOM3 36
  • 60 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia MYOM3 36
  • 59 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia myom3 35
  • 58.08 (n)
  • 54.45 (a)
zebrafish
(Danio rerio)
Actinopterygii myom3 36
  • 44 (a)
OneToOne
myom3 35
  • 54.3 (n)
  • 43.8 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG14964 36
  • 11 (a)
ManyToMany
sls 36
  • 2 (a)
ManyToMany
Species with no ortholog for MYOM3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MYOM3 Gene

ENSEMBL:
Gene Tree for MYOM3 (if available)
TreeFam:
Gene Tree for MYOM3 (if available)

Paralogs for MYOM3 Gene

Paralogs for MYOM3 Gene

(3) SIMAP similar genes for MYOM3 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with MYOM3: view

Variants for MYOM3 Gene

Sequence variations from dbSNP and Humsavar for MYOM3 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
VAR_038179 -
rs4233050 - 24,093,006(+) GGACC(A/G)TGTAG reference, missense
rs6700245 - 24,090,925(+) GGCCT(C/T)GGATT reference, missense
rs4393101 - 24,089,569(+) CTCTG(A/C/T)CCCGG reference, missense
rs4320729 - 24,082,701(+) CAGCC(C/T)GGGAA reference, missense

Structural Variations from Database of Genomic Variants (DGV) for MYOM3 Gene

Variant ID Type Subtype PubMed ID
esv2609872 CNV Deletion 19546169
esv1968924 CNV Deletion 18987734
esv2745430 CNV Deletion 23290073
esv989974 CNV Deletion 20482838
esv1250620 CNV Deletion 17803354
esv5851 CNV Loss 19470904
nsv822054 CNV Loss 20364138

Variation tolerance for MYOM3 Gene

Residual Variation Intolerance Score: 99.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 26.68; 99.79% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for MYOM3 Gene

HapMap Linkage Disequilibrium report
MYOM3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MYOM3 Gene

Disorders for MYOM3 Gene

Relevant External Links for MYOM3

Genetic Association Database (GAD)
MYOM3
Human Genome Epidemiology (HuGE) Navigator
MYOM3
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MYOM3

No disorders were found for MYOM3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MYOM3 Gene

Publications for MYOM3 Gene

  1. Myomesin 3, a novel structural component of the M-band in striated muscle. (PMID: 18177667) Schoenauer R. … Agarkova I. (J. Mol. Biol. 2008) 2 3 23 67
  2. Genome-wide association of mood-incongruent psychotic bipolar disorder. (PMID: 23092984) Goes F.S. … Potash J.B. (Transl Psychiatry 2012) 3
  3. Gene variants associated with ischemic stroke: the cardiovascular health study. (PMID: 19023099) Luke M.M. … Psaty B.M. (Stroke 2009) 3
  4. Association of gene variants with incident myocardial infarction in the Cardiovascular Health Study. (PMID: 17975119) Shiffman D. … Psaty B.M. (Arterioscler. Thromb. Vasc. Biol. 2008) 3
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for MYOM3 Gene

Sources for MYOM3 Gene

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