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Aliases & Descriptions for MYOD1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| MYF3 2, 3, 5 | | MYOD 1, 2, 3 | | Myf-3 3 | | PUM 1, 2 | | bHLHc1 1, 2 |
| | | Descriptions |
|---|
| Myogenic factor 3 1, 2, 3 | | myoblast determination protein 1 2 | | myogenic differentiation 1 2 |
|
| | Search outside databases for aliases for MYOD1 genePrevious GC identifers: GC11P018862 GC11P018683 GC11P017780 GC11P017705 |
Summaries for MYOD1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for MYOD1: This gene encodes a nuclear protein that belongs to the basic helix-loop-helix family of transcription factors and the myogenic factors subfamily. It regulates muscle cell differentiation by inducing cell cycle arrest, a prerequisite for myogenic initiation. The protein is also involved in muscle regeneration. It activates its own transcription which may stabilize commitment to myogenesis. [provided by RefSeq] UniProtKB/Swiss-Prot: MYOD1_HUMAN, P15172Function: Involved in muscle differentiation (myogenic factor). Induces fibroblasts to differentiate into myoblasts. Activates muscle-specific promoters. Interacts with and is inhibited by the twist protein. This interaction probably involves the basic domains of both proteins (By similarity) |
Genomic Location for MYOD1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the MYOD1 gene 
Entrez Gene cytogenetic band: 11p15.4 Ensembl cytogenetic band: 11p15.1 HGNC cytogenetic band: 11p15MYOD1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure GeneLoc location for GC11P017697:
(about GC identifiers)
Start:
|
17,697,686 bp from pter |
End:
|
17,700,254 bp from pter |
Size:
|
2,569 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000011.8 NT_009237.17
| Proteins for MYOD1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: MYOD1_HUMAN, P15172 (See
protein sequence)Recommended Name: Myoblast determination protein 1 Size: 320 amino acids; 34501 Da
Subunit: Efficient DNA binding requires dimerization with another bHLH protein. Seems to form active heterodimers with ITF-2. Interacts with SUV39H1
Subcellular location: Nucleus
Secondary accessions: O75321Post-translational modifications:
Acetylated by a complex containing EP300 and PCAF. The acetylation is essential to activate target genes. Conversely, its deacetylation by SIRT1 inhibits its function (By similarity)1
Ubiquitinated on the N-terminus; which is required for proteasomal degradation1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_002469.2
ENSEMBL proteins: ENSP00000250003
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: MYOD1 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for MYOD1: Assays for MYOD1: | Protein
Domains/ Families for MYOD1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P15172
ProtoNet protein and cluster: P15172 2 Blocks protein families: IPB001092 Basic helix-loop-helix dimerization domain bHLH IPB002546 Myogenic basic muscle-specific protein
UniProtKB/Swiss-Prot: MYOD1_HUMAN, P15172Similarity: Contains 1 basic helix-loop-helix (bHLH) domain | Gene Function for MYOD1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002478
Applied Biosystems Silencer® siRNAs for MYOD1
Sigma-Aldrich siRNA for MYOD1  Sigma-Aldrich shRNA for MYOD1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002478                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002478                                  untagged cDNA clone in CMV expression vector: NM_002478 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002478
UniProtKB/Swiss-Prot: MYOD1_HUMAN, P15172Function: Involved in muscle differentiation (myogenic factor). Induces fibroblasts to differentiate into myoblasts. Activates muscle-specific promoters. Interacts with and is inhibited by the twist protein. This interaction probably involves the basic domains of both proteins (By similarity)Genatlas biochemistry entry for MYOD1:myogenic differentiation 1,transcription activator of muscle specific genes,promoting cell cycle exit by inducing CDKNIA12 MGI mutant phenotypes (inferred from 5 alleles ) (MGI details for Myod1):
3 Gene Ontology (GO) molecular function terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0003705 | RNA polymerase II transcription factor activity, enhancer binding |
TAS | 1846704 | | GO:0003713 | transcription coactivator activity |
TAS | 1846704 | | GO:0008134 | transcription factor binding |
IEA | -- | About this table | Pathways & Interactions for MYOD1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for MYOD1 
5/155 Interacting proteins for MYOD1 (ENSP000002500033 P151721, 2) via UniProtKB, MINT, and/or STRING (see all 155
)About this table
5/11 Gene Ontology (GO) biological process terms (links to tree view) (see all 11
): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0000381 | regulation of alternative nuclear mRNA splicing, via spliceosome |
IEA | -- | | GO:0006468 | protein amino acid phosphorylation |
TAS | 3175662 | | GO:0007275 | multicellular organismal development |
IEA | -- | | GO:0007517 | muscle development |
TAS | 1846704 | | GO:0007518 | myoblast cell fate determination |
IEA | -- | About this table
|
Drugs & Compounds for MYOD1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for MYOD1 10/25 Novoseek chemical compound relationships for MYOD1 gene (see all 25
)
About this table
|
Transcripts for MYOD1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002478
Sigma-Aldrich siRNA for MYOD1  Sigma-Aldrich shRNA for MYOD1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_002478 REFSEQ mRNAs for MYOD1 gene: NM_002478.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002478               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002478                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002478                                  untagged cDNA clone in CMV expression vector: NM_002478  Additional cDNA sequence: AK314968.1 BC064493.1 BT007157.1 CR612159.1 X17650.1 X56677.1 4 DOTS entries: DT.100828831 DT.95218213 DT.86848246 DT.91770652 24/86 AceView cDNA sequences (see all 86
):BI115390 NM_002478 AI300241 BE296570 CR612159 BC064493 BE019098 BG828208 BF309303 BF204506 BE298382 BE250705 BF205585 BI114877 BF204151 BE299732 BF304451 BI114827 BX283932 BE297539 BE019350 BF205507 BU738397 BG827263
highest scoring ESTs for MYOD1:BC064493 BE250506 BE296570 BE299484 BE299697 BE299732 BE299768 BE300295 BF203994 BF204151 Unigene Cluster for MYOD1: Myogenic differentiation 1 Hs.181768 [show with all ESTs]Unigene Representative Sequence: NM_002478
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000250003
|
Expression for MYOD1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| MYOD1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for MYOD1
1 / 2 / 3 3 probe-sets matching MYOD1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GTGTGTGGTG
SOURCE GeneReport for Unigene cluster: Hs.181768
Expression variation in blood from EXPOLDB for MYOD1 |
Orthologs for MYOD1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for MYOD1 gene from 5/7 species (see all 7
)
About this table Species with no ortholog for MYOD1
ENSEMBL Gene Tree for MYOD1 | Paralogs for MYOD1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for MYOD1 gene
- MYF52 MYOG2 MYF62
|
SNPs/Variants for MYOD1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for MYOD1 (up to first 250kb)
|
Disorders & Mutations for MYOD1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 159970
10/32 Novoseek disease relationships for MYOD1 gene (see all 32
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| rhabdomyosarcoma |
79.50 |
49 |
19299559 (5), 2260621 (5), 8383879 (5), 12783965 (2) (see all 25) |
| rhabdomyosarcoma embryonal |
64.17 |
5 |
16010486 (1), 18656317 (1), 19299559 (1), 16220232 (1) |
| rhabdomyosarcoma alveolar |
57.09 |
1 |
9256013 (1) |
| sarcoma alveolar soft part |
51.10 |
6 |
10383802 (4), 12778001 (1), 1656801 (1) |
| rhabdoid tumor |
46.77 |
1 |
2260621 (1) |
| sarcoma extraosseous ewings |
46.21 |
1 |
2260621 (1) |
| retinoblastoma |
42.12 |
5 |
7970718 (2), 12665587 (1), 10601020 (1), 8400456 (1) |
| ewings sarcoma |
39.37 |
5 |
12426678 (2), 10227726 (1), 2260621 (1), 7495304 (1) |
| hypertrophy |
37.01 |
4 |
12716875 (1), 17661068 (1), 17395765 (1), 10370140 (1) |
| muscular dystrophies |
36.16 |
1 |
18334989 (1) |
About this table
Tumor Gene Database: MYOD1
|
Medical News for MYOD1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for MYOD1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/536 PubMed articles for MYOD1 gene (see all 536
):- Control of muscle development by dueling HATs and HDACs. (PubMed id 11532390)1, 3, 4 McKinsey T.A.... Olson E.N. (2001)
- Histone methyltransferase Suv39h1 represses MyoD-stimulated myogenic differentiation. (PubMed id 16858404)3, 4 Mal A.K. (2006)
- A novel site for ubiquitination: the N-terminal residue, and not internal lysines of MyoD, is essential for conjugation and degradation of the protein. (PubMed id 9774340)3, 4 Breitschopf K.... Ciechanover A. (1998)
- Methylation alterations of the MyoD1 upstream region are predictive of subclassification of human rhabdomyosarcomas. (PubMed id 9546368)3, 4 Chen B.... Parham D.M. (1998)
- Human MyoD: cDNA and deduced amino acid sequence. (PubMed id 1850513)3, 4 Pearson-White S.H. (1991)
- Differential expression of myogenic determination genes in muscle cells: possible autoactivation by the Myf gene products. (PubMed id 2583111)3, 4 Braun T....Arnold H.H. (1989)
- Phosphorylation of nuclear MyoD is required for its rapid degradation. (PubMed id 9710583)1, 3 Song A....Harrington M.A. (1998)
- Direct inhibition of G(1) cdk kinase activity by MyoD promotes myoblast cell cycle withdrawal and terminal differentiation. (PubMed id 10601020)1, 3 Zhang J.M....Paterson B.M. (1999)
- MyoD and E-protein heterodimers switch rhabdomyosarcoma cells from an arrested myoblast phase to a differentiated state. (PubMed id 19299559)1, 3 Yang Z....Tapscott S.J. (2009)
- Analysis of the DNA-binding properties of MyoD, myogenin, and E12 by fluorescence anisotropy. (PubMed id 12196028)1, 3 Maleki S.J....Hurlburt B.K. (2002)
|
Search for MYOD1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing MYOD1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing MYOD1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing MYOD1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for MYOD1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for MYOD1:

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Incremental update: 13 Oct 2009
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