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Aliases for MYO6 Gene

Aliases for MYO6 Gene

  • Myosin VI 2 3
  • Unconventional Myosin-6 3 4
  • DFNA22 3 6
  • DFNB37 3 6
  • Deafness, Autosomal Recessive 37 2
  • Unconventional Myosin-VI 3
  • Myosin-VI 3
  • KIAA0389 4

External Ids for MYO6 Gene

Previous HGNC Symbols for MYO6 Gene

  • DFNA22
  • DFNB37

Previous GeneCards Identifiers for MYO6 Gene

  • GC06P076406
  • GC06P076454
  • GC06P076515
  • GC06P073657

Summaries for MYO6 Gene

Entrez Gene Summary for MYO6 Gene

  • This gene encodes a reverse-direction motor protein that moves toward the minus end of actin filaments and plays a role in intracellular vesicle and organelle transport. The protein consists of a motor domain containing an ATP- and an actin-binding site and a globular tail which interacts with other proteins. This protein maintains the structural integrity of inner ear hair cells and mutations in this gene cause non-syndromic autosomal dominant and recessive hearing loss. Alternative splicing results in multiple transcript variants encoding distinct isoforms. [provided by RefSeq, Jul 2014]

GeneCards Summary for MYO6 Gene

MYO6 (Myosin VI) is a Protein Coding gene. Diseases associated with MYO6 include deafness, autosomal dominant 22 and deafness, autosomal recessive 37. Among its related pathways are RhoGDI Pathway and ERK Signaling. GO annotations related to this gene include actin binding and actin filament binding. An important paralog of this gene is MYO7A.

UniProtKB/Swiss-Prot for MYO6 Gene

  • Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Myosin 6 is a reverse-direction motor protein that moves towards the minus-end of actin filaments. Has slow rate of actin-activated ADP release due to weak ATP binding. Functions in a variety of intracellular processes such as vesicular membrane trafficking and cell migration. Required for the structural integrity of the Golgi apparatus via the p53-dependent pro-survival pathway. Appears to be involved in a very early step of clathrin-mediated endocytosis in polarized epithelial cells. May act as a regulator of F-actin dynamics. May play a role in transporting DAB2 from the plasma membrane to specific cellular targets. Required for structural integrity of inner ear hair cells (By similarity).

Gene Wiki entry for MYO6 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MYO6 Gene

Genomics for MYO6 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for MYO6 Gene

Start:
75,749,176 bp from pter
End:
75,919,537 bp from pter
Size:
170,362 bases
Orientation:
Plus strand

Genomic View for MYO6 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MYO6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MYO6 Gene

Proteins for MYO6 Gene

  • Protein details for MYO6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9UM54-MYO6_HUMAN
    Recommended name:
    Unconventional myosin-VI
    Protein Accession:
    Q9UM54
    Secondary Accessions:
    • A6H8V4
    • E1P540
    • Q5TEM5
    • Q5TEM6
    • Q5TEM7
    • Q9BZZ7
    • Q9UEG2

    Protein attributes for MYO6 Gene

    Size:
    1294 amino acids
    Molecular mass:
    149691 Da
    Quaternary structure:
    • Homodimer. Binding to calmodulin through a unique insert, not found in other myosins, located in the neck region between the motor domain and the IQ domain appears to contribute to the directionality reversal. This interaction occurs only if the C-terminal lobe of calmodulin is occupied by calcium. Interaction with F-actin/ACTN1 occurs only at the apical brush border domain of the proximal tubule cells (By similarity). Interacts with DAB2. In vitro, the C-terminal globular tail binds a C-terminal region of DAB2. Interacts with CFTR. Forms a complex with CFTR and DAB2 in the apical membrane of epithelial cells. Interacts with OPTN (By similarity).
    SequenceCaution:
    • Sequence=BAA20843.2; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Alternative splice isoforms for MYO6 Gene

neXtProt entry for MYO6 Gene

Proteomics data for MYO6 Gene at MOPED

Post-translational modifications for MYO6 Gene

  • Phosphorylation in the motor domain, induced by EGF, results in translocation of MYO6 from the cell surface to membrane ruffles and affects F-actin dynamics. Phosphorylated in vitro by p21-activated kinase (PAK) (By similarity).
  • Ubiquitination at Lys425, Lys646, Lys750, Lys755, Lys1067, Lys1132, and Lys1183
  • Modification sites at PhosphoSitePlus

Other Protein References for MYO6 Gene

Antibody Products

  • Cell Signaling Technology (CST) Antibodies for MYO6 (MYO6)

No data available for DME Specific Peptides for MYO6 Gene

Domains for MYO6 Gene

Gene Families for MYO6 Gene

HGNC:
  • MYOVI :Myosins / Myosin superfamily : Class VI

Protein Domains for MYO6 Gene

Suggested Antigen Peptide Sequences for MYO6 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9UM54

UniProtKB/Swiss-Prot:

MYO6_HUMAN :
  • Q9UM54
Domain:
  • Divided into three regions: a N-terminal motor (head) domain, followed by a neck domain consisting of a calmodulin-binding linker domain and a single IQ motif, and a C-terminal tail region with a coiled-coil and a unique globular domain required for interaction with other proteins
  • Contains 1 IQ domain.
  • Contains 1 myosin motor domain.
Family:
  • Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
genes like me logo Genes that share domains with MYO6: view

Function for MYO6 Gene

Molecular function for MYO6 Gene

GENATLAS Biochemistry: myosin 6,unconventional,motor contractile protein moving in the reverse duection,toward the "minus" end of actin track,apparently non filamentous,mouse Myo6 ortholog responsible for deafness in Snell waltzer mice expressed in fetal cochlea (articular plate of hair cells) and brain
UniProtKB/Swiss-Prot Function: Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Myosin 6 is a reverse-direction motor protein that moves towards the minus-end of actin filaments. Has slow rate of actin-activated ADP release due to weak ATP binding. Functions in a variety of intracellular processes such as vesicular membrane trafficking and cell migration. Required for the structural integrity of the Golgi apparatus via the p53-dependent pro-survival pathway. Appears to be involved in a very early step of clathrin-mediated endocytosis in polarized epithelial cells. May act as a regulator of F-actin dynamics. May play a role in transporting DAB2 from the plasma membrane to specific cellular targets. Required for structural integrity of inner ear hair cells (By similarity).

Gene Ontology (GO) - Molecular Function for MYO6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003774 motor activity ISS --
GO:0003779 actin binding TAS 10519557
GO:0005515 protein binding IPI 11447109
GO:0005516 calmodulin binding TAS 12857860
GO:0005524 ATP binding IEA --
genes like me logo Genes that share ontologies with MYO6: view
genes like me logo Genes that share phenotypes with MYO6: view

Animal Model Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for MYO6

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for MYO6 Gene

Localization for MYO6 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MYO6 Gene

Golgi apparatus, trans-Golgi network membrane; Peripheral membrane protein. Golgi apparatus. Nucleus. Cytoplasm, perinuclear region. Membrane, clathrin-coated pit. Cell projection, ruffle membrane; Peripheral membrane protein. Note=Also present in endocyctic vesicles, and membrane ruffles. Translocates from membrane ruffles, endocytic vesicles and cytoplasm to Golgi apparatus, perinuclear membrane and nucleus through induction by p53 and p53-induced DNA damage. Recruited into membrane ruffles from cell surface by EGF-stimulation. Colocalizes with DAB2 in clathrin-coated pits/vesicles. Colocalizes with OPTN at the Golgi complex and in vesicular structures close to the plasma membrane (By similarity). {ECO:0000250}.
Isoform 3: Cytoplasmic vesicle, clathrin-coated vesicle membrane.
Isoform 4: Cytoplasmic vesicle, clathrin-coated vesicle membrane. Cell projection, ruffle membrane.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for MYO6 Gene COMPARTMENTS Subcellular localization image for MYO6 gene
Compartment Confidence
cytoskeleton 5
golgi apparatus 5
nucleus 5
plasma membrane 5
cytosol 4
lysosome 4
vacuole 4
endosome 2

Gene Ontology (GO) - Cellular Components for MYO6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001726 ruffle IDA 16507995
GO:0005634 nucleus IDA 16507995
GO:0005654 nucleoplasm IDA 16948370
GO:0005737 cytoplasm ISS --
GO:0005765 lysosomal membrane TAS --
genes like me logo Genes that share ontologies with MYO6: view

Pathways for MYO6 Gene

genes like me logo Genes that share pathways with MYO6: view

Gene Ontology (GO) - Biological Process for MYO6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006605 protein targeting IEA --
GO:0006886 intracellular protein transport ISS --
GO:0006897 endocytosis ISS --
GO:0007268 synaptic transmission TAS --
GO:0007416 synapse assembly IEA --
genes like me logo Genes that share ontologies with MYO6: view

Compounds for MYO6 Gene

(1) HMDB Compounds for MYO6 Gene

Compound Synonyms Cas Number PubMed IDs
Calcium
  • Ca
7440-70-2

(6) Novoseek inferred chemical compound relationships for MYO6 Gene

Compound -log(P) Hits PubMed IDs
adp 50.5 10
atp 39.1 9
calcium 0 4
threonine 0 2
glutamate 0 2
genes like me logo Genes that share compounds with MYO6: view

Transcripts for MYO6 Gene

Unigene Clusters for MYO6 Gene

Myosin VI:
Representative Sequences:

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for MYO6

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for MYO6

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MYO6 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21 ^ 22 ^ 23 ^ 24 ^ 25 ^ 26 ^
SP1:
SP2:
SP3:

ExUns: 27 ^ 28 ^ 29 ^ 30 ^ 31 ^ 32a · 32b ^ 33a · 33b · 33c
SP1: - -
SP2: - -
SP3:

Relevant External Links for MYO6 Gene

GeneLoc Exon Structure for
MYO6
ECgene alternative splicing isoforms for
MYO6

Expression for MYO6 Gene

mRNA expression in normal human tissues for MYO6 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for MYO6 Gene

SOURCE GeneReport for Unigene cluster for MYO6 Gene Hs.149387

mRNA Expression by UniProt/SwissProt for MYO6 Gene

Q9UM54-MYO6_HUMAN
Tissue specificity: Expressed in most tissues examined including heart, brain, placenta, pancreas, spleen, thymus, prostate, testis, ovary, small intestine and colon. Highest levels in brain, pancreas, testis and small intestine. Also expressed in fetal brain and cochlea. Isoform 1 and isoform 2, containing the small insert, and isoform 4, containing neither insert, are expressed in unpolarized epithelial cells.
genes like me logo Genes that share expressions with MYO6: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues for MYO6 Gene

Orthologs for MYO6 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for MYO6 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MYO6 35
  • 99.79 (n)
  • 99.53 (a)
MYO6 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia MYO6 35
  • 91.88 (n)
  • 96.5 (a)
MYO6 36
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia MYO6 35
  • 94.03 (n)
  • 97.01 (a)
MYO6 36
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Myo6 35
  • 88.48 (n)
  • 96.83 (a)
Myo6 16
Myo6 36
  • 97 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia MYO6 36
  • 95 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia MYO6 36
  • 92 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Myo6 35
  • 87.5 (n)
  • 95.54 (a)
chicken
(Gallus gallus)
Aves MYO6 35
  • 81.77 (n)
  • 90.6 (a)
MYO6 36
  • 91 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia MYO6 36
  • 92 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia myo6 35
  • 78.1 (n)
  • 87.45 (a)
zebrafish
(Danio rerio)
Actinopterygii myo6a 36
  • 81 (a)
OneToMany
myo6b 35
  • 73.26 (n)
  • 83.81 (a)
myo6b 36
  • 84 (a)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP000776 35
  • 51.52 (n)
  • 52.11 (a)
fruit fly
(Drosophila melanogaster)
Insecta jar 35
  • 54.09 (n)
  • 53.28 (a)
jar 36
  • 52 (a)
OneToOne
jar 37
  • 51 (a)
worm
(Caenorhabditis elegans)
Secernentea hum-8 35
  • 53.94 (n)
  • 48.93 (a)
hum-8 36
  • 44 (a)
OneToMany
spe-15 36
  • 48 (a)
OneToMany
hum-8 37
  • 43 (a)
spe-15 37
  • 50 (a)
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.6031 35
rice
(Oryza sativa)
Liliopsida Os.22677 35
sea squirt
(Ciona savignyi)
Ascidiacea CSA.1865 36
  • 59 (a)
OneToOne
Species with no ortholog for MYO6:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for MYO6 Gene

ENSEMBL:
Gene Tree for MYO6 (if available)
TreeFam:
Gene Tree for MYO6 (if available)

Paralogs for MYO6 Gene

Selected SIMAP similar genes for MYO6 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with MYO6: view

Variants for MYO6 Gene

Sequence variations from dbSNP and Humsavar for MYO6 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs12606 Benign 75,915,024(+) CACAC(C/T)AGCCT utr-variant-3-prime, intron-variant
rs276692 -- 75,750,384(-) GGCGC(A/G)GTGGC intron-variant
rs276693 -- 75,751,467(-) GCTCA(C/T)GTTTC intron-variant
rs276694 -- 75,758,424(-) GGTGC(A/G)AAATT intron-variant
rs276695 -- 75,759,398(-) TAAGA(A/G)TTTCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MYO6 Gene

Variant ID Type Subtype PubMed ID
dgv6907n71 CNV Loss 21882294
dgv6908n71 CNV Loss 21882294
esv2618363 CNV Deletion 19546169

Relevant External Links for MYO6 Gene

HapMap Linkage Disequilibrium report
MYO6
Human Gene Mutation Database (HGMD)
MYO6
Locus Specific Mutation Databases (LSDB)
MYO6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MYO6 Gene

Disorders for MYO6 Gene

(2) OMIM Diseases for MYO6 Gene (600970)

UniProtKB/Swiss-Prot

MYO6_HUMAN
  • Deafness, autosomal dominant, 22 (DFNA22) [MIM:606346]: A form of non-syndromic sensorineural hearing loss. Sensorineural deafness results from damage to the neural receptors of the inner ear, the nerve pathways to the brain, or the area of the brain that receives sound information. DFNA22 is progressive and postlingual, with onset during childhood. By the age of approximately 50 years, affected individuals invariably have profound sensorineural deafness. {ECO:0000269 PubMed:11468689}. Note=The disease is caused by mutations affecting the gene represented in this entry.
  • Deafness, autosomal recessive, 37 (DFNB37) [MIM:607821]: A form of non-syndromic sensorineural hearing loss. Sensorineural deafness results from damage to the neural receptors of the inner ear, the nerve pathways to the brain, or the area of the brain that receives sound information. {ECO:0000269 PubMed:12687499}. Note=The disease is caused by mutations affecting the gene represented in this entry.
  • Deafness, sensorineural, with hypertrophic cardiomyopathy (DFNHCM) [MIM:606346]: An autosomal dominant sensorineural deafness associated with hypertrophic cardiomyopathy. {ECO:0000269 PubMed:15060111}. Note=The disease is caused by mutations affecting the gene represented in this entry.

(2) University of Copenhagen DISEASES for MYO6 Gene

(4) Novoseek inferred disease relationships for MYO6 Gene

Disease -log(P) Hits PubMed IDs
deafness sensorineural 35.8 2
stroke 17.9 9
tumors 1.27 2
ovarian cancer 0 3

Relevant External Links for MYO6

Genetic Association Database (GAD)
MYO6
Human Genome Epidemiology (HuGE) Navigator
MYO6
genes like me logo Genes that share disorders with MYO6: view

Publications for MYO6 Gene

  1. MYO6, the human homologue of the gene responsible for deafness in Snell's waltzer mice, is mutated in autosomal dominant nonsyndromic hearing loss. (PMID: 11468689) Melchionda S. … Gasparini P. (Am. J. Hum. Genet. 2001) 2 3 4 23
  2. Myosin VI is an actin-based motor that moves backwards. (PMID: 10519557) Wells A.L. … Sweeney H.L. (Nature 1999) 3 4 23
  3. Myosin VI regulates endocytosis of the cystic fibrosis transmembrane conductance regulator. (PMID: 15247260) Swiatecka-Urban A. … Stanton B.A. (J. Biol. Chem. 2004) 3 4 23
  4. A monomeric myosin VI with a large working stroke. (PMID: 15044955) Lister I. … Kendrick-Jones J. (EMBO J. 2004) 3 4 23
  5. Myosin VI is a mediator of the p53-dependent cell survival pathway. (PMID: 16507995) Jung E.J. … Chen X. (Mol. Cell. Biol. 2006) 3 4 23

Products for MYO6 Gene

Sources for MYO6 Gene

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