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Aliases for MYO1H Gene

Aliases for MYO1H Gene

  • Myosin IH 2 3 5
  • Myosin-1H 3 4
  • Unconventional Myosin-Ih 3
  • Myosin-Ih 3

External Ids for MYO1H Gene

Previous GeneCards Identifiers for MYO1H Gene

  • GC12U990168
  • GC12P108362
  • GC12P109826
  • GC12P106844

Summaries for MYO1H Gene

GeneCards Summary for MYO1H Gene

MYO1H (Myosin IH) is a Protein Coding gene. Diseases associated with MYO1H include Spastic Paraplegia 36, Autosomal Dominant. Among its related pathways are Delta508-CFTR traffic / ER-to-Golgi in CF. GO annotations related to this gene include actin binding and motor activity. An important paralog of this gene is MYO1C.

UniProtKB/Swiss-Prot for MYO1H Gene

  • Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Their highly divergent tails are presumed to bind to membranous compartments, which would be moved relative to actin filaments (By similarity).

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MYO1H Gene

Genomics for MYO1H Gene

Regulatory Elements for MYO1H Gene

Enhancers for MYO1H Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G109457 2 FANTOM5 Ensembl ENCODE dbSUPER 18.3 +115.1 115114 11.2 CREB3L1 MLX DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF263 MEF2D SSRP1 KCTD10 MYO1H SART3 TRPV4 UBE3B ANAPC7 MVK ENSG00000255655
GH12G109432 1.2 Ensembl ENCODE dbSUPER 21.9 +85.1 85148 0.7 HDGF CTCF TFAP4 RB1 ARID4B MAX RAD21 ZNF143 SMC3 FOS MYO1H RNU4-32P MMAB MVK UBE3B GC12M109436 GC12P109414
GH12G109438 0.8 dbSUPER 29.5 +91.5 91460 2.2 SUZ12 ARNT ZNF335 ZNF121 ZNF366 ZBTB48 SCRT2 ZNF207 PRDM10 RELB MYO1H UBE3B KCTD10 GC12M109436 ENSG00000255655
GH12G109612 1.1 dbSUPER 19.9 +269.9 269902 11.0 HDGF FOXA2 PKNOX1 CREB3L1 ARNT ARID4B ZNF766 FOS KLF13 SP3 KCTD10 MYO1H MMAB MVK CORO1C RNU4-32P FAM222A FAM222A-AS1 UBE3B ACACB
GH12G109109 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10 -234.3 -234294 8.5 HDGF PKNOX1 FOXA2 MLX CREB3L1 ARNT AGO1 ARID4B SIN3A DMAP1 ACACB MYO1H ALKBH2 UNG DAO ENSG00000256139 LOC105369974
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MYO1H on UCSC Golden Path with GeneCards custom track

Genomic Location for MYO1H Gene

Chromosome:
12
Start:
109,347,903 bp from pter
End:
109,455,523 bp from pter
Size:
107,621 bases
Orientation:
Plus strand

Genomic View for MYO1H Gene

Genes around MYO1H on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MYO1H Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MYO1H Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MYO1H Gene

Proteins for MYO1H Gene

  • Protein details for MYO1H Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N1T3-MYO1H_HUMAN
    Recommended name:
    Unconventional myosin-Ih
    Protein Accession:
    Q8N1T3
    Secondary Accessions:
    • F5H3C6

    Protein attributes for MYO1H Gene

    Size:
    1032 amino acids
    Molecular mass:
    119037 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for MYO1H Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for MYO1H Gene

Post-translational modifications for MYO1H Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for MYO1H Gene

No data available for DME Specific Peptides for MYO1H Gene

Domains & Families for MYO1H Gene

Gene Families for MYO1H Gene

Suggested Antigen Peptide Sequences for MYO1H Gene

Graphical View of Domain Structure for InterPro Entry

Q8N1T3

UniProtKB/Swiss-Prot:

MYO1H_HUMAN :
  • Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
Family:
  • Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
genes like me logo Genes that share domains with MYO1H: view

Function for MYO1H Gene

Molecular function for MYO1H Gene

UniProtKB/Swiss-Prot Function:
Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Their highly divergent tails are presumed to bind to membranous compartments, which would be moved relative to actin filaments (By similarity).

Gene Ontology (GO) - Molecular Function for MYO1H Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003774 motor activity IEA --
GO:0003779 actin binding IEA --
GO:0005524 ATP binding IEA --
genes like me logo Genes that share ontologies with MYO1H: view
genes like me logo Genes that share phenotypes with MYO1H: view

Animal Models for MYO1H Gene

MGI Knock Outs for MYO1H:

Animal Model Products

CRISPR Products

Inhibitory RNA Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for MYO1H Gene

Localization for MYO1H Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MYO1H gene
Compartment Confidence
cytoskeleton 4
cytosol 3
nucleus 1

Gene Ontology (GO) - Cellular Components for MYO1H Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016459 myosin complex IEA --
genes like me logo Genes that share ontologies with MYO1H: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for MYO1H Gene

Pathways & Interactions for MYO1H Gene

genes like me logo Genes that share pathways with MYO1H: view

Pathways by source for MYO1H Gene

Gene Ontology (GO) - Biological Process for MYO1H Gene

None

No data available for SIGNOR curated interactions for MYO1H Gene

Drugs & Compounds for MYO1H Gene

No Compound Related Data Available

Transcripts for MYO1H Gene

mRNA/cDNA for MYO1H Gene

(4) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(7) Selected AceView cDNA sequences:
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MYO1H Gene

Myosin IH:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for MYO1H Gene

No ASD Table

Relevant External Links for MYO1H Gene

GeneLoc Exon Structure for
MYO1H
ECgene alternative splicing isoforms for
MYO1H

Expression for MYO1H Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MYO1H Gene

mRNA differential expression in normal tissues according to GTEx for MYO1H Gene

This gene is overexpressed in Testis (x10.0).

Protein differential expression in normal tissues from HIPED for MYO1H Gene

This gene is overexpressed in Heart (58.5) and Adipocyte (7.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for MYO1H Gene



Protein tissue co-expression partners for MYO1H Gene

NURSA nuclear receptor signaling pathways regulating expression of MYO1H Gene:

MYO1H

SOURCE GeneReport for Unigene cluster for MYO1H Gene:

Hs.512008

Evidence on tissue expression from TISSUES for MYO1H Gene

  • Nervous system(4.2)
genes like me logo Genes that share expression patterns with MYO1H: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for MYO1H Gene

Orthologs for MYO1H Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for MYO1H Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MYO1H 34 35
  • 99.45 (n)
dog
(Canis familiaris)
Mammalia MYO1H 34 35
  • 89.56 (n)
cow
(Bos Taurus)
Mammalia MYO1H 35 34
  • 89.09 (n)
OneToOne
mouse
(Mus musculus)
Mammalia Myo1h 16 35 34
  • 82.68 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia MYO1H 35
  • 74 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia MYO1H 35
  • 73 (a)
OneToOne
chicken
(Gallus gallus)
Aves MYO1H 34 35
  • 74.01 (n)
lizard
(Anolis carolinensis)
Reptilia MYO1H 35
  • 72 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia myo1h 34
  • 67.87 (n)
zebrafish
(Danio rerio)
Actinopterygii myo1hb 34 35
  • 65.36 (n)
myo1ha 35
  • 64 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta Myo61F 35
  • 49 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes MYO3 35
  • 26 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.11244 35
  • 52 (a)
OneToMany
Species where no ortholog for MYO1H was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MYO1H Gene

ENSEMBL:
Gene Tree for MYO1H (if available)
TreeFam:
Gene Tree for MYO1H (if available)

Paralogs for MYO1H Gene

Paralogs for MYO1H Gene

genes like me logo Genes that share paralogs with MYO1H: view

Variants for MYO1H Gene

Sequence variations from dbSNP and Humsavar for MYO1H Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000013803 -- 109,439,461(+) AAGGC(C/G)GTGTG intron-variant
rs1000041859 -- 109,418,507(+) ACCAC(A/G)CCCAA intron-variant
rs1000058819 -- 109,407,681(+) CAGCA(A/G)AGCGA intron-variant
rs1000179407 -- 109,442,054(+) AAAAA(A/G)TAAGT intron-variant
rs1000187556 -- 109,410,839(+) TCCCA(A/G)GCTTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MYO1H Gene

Variant ID Type Subtype PubMed ID
nsv1042699 CNV loss 25217958
nsv1160062 CNV duplication 26073780
nsv515873 CNV gain 19592680

Variation tolerance for MYO1H Gene

Residual Variation Intolerance Score: 82.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 9.35; 88.39% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for MYO1H Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MYO1H

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MYO1H Gene

Disorders for MYO1H Gene

MalaCards: The human disease database

(1) MalaCards diseases for MYO1H Gene - From: DISEASES

Disorder Aliases PubMed IDs
spastic paraplegia 36, autosomal dominant
  • hereditary spastic paraplegia 36
- elite association - COSMIC cancer census association via MalaCards
Search MYO1H in MalaCards View complete list of genes associated with diseases

Relevant External Links for MYO1H

Genetic Association Database (GAD)
MYO1H
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MYO1H
genes like me logo Genes that share disorders with MYO1H: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MYO1H Gene

Publications for MYO1H Gene

  1. Genetic variants influencing circulating lipid levels and risk of coronary artery disease. (PMID: 20864672) Waterworth D.M. … Sandhu M.S. (Arterioscler. Thromb. Vasc. Biol. 2010) 3 46 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  3. Role of myosin 1H gene polymorphisms in mandibular retrognathism. (PMID: 27131252) Arun R.M. … Chitharanjan A.B. (Am J Orthod Dentofacial Orthop 2016) 3 64
  4. Toward a comprehensive characterization of a human cancer cell phosphoproteome. (PMID: 23186163) Zhou H. … Mohammed S. (J. Proteome Res. 2013) 4 64
  5. Genetic variation in myosin 1H contributes to mandibular prognathism. (PMID: 22196185) Tassopoulou-Fishell M. … Vieira A.R. (Am J Orthod Dentofacial Orthop 2012) 3 64

Products for MYO1H Gene

Sources for MYO1H Gene

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